BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55240.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485945 jgi|Araly1|485945|fgenesh2_kg.5__1937__AT3G55240.1 959 0.0
> Ahg485945 jgi|Araly1|485945|fgenesh2_kg.5__1937__AT3G55240.1
Length=656
Score = 959 bits (519), Expect = 0.0
Identities = 632/681 (93%), Gaps = 30/681 (4%)
Strand=Plus/Plus
Query 1 TTTTAGAAAGAAGACTCTCTTTTAAGTTTGGGTGTTAATTCTAGGGTTTCCATTAACAAT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTAGAAAGAAGACTCTCTTCTAAGTTTGGGTGTTAATTCTAGGGTTTCCATTAACAAT 60
Query 61 GGCAGATTCTTCTTCTGCTTCTTACATTCACATGGTGCAGCACATGATAGAGAAATGTTT 120
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTGACTCTTCTTCTGCTTCTTACATTCACATGGTGCAGCACATGATAGAGAAATGTTT 120
Query 121 GATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCTTCCATATGAGCAAAGAAGAGTGTGTGGAAGCTCTCTCTAAGCATGCAAACATCAC 180
Query 181 TCCTGTCATCACCTCTACTGTGTGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAA 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCTGTCATCACCTCTACTGTATGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAA 240
Query 241 GGCGTATGAGGAGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGAT 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCATATGAGGAGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGAT 300
Query 301 GATCCAGAAGATTATCTCGGATTCATCTAAAGAATCCGACGACTGATCGCGATGTTCGAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GATCCAGAAGATTATCTCGGATTCATCTAAAGAATCCGACGACTGATCGCGATGTTCG-T 359
Query 361 CGTTAGAT-TTCGAAAACCTTATAGTTTATATATATGAATCTCATGAAAACGATTTATCC 419
| |||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 --T-AGATCTTT-AAAACCTTATAGTTTATATATATAAATCTCATGAAAACGATTTATCC 415
Query 420 CTGACGCATGCATGTTTATAAGTAAATCGTTTTTT--CATCT-TAG-CATCGGTCCAACA 475
|||||||||||||||||||| |||||||||||||| ||||| | | |||||||||||||
Sbjct 416 CTGACGCATGCATGTTTATATGTAAATCGTTTTTTTTCATCTCTTGGCATCGGTCCAACA 475
Query 476 AGCAAGACAGCaaaaaaaGGAGTGATGACACTCTTTTTGGTACGTTATACGTACGTGGTC 535
|| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 476 AGAAAGACAGCAAAAAAAGG-GTGATGACACTCCTTTTGGTACGTTATACGTACGTGGTC 534
Query 536 CACATAATATTGCCTCTGTTTAATTATATATAATGAAACGGACGCTAGCTCATACATGGA 595
||||||||||||||| ||| |||||| ||||| | || | | | | | | |
Sbjct 535 CACATAATATTGCCTTTGTATAATTA-ATATA-T-AA--------T-G---A-A-A-G-A 575
Query 596 TCGATGGTGTGGTGTTTTAATTGAATGTATCGTGTGTATATATTTTCAAATAAACTATTT 655
|||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 576 TCGATGGTGTGGCGTTTTAATTGAATGTATCATGTGTATATATCTTCAAATAAACTATTT 635
Query 656 ATTTCGGGTTTTGGTCACCTT 676
|| || ||| |||||||||||
Sbjct 636 ATCTCTGGTCTTGGTCACCTT 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5