BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55190.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324045 jgi|Araly1|324045|fgenesh1_pm.C_scaffold_5001589 1591 0.0
> Ahg324045 jgi|Araly1|324045|fgenesh1_pm.C_scaffold_5001589
Length=939
Score = 1591 bits (861), Expect = 0.0
Identities = 916/942 (97%), Gaps = 5/942 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCATGTGGATGGGCAAGTTGGATATAGCGAGGAATTCATCGAGAATTCGCGGGGA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTCATGTGGATGGGCAAGTTGGATATAGCGAGGAATTCATCGACAATTCGCGGGGA 60
Query 61 ATGCAACTCTTAACATGCAAATGGTTTCCAGTCAATCAAGAACCAAGAGCTCTCATCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGCAACTCTTAACATGCAAATGGTTTCCAGTCAATCAAGAACCAAGAGCTCTCATCTTC 120
Query 121 TTTTGCCATGGCTATGCAATTGATTGCAGCACCACCTTTAAAGATATAGCACCTAAGTTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTGCCATGGCTATGCAATTGATTGCAGCACCACCTTTAAAGATATAGCACCTAAGTTT 180
Query 181 GCAAAAGAAGGTTTTGCTGTGCATGGAATTGAATATGAAGGGCATGGGAGATCAAGCGGT 240
||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct 181 GCAAAAGAAGGTTTTGCTGTGTATGGAATTGAATATGAAGGACATGGGAGATCAGGCGGT 240
Query 241 CTCTCTGTCTACATTGATAACTTCGATCTTCTCATCGATGATGTCTCTTCACATTTCTCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTCTCTGTCTACATTGATAACTTCGATCTTCTCATCGATGATGTCTCTTCACATTTCACC 300
Query 301 AAAATATCTGAGATGGGAGATAACACAAAGAAGAAGAGGTTTTTGATGGGAGAGTCGATG 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 AAAATATCTGAGATGGGAGATAACACAAAGAAGAAGAAGTTTTTGATGGGAGAGTCGATG 360
Query 361 GGAGGAGCAGTAGTCCTTCTCTTGCACCGCAAGAAACCCGAGTTCTGGGATGGAGGAATC 420
|||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 361 GGAGGAGCCGTAGTTCTTCTCTTGCACCGCAAGAAACCAGAGTTTTGGGATGGAGGAATC 420
Query 421 CTTATTGCACCCATGTGTAAGATTGCTGAGGAGATGAAACCATCACGAATGGTTATATCT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTATTGCTCCCATGTGTAAGATTGCTGAGGAGATGAAACCATCACGAATGGTTATATCT 480
Query 481 ATGATAAATATGGTTACAAATCTGATCCCATCATGGAAATCGATAATTCATGGACCCGAT 540
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 481 ATGATAAATATGGTTACAAATCTGATTCCATCATGGAAATCGATAGTTCATGGACCCGAT 540
Query 541 ATCCTTAATAGCGCGATTAAACTGCCTGAAAAGAGACATGAGATAAGAACGAATCCAAAT 600
|||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 541 ATCCTTAATAACGCGATTAAACTGCCTGAAAAGAGACAAGAGATAAGAGCGAATCCAAAT 600
Query 601 TGCTACAAT-GGATGGCCTCGTATGAAGACAATGAGCGAGCTTT-TCAGAATCAGCCTCG 658
||||||||| ||| |||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 601 TGCTACAATGGGA-GGCCTCGTATGAAGACAATGAGCGAGCTTTAT-AGAACCAGCCTCG 658
Query 659 ATCTAGAGAACCGTTTGAACGAGGTGACAATGCCATTCATAGTCTTGCATGGAGAAGATG 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATCTAGAGAACCGGTTGAACGAGGTGACAATGCCATTCATAGTCTTGCATGGAGAAGATG 718
Query 719 ATAAAGTGACAGATAAAGGAGGGAGCAAACTGCTTTATGAGGTGGCTTTGTCTAATGACA 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATAAAGTGACTGATAAAGGAGGGAGCAAACTGCTTTATGAGGTGGCTTTGTCTAATGACA 778
Query 779 AGACTTTGAAGTTGTATCCAGAAATGTGGCATAGCCTTCTTTTTGGAGAGCCTCCGGAGA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGACTTTGAAGTTGTATCCAGAAATGTGGCATAGCCTTCTTTTTGGAGAGCCTCCGGAGA 838
Query 839 ATTCAGAGATTGTGTTCAATGACATTGTCCAATGGATGCAGACAAGAATCACTACTCTTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTCAGAGATTGTGTTCAATGACATTGTCCAATGGATGCAGACAAGAATCACTACTCTTC 898
Query 899 AAGTAAAGGCTAATAATCATGAAGCAAAAACCTCAAATCTGA 940
|||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 899 AAGTGAAGGCTAAAAATCATGAAGCAAAA-CCTCAAATCTGA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5