BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55250.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348614 jgi|Araly1|348614|fgenesh1_pg.C_scaffold_5002006 1247 0.0
> Ahg348614 jgi|Araly1|348614|fgenesh1_pg.C_scaffold_5002006
Length=834
Score = 1247 bits (675), Expect = 0.0
Identities = 784/837 (94%), Gaps = 6/837 (1%)
Strand=Plus/Plus
Query 14 ATGGTGGTTGTCACTCACATCTCCACTTCCTTCCACCAAATCTCTCCTTCCTTCTTCCAT 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTTGTCACTCACATCTCCACTTCCTTCCACCAAATCTCTCCTTCCTTCTTCCAT 60
Query 74 CTCCGTCTTCGTAATCCCTCCAC--CACTTCTTCGTCTCGTCCCAAACTCGACGGTGGTT 131
||||||||||| |||||| || | | |||| | ||| | | ||||||||
Sbjct 61 CTCCGTCTTCGCAATCCCGCCTCGTCCCTTC--CCAAACGTGGCGGAGGATACGGTGGTA 118
Query 132 TCGCTTTGTCAATTCGAGCTTACATAGAGAAACCAAACTCTTTCTCCACCTTCGCTAACA 191
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 119 TCGCTTTGTCAATTCGAGCTTACATAGAGAAACCTAACTCCTTCTCCACCTTCGCTAACA 178
Query 192 AAGTCATCGGTTCTCTTCCCGTTATCGGACTCCTCGCTCGAATTATCAGCGATGAAGGCG 251
||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 179 AAGTCATCGGTTCGCTTCCGGTTATCGGACTCCTCGCTCGGATTCTCAGCGATGAAGGCG 238
Query 252 GCGTTGGTAGAGATCTCGTCGATTTCGCTGAGTTTAGGAAACGAGTTGGGAATAAATGTA 311
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 GCGTTGGAAGAGATCTCGTCGATTTCGCTGAGTTTAGGAAACGAGTTGGGAATAAATGCA 298
Query 312 CTCCTGATGATTCTAGGGCTTTCTATGAGTTCCAACAGCGACGAGGCAAGGCAGGTGAGC 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 299 CTCCTGATGATTCTAGGGCTTTCTATGAGTTCCAACAGCGACGAGGCAAGGCAGGAGAAC 358
Query 372 CTTTGTATGTGCTTCTGTGTTGTTGGGTTGCTGCAGTAGGTGCAGGTCTTCTCAAATCTG 431
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 CTTTGTATGTGCTTCTATGTTGTTGGGTTGCTGCAGTAGGTGCAGGGCTTCTCAAATCTG 418
Query 432 AAGAGATTCTTGAAGGTGTTACTAGAGTTAGCATTTCCAATGATCTCGAGTTTGAAGAAC 491
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 419 AAGAGATTCTTGAAGGTGTTACCAGAGTTAGCATTTCGAATGATCTTGAGTTTGAAGAAC 478
Query 492 AGAACTTCATTGCTTTGATGACTGAAGCTAGACAGAGAAGAGCAAAGTTGAACATTGATG 551
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 AGAACTTCATTGCTTTGATGACTGAAGCTAGACAGAGAAGGGCAAAGTTGAACATTGATG 538
Query 552 CGCCAACAATACCGATGGAACTAAGAGTTGAAAAGGCTCTTGAAGGTATTTATGCTTGTT 611
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 CGCCAATAATACCAATGGAACTAAGAGTCGAAAAGGCTCTTGAAGGTATTTATGCTTGTT 598
Query 612 GCTTTCGGAGAGGACTTATTGAAGAGGAGGATGAGAAGCTTCTTAAAGTGATGTTAATAG 671
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |
Sbjct 599 GCTTTCGGAGAGGACTTATCGAAGAGGAGGATGAGAAGCTTCTTCAAGTGATGCTAATCG 658
Query 672 CGGTTTTCCCATCGGTTGAGAAGTCTGAGATAGAGAGAATCATCAAAGAGAAGGCGACAA 731
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 CAGTTTTCCCATCGGTTGAGAAGTCTGAGATAGAGAGAATCATCAAAGAGAAAGCGACAA 718
Query 732 GGGTTG-AGGAAGGAGGAGAGGAAGAGAATGTTATGGCGAAACGGTTGCCTAAAGAAGCT 790
|||||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 719 GGGTTGCAG-AAGGAGGAGAAGAAGAGAATGTCATGGCGAAACGGTTGCCCAAAGAAGCT 777
Query 791 ATTCAAATGCAGATGAAGGATCTTGAATTCCTTCAACAACAAAACATAGAGTCTTAA 847
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 778 ATTCAAATGCAGATGAAGGATCTTGAGTTCCTTCAACAACAAAACATAGAATCTTAA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5