BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55230.1
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485944 jgi|Araly1|485944|fgenesh2_kg.5__1936__AT3G55230.1 1526 0.0
> Ahg485944 jgi|Araly1|485944|fgenesh2_kg.5__1936__AT3G55230.1
Length=1088
Score = 1526 bits (826), Expect = 0.0
Identities = 1011/1096 (92%), Gaps = 29/1096 (3%)
Strand=Plus/Plus
Query 21 AAAAGAAAGAACAATGGCCAAAGCTCTTAGCCTTACAATCTTTCTCTTTCTCTTGATAGC 80
||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1 AAAAGAACGAACAATGGCTAAAGCTCTTAGCCTAACAATCTTTCTCTTCCTCTTGATAGC 60
Query 81 TTCCAATGTCCAATCCGCTCGACTTCTCGATGAGGTTCAAACTCAGCCACAATTAGT-CC 139
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTCCAGTGTCCAATCCGCTCGACTTCTCGATGAGGTTCAAACTCAGCCACAATTAGTCCC 120
Query 140 ---C--CC--A-------GGTACCGGAAGAGGAAGATGATAGTCCACAAGCCGTAAC-A- 183
| || | ||||||| |||||||||||| |||||||||||||||||| |
Sbjct 121 AGGCGGCCAAATCCCCGCGGTACCGAAAGAGGAAGATGGTAGTCCACAAGCCGTAACAAC 180
Query 184 ACAA-CTCCAACACCAATTCCTCTCCCAGGACCCGCCACGGGAGGACCCGAGCCAATCCT 242
|||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 181 ACAAGCTCCAATACCAATTCCTCTCCCAGGACCCGCGGCGGGAGGACAAGAGCCAATCCT 240
Query 243 AGAGTTCTTTATGCATGACGTGCTAGGCGGGTCACACCCATCAGCACGTGTGGTTACAGG 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 AGAGTTCTTTATGCATGACGTGCTAGGCGGGTCACACCCGTCAGCACGTGTGGTTACAGG 300
Query 303 GATAGTAGCACAAACAGAGGTGAATGGAATACCGTTTTCTAAATCCAGCAACAACATTTT 362
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 301 GATAGTAGCACAAACAGAGGTGAACGGGATACCGTTTTCTAAATCCAGCAACAACATTTT 360
Query 363 CCCAGTAGATAACGCAGTGCCGCTTGTGAACGCAAACAGCATCAACAACTTAATCAATCC 422
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 361 CCCCGTAGATAACGCAGTGCCGCTTGTGAACGCAAACAGCATCAACAATTTAATCAACCC 420
Query 423 AAACACAGCTCCACTCCTAACAGGACTTAGTGGCTCTCAAGCCAACACCGTAATCCAAAA 482
|||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 421 AAACACAGCTCCACTCCTCACTGGACTTAGTGGCTCTCAAGCCAACACCGTCATTCAAAA 480
Query 483 CAGTAACGGTAACTCTCAAGGATCCCTTAGCTCCAACAACCTTCCCTTTGTAACCACGGG 542
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAGTAACGGTAACTCCCAAGGATCCCTTAGCTCCAACAACCTTCCCTTTGTAACCACGGG 540
Query 543 TCAGCTCCCTCCCATAGCTGCCCTCCAACAGCTTATGTTTGGCTCTATCACCGTGGTTGA 602
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 541 TCAGCTCCCTCCTATAGCTGCCCTCCAACAGCTCATGTTTGGCTCTATCACAGTGGTTGA 600
Query 603 CGATGAGCTCACCGAGGGCCATGAGTTGGGCTCTGCGATCATTGGGAGAGCCCAAGGGTT 662
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 601 CGATGAGCTCACTGAAGGCCATGAGTTGGGCTCTGCAATCATTGGCAGAGCCCAAGGGTT 660
Query 663 TTATCTCGCTAGCTCTTTGGATGGAACTAGCCAGACCCTTTCGTTGACAGTGTTACTCCA 722
||| ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||
Sbjct 661 TTACCTCGCTAGCTCTTTGGACGGAACTAGCCAGACCCTTTCCTTAACCGTGTTGCTCCA 720
Query 723 CGAAGATCATGATCATCATGACACCCTTGATGATGCCATCAGCTTCTTTGGGGTTCACCG 782
|||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 721 CGAAGAGCATGATCACCATGACACCCTTGATGATGCGATCAGCTTCTTCGGGGTTCACCG 780
Query 783 AACCGCTTCTCATGCGTCGCATATCGCTGTTGTGGGTGGAACTGGGAGATTCGAGCATGC 842
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 781 AACCGCTTCTCATGCCTCGCATATCGCTGTTGTGGGTGGGACTGGCAGATTCGAGCATGC 840
Query 843 TAAAGGGTATGCTGTCGTGGAGACTCTACACAACCAGGAAGACCAACATGTTACTGATGG 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TAAAGGGTATGCTGTCGTGGAGACTCTACACAACCAGGAAGACCAACATGTTACTGATGG 900
Query 903 TC-ATGATACCATTCTCCATTTCAGTGTTTATCTTACATACTACAAAGCTTGAAGAGTTA 961
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 901 TCCATGATACCATTCTCCATTTCAGTGTTTATCTTACCTACTACAAAGCTTGAAGAGTAA 960
Query 962 TGGCATTTGTTGA-AAGAAAATTCCTCTGTTTCGTTTGTATGTTCTTCTTTA-TAAGTTT 1019
|||||||||||| || |||||||||||||||| | ||||||||||| |||| || | ||
Sbjct 961 TGGCATTTGTTGTTAA-AAAATTCCTCTGTTTCATATGTATGTTCTTGTTTACTA-GCTT 1018
Query 1020 AATGTGTGGTCTATATTGTGTTGTGCACGTTTACTGTACTGaaaaaaaGAAAGTTAAATG 1079
|||||||| || ||||||||||||||||||||||||| | ||||| | |||||||
Sbjct 1019 GATGTGTGGCCTTTATTGTGTTGTGCACGTTTACTGTATTTAAAAA--G----TTAAATG 1072
Query 1080 ACAATCTTTGTCTTTA 1095
| ||||||||||||||
Sbjct 1073 AGAATCTTTGTCTTTA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40944012858
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5