BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55230.1 Length=1099 Score E Sequences producing significant alignments: (Bits) Value Ahg485944 jgi|Araly1|485944|fgenesh2_kg.5__1936__AT3G55230.1 1526 0.0 > Ahg485944 jgi|Araly1|485944|fgenesh2_kg.5__1936__AT3G55230.1 Length=1088 Score = 1526 bits (826), Expect = 0.0 Identities = 1011/1096 (92%), Gaps = 29/1096 (3%) Strand=Plus/Plus Query 21 AAAAGAAAGAACAATGGCCAAAGCTCTTAGCCTTACAATCTTTCTCTTTCTCTTGATAGC 80 ||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct 1 AAAAGAACGAACAATGGCTAAAGCTCTTAGCCTAACAATCTTTCTCTTCCTCTTGATAGC 60 Query 81 TTCCAATGTCCAATCCGCTCGACTTCTCGATGAGGTTCAAACTCAGCCACAATTAGT-CC 139 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TTCCAGTGTCCAATCCGCTCGACTTCTCGATGAGGTTCAAACTCAGCCACAATTAGTCCC 120 Query 140 ---C--CC--A-------GGTACCGGAAGAGGAAGATGATAGTCCACAAGCCGTAAC-A- 183 | || | ||||||| |||||||||||| |||||||||||||||||| | Sbjct 121 AGGCGGCCAAATCCCCGCGGTACCGAAAGAGGAAGATGGTAGTCCACAAGCCGTAACAAC 180 Query 184 ACAA-CTCCAACACCAATTCCTCTCCCAGGACCCGCCACGGGAGGACCCGAGCCAATCCT 242 |||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 181 ACAAGCTCCAATACCAATTCCTCTCCCAGGACCCGCGGCGGGAGGACAAGAGCCAATCCT 240 Query 243 AGAGTTCTTTATGCATGACGTGCTAGGCGGGTCACACCCATCAGCACGTGTGGTTACAGG 302 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 241 AGAGTTCTTTATGCATGACGTGCTAGGCGGGTCACACCCGTCAGCACGTGTGGTTACAGG 300 Query 303 GATAGTAGCACAAACAGAGGTGAATGGAATACCGTTTTCTAAATCCAGCAACAACATTTT 362 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 301 GATAGTAGCACAAACAGAGGTGAACGGGATACCGTTTTCTAAATCCAGCAACAACATTTT 360 Query 363 CCCAGTAGATAACGCAGTGCCGCTTGTGAACGCAAACAGCATCAACAACTTAATCAATCC 422 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 361 CCCCGTAGATAACGCAGTGCCGCTTGTGAACGCAAACAGCATCAACAATTTAATCAACCC 420 Query 423 AAACACAGCTCCACTCCTAACAGGACTTAGTGGCTCTCAAGCCAACACCGTAATCCAAAA 482 |||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct 421 AAACACAGCTCCACTCCTCACTGGACTTAGTGGCTCTCAAGCCAACACCGTCATTCAAAA 480 Query 483 CAGTAACGGTAACTCTCAAGGATCCCTTAGCTCCAACAACCTTCCCTTTGTAACCACGGG 542 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CAGTAACGGTAACTCCCAAGGATCCCTTAGCTCCAACAACCTTCCCTTTGTAACCACGGG 540 Query 543 TCAGCTCCCTCCCATAGCTGCCCTCCAACAGCTTATGTTTGGCTCTATCACCGTGGTTGA 602 |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 541 TCAGCTCCCTCCTATAGCTGCCCTCCAACAGCTCATGTTTGGCTCTATCACAGTGGTTGA 600 Query 603 CGATGAGCTCACCGAGGGCCATGAGTTGGGCTCTGCGATCATTGGGAGAGCCCAAGGGTT 662 |||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||| Sbjct 601 CGATGAGCTCACTGAAGGCCATGAGTTGGGCTCTGCAATCATTGGCAGAGCCCAAGGGTT 660 Query 663 TTATCTCGCTAGCTCTTTGGATGGAACTAGCCAGACCCTTTCGTTGACAGTGTTACTCCA 722 ||| ||||||||||||||||| |||||||||||||||||||| || || ||||| ||||| Sbjct 661 TTACCTCGCTAGCTCTTTGGACGGAACTAGCCAGACCCTTTCCTTAACCGTGTTGCTCCA 720 Query 723 CGAAGATCATGATCATCATGACACCCTTGATGATGCCATCAGCTTCTTTGGGGTTCACCG 782 |||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 721 CGAAGAGCATGATCACCATGACACCCTTGATGATGCGATCAGCTTCTTCGGGGTTCACCG 780 Query 783 AACCGCTTCTCATGCGTCGCATATCGCTGTTGTGGGTGGAACTGGGAGATTCGAGCATGC 842 ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 781 AACCGCTTCTCATGCCTCGCATATCGCTGTTGTGGGTGGGACTGGCAGATTCGAGCATGC 840 Query 843 TAAAGGGTATGCTGTCGTGGAGACTCTACACAACCAGGAAGACCAACATGTTACTGATGG 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TAAAGGGTATGCTGTCGTGGAGACTCTACACAACCAGGAAGACCAACATGTTACTGATGG 900 Query 903 TC-ATGATACCATTCTCCATTTCAGTGTTTATCTTACATACTACAAAGCTTGAAGAGTTA 961 || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 901 TCCATGATACCATTCTCCATTTCAGTGTTTATCTTACCTACTACAAAGCTTGAAGAGTAA 960 Query 962 TGGCATTTGTTGA-AAGAAAATTCCTCTGTTTCGTTTGTATGTTCTTCTTTA-TAAGTTT 1019 |||||||||||| || |||||||||||||||| | ||||||||||| |||| || | || Sbjct 961 TGGCATTTGTTGTTAA-AAAATTCCTCTGTTTCATATGTATGTTCTTGTTTACTA-GCTT 1018 Query 1020 AATGTGTGGTCTATATTGTGTTGTGCACGTTTACTGTACTGaaaaaaaGAAAGTTAAATG 1079 |||||||| || ||||||||||||||||||||||||| | ||||| | ||||||| Sbjct 1019 GATGTGTGGCCTTTATTGTGTTGTGCACGTTTACTGTATTTAAAAA--G----TTAAATG 1072 Query 1080 ACAATCTTTGTCTTTA 1095 | |||||||||||||| Sbjct 1073 AGAATCTTTGTCTTTA 1088 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40944012858 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5