BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55210.1 Length=843 Score E Sequences producing significant alignments: (Bits) Value Ahg897584 jgi|Araly1|897584|Al_scaffold_0005_1550 832 0.0 Ahg347836 jgi|Araly1|347836|fgenesh1_pg.C_scaffold_5001228 706 0.0 Ahg355644 jgi|Araly1|355644|fgenesh1_pg.C_scaffold_7002817 440 7e-123 > Ahg897584 jgi|Araly1|897584|Al_scaffold_0005_1550 Length=1131 Score = 832 bits (450), Expect = 0.0 Identities = 684/792 (86%), Gaps = 36/792 (5%) Strand=Plus/Plus Query 2 TGTCTCCTCCGTCGACGATAG-CTTACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC 60 ||||||||||||||||||| | | ||| ||||||||||||||||||||||| |||| | | Sbjct 107 TGTCTCCTCCGTCGACGAT-GACGTACCTATTACCGCCAGGTTTTAAGTTTATGCC-ATC 164 Query 61 -GATGAAGAAGTCATCCATTGTTACTTGAAACCTTACTCGGACGGCAACACGAACGTATT 119 |||||| |||| ||| ||||||||||||||| |||| ||||||||||| ||||||||| Sbjct 165 TGATGAACAAGTTATCTTTTGTTACTTGAAACCCTACTTGGACGGCAACAAGAACGTATT 224 Query 120 GCTCCATGTTCCTATTCATCTCGTCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAG 178 |||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| Sbjct 225 GCTCGATGTTCCTATTCATCTCGTCAATATTTACGAGTCGAATCCAC-AACAACTTTCAG 283 Query 179 AGGAATTCCAG-AAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTT 237 |||||| | | ||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 284 TGGAATT-CTGTAAGGGTAACGACAAAGAATGGTTCATTATAACGGAGAGGAACAAAGTT 342 Query 238 GATCAAGGTTTAAGCCAAACAAAGAGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGT 294 ||||||||||||||| ||||||||||||||||| |||||| | || ||||||||||||| Sbjct 343 GATCAAGGTTTAAGCAAAACAAAGAGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGT 402 Query 295 GTCGACACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGA 354 | ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 403 GGCGACACTAAAGGAGGATATTGGCACGCAACAGTGGGAGCCCAGGAGATCAACGCTGGA 462 Query 355 GATGGTGTCGTTCGCAACAAAA-GGCCACTGGCATACTACGTTGGGAAACCA-TCAGAAG 412 | ||||||||| || |||||| || || | |||||||||||| ||||| || |||| | Sbjct 463 CAAGGTGTCGTTGGCTACAAAACGG-CATTTGCATACTACGTTAGGAAA-CAGTCAGCCG 520 Query 413 GCGTCAAAACTGATTGGTTAATGCAAGAATACTCTCTTG-ATCACTCTTCTCACAACAAC 471 | ||||||||||||||||||||| |||||||| ||| ||||| ||| |||||||||| Sbjct 521 ACTTCAAAACTGATTGGTTAATGCTTGAATACTC-GTTGCATCACACTTGTCACAACAAC 579 Query 472 GACAAGGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAaagatgaataaa 531 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| Sbjct 580 GACAAGGATTACACTTTGTGCAAGATCTATCTGACTCCACAAGCAACAAAGAAGAAGAAA 639 Query 532 gaagtgggagaag-agaagaagaagcagaagaaaggagaagCCGTTGTTTCAGTTGCACC 590 ||||||| || | | || |||||||||||||||||| ||| |||| ||||||||||||| Sbjct 640 GAAGTGG-AGGCGCAAAATAAGAAGCAGAAGAAAGGACAAGGCGTTATTTCAGTTGCACC 698 Query 591 TGTGGAAGCATTGGAAGAGCAGCTGCCT-TGTAATGTCGAGTATC-ATCAACCGC-T-A- 645 ||||||||||||||||||||||| |||| | |||||||||||||| | ||||||| | | Sbjct 699 TGTGGAAGCATTGGAAGAGCAGCAGCCTCT-TAATGTCGAGTATCCA-CAACCGCATCAA 756 Query 646 --GCA--CC--GCTAGATTCTTGCCAACCGCAGCCTCATGAT-TTGGCGTATCAACAGCA 698 ||| || ||| ||||||| |||||||||||||||||| ||| | | || || | Sbjct 757 TCGCAAGCCCTGCTGGATTCTTATCAACCGCAGCCTCATGATATTGCCTT-TCCGCAACC 815 Query 699 GCAGTTTT-GTCCAGGCCCACTGGATTCTTATCAACCGCAGCCTCATGATATGGAGAATC 757 |||||||| | | | |||| || |||||| | |||||||||||||||||| ||| | || Sbjct 816 GCAGTTTTCG-CAATGCCCGCTAGATTCTCAGCAACCGCAGCCTCATGATTTGGCGTATA 874 Query 758 AGCAACCGCATA 769 |||||||||||| Sbjct 875 AGCAACCGCATA 886 Score = 60.2 bits (32), Expect = 2e-08 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 718 CTGGATTCTTATCAACCGCAGCCTCATGATAT 749 |||||||||||||||||||||||||||||||| Sbjct 769 CTGGATTCTTATCAACCGCAGCCTCATGATAT 800 > Ahg347836 jgi|Araly1|347836|fgenesh1_pg.C_scaffold_5001228 Length=1608 Score = 706 bits (382), Expect = 0.0 Identities = 644/765 (84%), Gaps = 39/765 (5%) Strand=Plus/Plus Query 2 TGTCTCCTCCGTCGACGATAGCTTACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC- 60 |||||||||||||||||||| | ||| ||||||||||| ||| |||||||||||| | | Sbjct 638 TGTCTCCTCCGTCGACGATACCGTACATATTACCGCCAAGTTATAAGTTTGTGCC-AGCT 696 Query 61 GATGAAGAAGTCATCCATTGTTACTTGAAACCTTACTCGGACGGCAACACGAACGTATTG 120 ||||||||||||||| ||||||||||||||| |||| ||||| ||||| |||||||||| Sbjct 697 GATGAAGAAGTCATCTTTTGTTACTTGAAACCCTACTTGGACGACAACAAGAACGTATTG 756 Query 121 CTCCATGTTCCTATTCATCTCGTCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAGA 179 ||| |||||||||||||||| ||||| || |||||||||||||||| ||| |||||||| Sbjct 757 CTCAATGTTCCTATTCATCTTGTCAACATTTACGAGTCGAATCCAC-AACTACTTTCAGT 815 Query 180 GGAATTCCAGAAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGA 239 |||||| | |||||||| || ||||||||||| ||||||||||||||||| |||||||| Sbjct 816 GGAATTTGATAAGGGTAATGACAAAGAATGGTTCATTATAACGGAGAGGAAAAAAGTTGA 875 Query 240 TCAAGGTTTAAGCCAAACAAAGAGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGTGT 296 ||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||| Sbjct 876 TCAAGGTTTAAGCAAAACAAAGAGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGTGG 935 Query 297 CGACACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTG--GA 354 ||||||||| ||||||||||||||||||||||||| |||||| |||||| || || | Sbjct 936 CGACACTAAAGGAGGATATTGGCACGCAACAGTGGGTGCCCAGGAGATCATCGATGCTG- 994 Query 355 GATGGTGTCGTTCGCAACAAAA-GGCCACTGGCATACTACGTT-GGGAAACCA-TCAGAA 411 || ||| ||||| || |||||| | || | |||||||||||| ||| || || |||| Sbjct 995 GA-GGTATCGTTGGCTACAAAACTG-CATTTGCATACTACGTTAGGG-AA-CAGTCAGCC 1050 Query 412 GGCGTCAAAACTGATTGGTTAATGCAAGAATACTCTCTTG-ATCACTCTTCTCACAACAA 470 | | ||||||||||||||||||||| |||||||| ||| ||||| ||| ||||||||| Sbjct 1051 GACTTCAAAACTGATTGGTTAATGCTTGAATACTC-GTTGCATCACACTTGTCACAACAA 1109 Query 471 CGACAAGGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAaagatgaataa 530 |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| | Sbjct 1110 CGACAAGGATTACACTTTGTGCAAGATCTATCCGACTCCACAAGCAACGAAGAAGAA-AG 1168 Query 531 agaagtgggagaag-agaagaagaagcagaagaaaggagaagCCGTTGTTTCAGTTGCAC 589 | || ||| || | |||| |||||||||||||||||||||| || | |||||||||||| Sbjct 1169 A-AA-TGGAAGC-GCAGAATAAGAAGCAGAAGAAAGGAGAAGTCGCTATTTCAGTTGCAC 1225 Query 590 CTGTGGAAGCATTGGAAGAGCAGCTGCCTTGTAATGTCGAGTATC-ATCAACCGC-T-A- 645 ||||||||||||||||||||| | |||| |||||||||||| || | ||||||| | | Sbjct 1226 ATGTGGAAGCATTGGAAGAGCATCAGCCTCGTAATGTCGAGTTTCCA-CAACCGCATCAA 1284 Query 646 --GCA--CC--GCTAGATTCTTGCCAACCGCAGCCTCATGATTTGGCGTATCAACAGCAG 699 ||| || ||| ||||||| |||| |||||||||||||| || | ||| || | | Sbjct 1285 TCGCAAGCCCTGCTGGATTCTTATCAACATCAGCCTCATGATTTTGCCTTTCAGCAACCG 1344 Query 700 CAGTTTT-GTCCAGGCCC-ACTGGATTCTTATCAACCGCAGCCTC 742 || |||| | | |||||| | | |||||| | ||||||| ||||| Sbjct 1345 CAATTTTCG-CAAGGCCCGA-TAGATTCTCAGCAACCGCTGCCTC 1387 Score = 569 bits (308), Expect = 9e-162 Identities = 465/538 (86%), Gaps = 22/538 (4%) Strand=Plus/Plus Query 25 TACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC-GATGAAGAAGTCATCCATTGTTA 83 ||| ||||||||| ||||||||||||| |||| | | |||||| |||| ||| |||||| Sbjct 7 TACATATTACCGCAAGGTTTTAAGTTTATGCC-ATCTGATGAACAAGTTATCTTTTGTTA 65 Query 84 CTTGAAA-CCTTACTCGGACGGCAACACGAACGTATTGCTCCATGTTCCTATTCATCTCG 142 ||||||| || |||| ||||||| ||| |||||||||||| |||||||||||||||||| Sbjct 66 CTTGAAATCC-TACTTGGACGGCTACAAGAACGTATTGCTTGATGTTCCTATTCATCTCG 124 Query 143 TCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAGAGGAATTCCAGAAGGGTAACGAT 201 ||||||| || ||||||||||||| || |||||||| ||| ||| | ||||||||||| Sbjct 125 TCAATATTTATGAGTCGAATCCAC-GACTACTTTCAGTGGATTTCGATAAGGGTAACGAC 183 Query 202 AAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGATCAAGGTTTAAGCCAAACAAAG 261 |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| Sbjct 184 AAAGAATGGTTTATTATAACGGAGAGAAAAAAAGTTGATCAAGGTTTAAGCAAAACAAAG 243 Query 262 AGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGTGTCGACACTAACGGAGGATATTGG 318 ||||||||| |||||| | || |||||||||||||| ||||||||| |||||||||||| Sbjct 244 AGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGTGGCGACACTAAAGGAGGATATTGG 303 Query 319 CACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGAGATGGTGTCGTTCGCAACAAAA-G 377 ||||||||||||| ||| || ||||||| |||||||| | ||||| || |||||| | Sbjct 304 CACGCAACAGTGGGTGCACATGAGATCAATGCTGGAGA---TATCGTTGGCTACAAAACG 360 Query 378 GCCACTGGCATACTACGTT-GGGAAACCA-TCAGAAGGCGTCAAAACTGATTGGTTAATG 435 | || | |||||||||||| ||| || || |||| | |||||||||||||||||||||| Sbjct 361 G-CATTTGCATACTACGTTAGGG-AA-CAGTCAGCCGACGTCAAAACTGATTGGTTAATG 417 Query 436 CAAGAATACTCTCTTG-ATCACTCTTCTCACAACAACGACAAGGATTACACTTTGTGCAA 494 | |||||||| ||| || || ||| ||||||||||||||||||||||||||||||||| Sbjct 418 CTTGAATACTC-GTTGTATAACACTTTTCACAACAACGACAAGGATTACACTTTGTGCAA 476 Query 495 GATCTATCTTACTCCACAAGCAACAaagatgaataaagaagtgggagaag-agaagaa 551 ||||||||| ||||||||||||||||||| ||| |||||||||| ||| | ||||||| Sbjct 477 GATCTATCTGACTCCACAAGCAACAAAGAAGAAGAAAGAAGTGGAAGA-GCAGAAGAA 533 > Ahg355644 jgi|Araly1|355644|fgenesh1_pg.C_scaffold_7002817 Length=987 Score = 440 bits (238), Expect = 7e-123 Identities = 349/401 (87%), Gaps = 14/401 (3%) Strand=Plus/Plus Query 183 ATTCCAGAAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGATCA 242 |||| | |||||||| || ||||||||||| |||||| |||||||||||||||||||||| Sbjct 21 ATTCGAAAAGGGTAATGAGAAAGAATGGTTCATTATATCGGAGAGGAACAAAGTTGATCA 80 Query 243 AGGTTTAAGCCA-AACAAAGAGAGTTGGTTATGGTGCGA-AAAGGCAGAAACGTGTCGAC 300 |||||||||| | || ||||||||||||| ||||||||| |||| |||||||||| |||| Sbjct 81 AGGTTTAAGCAAGAA-AAAGAGAGTTGGTAATGGTGCGACAAAG-CAGAAACGTGGCGAC 138 Query 301 ACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGAGATGGT 360 ||||| ||||||||||||||||| |||| |||||||||| |||||||| ||||||| ||| Sbjct 139 ACTAAAGGAGGATATTGGCACGCGACAGGGGCTGCCCAAGAGATCAACACTGGAGAAGGT 198 Query 361 GTCGTTCGCAACAAAA-GGCCACTGGCATACTACGTTGGGAAACCATCAGA-AGGCGTCA 418 |||||| || |||||| ||| ||| ||||||| |||| ||| || |||| || ||||| Sbjct 199 GTCGTTGGCTACAAAACGGC-ACTTGCATACTTCGTTAGGACACGGTCAGGCAG-CGTCA 256 Query 419 AAACTGATTGGTTAATGCAA-GAATACTCTCTTG-ATCACTCTTCTCACAACAACGACAA 476 |||| |||||||||||| | |||||||| ||| ||||| ||| ||||||||||||||| Sbjct 257 AAACGGATTGGTTAATG-ATTGAATACTCG-TTGCATCACACTTGTCACAACAACGACAA 314 Query 477 GGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAaagatga-ataaagaag 535 |||||| |||||||||||||||||| | ||||||||||| | ||||| || | ||||||| Sbjct 315 GGATTATACTTTGTGCAAGATCTATATGACTCCACAAGCTATAAAGAAGACA-AAAGAAG 373 Query 536 tgggagaagagaagaagaagcagaagaaaggagaagCCGTT 576 ||| ||||||||| |||||||||||||||||||||| |||| Sbjct 374 TGGAAGAAGAGAATAAGAAGCAGAAGAAAGGAGAAGGCGTT 414 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31184546106 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5