BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55210.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897584 jgi|Araly1|897584|Al_scaffold_0005_1550 832 0.0
Ahg347836 jgi|Araly1|347836|fgenesh1_pg.C_scaffold_5001228 706 0.0
Ahg355644 jgi|Araly1|355644|fgenesh1_pg.C_scaffold_7002817 440 7e-123
> Ahg897584 jgi|Araly1|897584|Al_scaffold_0005_1550
Length=1131
Score = 832 bits (450), Expect = 0.0
Identities = 684/792 (86%), Gaps = 36/792 (5%)
Strand=Plus/Plus
Query 2 TGTCTCCTCCGTCGACGATAG-CTTACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC 60
||||||||||||||||||| | | ||| ||||||||||||||||||||||| |||| | |
Sbjct 107 TGTCTCCTCCGTCGACGAT-GACGTACCTATTACCGCCAGGTTTTAAGTTTATGCC-ATC 164
Query 61 -GATGAAGAAGTCATCCATTGTTACTTGAAACCTTACTCGGACGGCAACACGAACGTATT 119
|||||| |||| ||| ||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 165 TGATGAACAAGTTATCTTTTGTTACTTGAAACCCTACTTGGACGGCAACAAGAACGTATT 224
Query 120 GCTCCATGTTCCTATTCATCTCGTCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAG 178
|||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 225 GCTCGATGTTCCTATTCATCTCGTCAATATTTACGAGTCGAATCCAC-AACAACTTTCAG 283
Query 179 AGGAATTCCAG-AAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTT 237
|||||| | | ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 284 TGGAATT-CTGTAAGGGTAACGACAAAGAATGGTTCATTATAACGGAGAGGAACAAAGTT 342
Query 238 GATCAAGGTTTAAGCCAAACAAAGAGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGT 294
||||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||
Sbjct 343 GATCAAGGTTTAAGCAAAACAAAGAGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGT 402
Query 295 GTCGACACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGA 354
| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 403 GGCGACACTAAAGGAGGATATTGGCACGCAACAGTGGGAGCCCAGGAGATCAACGCTGGA 462
Query 355 GATGGTGTCGTTCGCAACAAAA-GGCCACTGGCATACTACGTTGGGAAACCA-TCAGAAG 412
| ||||||||| || |||||| || || | |||||||||||| ||||| || |||| |
Sbjct 463 CAAGGTGTCGTTGGCTACAAAACGG-CATTTGCATACTACGTTAGGAAA-CAGTCAGCCG 520
Query 413 GCGTCAAAACTGATTGGTTAATGCAAGAATACTCTCTTG-ATCACTCTTCTCACAACAAC 471
| ||||||||||||||||||||| |||||||| ||| ||||| ||| ||||||||||
Sbjct 521 ACTTCAAAACTGATTGGTTAATGCTTGAATACTC-GTTGCATCACACTTGTCACAACAAC 579
Query 472 GACAAGGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAaagatgaataaa 531
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 580 GACAAGGATTACACTTTGTGCAAGATCTATCTGACTCCACAAGCAACAAAGAAGAAGAAA 639
Query 532 gaagtgggagaag-agaagaagaagcagaagaaaggagaagCCGTTGTTTCAGTTGCACC 590
||||||| || | | || |||||||||||||||||| ||| |||| |||||||||||||
Sbjct 640 GAAGTGG-AGGCGCAAAATAAGAAGCAGAAGAAAGGACAAGGCGTTATTTCAGTTGCACC 698
Query 591 TGTGGAAGCATTGGAAGAGCAGCTGCCT-TGTAATGTCGAGTATC-ATCAACCGC-T-A- 645
||||||||||||||||||||||| |||| | |||||||||||||| | ||||||| | |
Sbjct 699 TGTGGAAGCATTGGAAGAGCAGCAGCCTCT-TAATGTCGAGTATCCA-CAACCGCATCAA 756
Query 646 --GCA--CC--GCTAGATTCTTGCCAACCGCAGCCTCATGAT-TTGGCGTATCAACAGCA 698
||| || ||| ||||||| |||||||||||||||||| ||| | | || || |
Sbjct 757 TCGCAAGCCCTGCTGGATTCTTATCAACCGCAGCCTCATGATATTGCCTT-TCCGCAACC 815
Query 699 GCAGTTTT-GTCCAGGCCCACTGGATTCTTATCAACCGCAGCCTCATGATATGGAGAATC 757
|||||||| | | | |||| || |||||| | |||||||||||||||||| ||| | ||
Sbjct 816 GCAGTTTTCG-CAATGCCCGCTAGATTCTCAGCAACCGCAGCCTCATGATTTGGCGTATA 874
Query 758 AGCAACCGCATA 769
||||||||||||
Sbjct 875 AGCAACCGCATA 886
Score = 60.2 bits (32), Expect = 2e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 718 CTGGATTCTTATCAACCGCAGCCTCATGATAT 749
||||||||||||||||||||||||||||||||
Sbjct 769 CTGGATTCTTATCAACCGCAGCCTCATGATAT 800
> Ahg347836 jgi|Araly1|347836|fgenesh1_pg.C_scaffold_5001228
Length=1608
Score = 706 bits (382), Expect = 0.0
Identities = 644/765 (84%), Gaps = 39/765 (5%)
Strand=Plus/Plus
Query 2 TGTCTCCTCCGTCGACGATAGCTTACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC- 60
|||||||||||||||||||| | ||| ||||||||||| ||| |||||||||||| | |
Sbjct 638 TGTCTCCTCCGTCGACGATACCGTACATATTACCGCCAAGTTATAAGTTTGTGCC-AGCT 696
Query 61 GATGAAGAAGTCATCCATTGTTACTTGAAACCTTACTCGGACGGCAACACGAACGTATTG 120
||||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||
Sbjct 697 GATGAAGAAGTCATCTTTTGTTACTTGAAACCCTACTTGGACGACAACAAGAACGTATTG 756
Query 121 CTCCATGTTCCTATTCATCTCGTCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAGA 179
||| |||||||||||||||| ||||| || |||||||||||||||| ||| ||||||||
Sbjct 757 CTCAATGTTCCTATTCATCTTGTCAACATTTACGAGTCGAATCCAC-AACTACTTTCAGT 815
Query 180 GGAATTCCAGAAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGA 239
|||||| | |||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 816 GGAATTTGATAAGGGTAATGACAAAGAATGGTTCATTATAACGGAGAGGAAAAAAGTTGA 875
Query 240 TCAAGGTTTAAGCCAAACAAAGAGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGTGT 296
||||||||||||| ||||||||||||||||| |||||| | || ||||||||||||||
Sbjct 876 TCAAGGTTTAAGCAAAACAAAGAGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGTGG 935
Query 297 CGACACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTG--GA 354
||||||||| ||||||||||||||||||||||||| |||||| |||||| || || |
Sbjct 936 CGACACTAAAGGAGGATATTGGCACGCAACAGTGGGTGCCCAGGAGATCATCGATGCTG- 994
Query 355 GATGGTGTCGTTCGCAACAAAA-GGCCACTGGCATACTACGTT-GGGAAACCA-TCAGAA 411
|| ||| ||||| || |||||| | || | |||||||||||| ||| || || ||||
Sbjct 995 GA-GGTATCGTTGGCTACAAAACTG-CATTTGCATACTACGTTAGGG-AA-CAGTCAGCC 1050
Query 412 GGCGTCAAAACTGATTGGTTAATGCAAGAATACTCTCTTG-ATCACTCTTCTCACAACAA 470
| | ||||||||||||||||||||| |||||||| ||| ||||| ||| |||||||||
Sbjct 1051 GACTTCAAAACTGATTGGTTAATGCTTGAATACTC-GTTGCATCACACTTGTCACAACAA 1109
Query 471 CGACAAGGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAaagatgaataa 530
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |
Sbjct 1110 CGACAAGGATTACACTTTGTGCAAGATCTATCCGACTCCACAAGCAACGAAGAAGAA-AG 1168
Query 531 agaagtgggagaag-agaagaagaagcagaagaaaggagaagCCGTTGTTTCAGTTGCAC 589
| || ||| || | |||| |||||||||||||||||||||| || | ||||||||||||
Sbjct 1169 A-AA-TGGAAGC-GCAGAATAAGAAGCAGAAGAAAGGAGAAGTCGCTATTTCAGTTGCAC 1225
Query 590 CTGTGGAAGCATTGGAAGAGCAGCTGCCTTGTAATGTCGAGTATC-ATCAACCGC-T-A- 645
||||||||||||||||||||| | |||| |||||||||||| || | ||||||| | |
Sbjct 1226 ATGTGGAAGCATTGGAAGAGCATCAGCCTCGTAATGTCGAGTTTCCA-CAACCGCATCAA 1284
Query 646 --GCA--CC--GCTAGATTCTTGCCAACCGCAGCCTCATGATTTGGCGTATCAACAGCAG 699
||| || ||| ||||||| |||| |||||||||||||| || | ||| || | |
Sbjct 1285 TCGCAAGCCCTGCTGGATTCTTATCAACATCAGCCTCATGATTTTGCCTTTCAGCAACCG 1344
Query 700 CAGTTTT-GTCCAGGCCC-ACTGGATTCTTATCAACCGCAGCCTC 742
|| |||| | | |||||| | | |||||| | ||||||| |||||
Sbjct 1345 CAATTTTCG-CAAGGCCCGA-TAGATTCTCAGCAACCGCTGCCTC 1387
Score = 569 bits (308), Expect = 9e-162
Identities = 465/538 (86%), Gaps = 22/538 (4%)
Strand=Plus/Plus
Query 25 TACGTATTACCGCCAGGTTTTAAGTTTGTGCCAAAC-GATGAAGAAGTCATCCATTGTTA 83
||| ||||||||| ||||||||||||| |||| | | |||||| |||| ||| ||||||
Sbjct 7 TACATATTACCGCAAGGTTTTAAGTTTATGCC-ATCTGATGAACAAGTTATCTTTTGTTA 65
Query 84 CTTGAAA-CCTTACTCGGACGGCAACACGAACGTATTGCTCCATGTTCCTATTCATCTCG 142
||||||| || |||| ||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 66 CTTGAAATCC-TACTTGGACGGCTACAAGAACGTATTGCTTGATGTTCCTATTCATCTCG 124
Query 143 TCAATATCTACGAGTCGAATCCACAAAC-ACTTTCAGAGGAATTCCAGAAGGGTAACGAT 201
||||||| || ||||||||||||| || |||||||| ||| ||| | |||||||||||
Sbjct 125 TCAATATTTATGAGTCGAATCCAC-GACTACTTTCAGTGGATTTCGATAAGGGTAACGAC 183
Query 202 AAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGATCAAGGTTTAAGCCAAACAAAG 261
|||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||
Sbjct 184 AAAGAATGGTTTATTATAACGGAGAGAAAAAAAGTTGATCAAGGTTTAAGCAAAACAAAG 243
Query 262 AGAGTTGGTTATGGTGCG--AA-AAGGCAGAAACGTGTCGACACTAACGGAGGATATTGG 318
||||||||| |||||| | || |||||||||||||| ||||||||| ||||||||||||
Sbjct 244 AGAGTTGGTAATGGTGGGACAACAAGGCAGAAACGTGGCGACACTAAAGGAGGATATTGG 303
Query 319 CACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGAGATGGTGTCGTTCGCAACAAAA-G 377
||||||||||||| ||| || ||||||| |||||||| | ||||| || |||||| |
Sbjct 304 CACGCAACAGTGGGTGCACATGAGATCAATGCTGGAGA---TATCGTTGGCTACAAAACG 360
Query 378 GCCACTGGCATACTACGTT-GGGAAACCA-TCAGAAGGCGTCAAAACTGATTGGTTAATG 435
| || | |||||||||||| ||| || || |||| | ||||||||||||||||||||||
Sbjct 361 G-CATTTGCATACTACGTTAGGG-AA-CAGTCAGCCGACGTCAAAACTGATTGGTTAATG 417
Query 436 CAAGAATACTCTCTTG-ATCACTCTTCTCACAACAACGACAAGGATTACACTTTGTGCAA 494
| |||||||| ||| || || ||| |||||||||||||||||||||||||||||||||
Sbjct 418 CTTGAATACTC-GTTGTATAACACTTTTCACAACAACGACAAGGATTACACTTTGTGCAA 476
Query 495 GATCTATCTTACTCCACAAGCAACAaagatgaataaagaagtgggagaag-agaagaa 551
||||||||| ||||||||||||||||||| ||| |||||||||| ||| | |||||||
Sbjct 477 GATCTATCTGACTCCACAAGCAACAAAGAAGAAGAAAGAAGTGGAAGA-GCAGAAGAA 533
> Ahg355644 jgi|Araly1|355644|fgenesh1_pg.C_scaffold_7002817
Length=987
Score = 440 bits (238), Expect = 7e-123
Identities = 349/401 (87%), Gaps = 14/401 (3%)
Strand=Plus/Plus
Query 183 ATTCCAGAAGGGTAACGATAAAGAATGGTTTATTATAACGGAGAGGAACAAAGTTGATCA 242
|||| | |||||||| || ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 21 ATTCGAAAAGGGTAATGAGAAAGAATGGTTCATTATATCGGAGAGGAACAAAGTTGATCA 80
Query 243 AGGTTTAAGCCA-AACAAAGAGAGTTGGTTATGGTGCGA-AAAGGCAGAAACGTGTCGAC 300
|||||||||| | || ||||||||||||| ||||||||| |||| |||||||||| ||||
Sbjct 81 AGGTTTAAGCAAGAA-AAAGAGAGTTGGTAATGGTGCGACAAAG-CAGAAACGTGGCGAC 138
Query 301 ACTAACGGAGGATATTGGCACGCAACAGTGGCTGCCCAAAAGATCAACGCTGGAGATGGT 360
||||| ||||||||||||||||| |||| |||||||||| |||||||| ||||||| |||
Sbjct 139 ACTAAAGGAGGATATTGGCACGCGACAGGGGCTGCCCAAGAGATCAACACTGGAGAAGGT 198
Query 361 GTCGTTCGCAACAAAA-GGCCACTGGCATACTACGTTGGGAAACCATCAGA-AGGCGTCA 418
|||||| || |||||| ||| ||| ||||||| |||| ||| || |||| || |||||
Sbjct 199 GTCGTTGGCTACAAAACGGC-ACTTGCATACTTCGTTAGGACACGGTCAGGCAG-CGTCA 256
Query 419 AAACTGATTGGTTAATGCAA-GAATACTCTCTTG-ATCACTCTTCTCACAACAACGACAA 476
|||| |||||||||||| | |||||||| ||| ||||| ||| |||||||||||||||
Sbjct 257 AAACGGATTGGTTAATG-ATTGAATACTCG-TTGCATCACACTTGTCACAACAACGACAA 314
Query 477 GGATTACACTTTGTGCAAGATCTATCTTACTCCACAAGCAACAaagatga-ataaagaag 535
|||||| |||||||||||||||||| | ||||||||||| | ||||| || | |||||||
Sbjct 315 GGATTATACTTTGTGCAAGATCTATATGACTCCACAAGCTATAAAGAAGACA-AAAGAAG 373
Query 536 tgggagaagagaagaagaagcagaagaaaggagaagCCGTT 576
||| ||||||||| |||||||||||||||||||||| ||||
Sbjct 374 TGGAAGAAGAGAATAAGAAGCAGAAGAAAGGAGAAGGCGTT 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5