BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55252.1 Length=524 Score E Sequences producing significant alignments: (Bits) Value Ahg938456 jgi|Araly1|938456|scaffold_502647.1 638 0.0 Ahg938457 jgi|Araly1|938457|scaffold_502648.1 538 2e-152 Ahg938512 jgi|Araly1|938512|scaffold_502703.1 392 1e-108 > Ahg938456 jgi|Araly1|938456|scaffold_502647.1 Length=543 Score = 638 bits (345), Expect = 0.0 Identities = 463/520 (89%), Gaps = 8/520 (2%) Strand=Plus/Plus Query 2 CTCCTACATAATTTACTTAACCATGGCTTTCACAAGTAAACCTCATTTTATAATGTTGTG 61 ||| |||||||||||| || | ||||||||||||| |||| |||||||||||||||||| Sbjct 1 CTCTTACATAATTTACCTAGCTATGGCTTTCACAAATAAATCTCATTTTATAATGTTGTT 60 Query 62 TATGATCTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAG 120 ||| |||| || |||||||||||| |||||||||||||||| || ||||| ||||||||| Sbjct 61 TATAATCTCTTCTACTCTTATTCTCTTTGTGTCTGCATTAGATT-TTTCTAATGCTCCAG 119 Query 121 CGGAAGCACCA-ACTTCGGGCGGCGATGGCTTGTTACCTCTAAG-CGAAAAACATGTTGT 178 | ||||||||| | |||| || ||| |||||||||||||| || ||||||||||||||| Sbjct 120 CAGAAGCACCAGGC-TCGGACGACGACGGCTTGTTACCTCT-AGCCGAAAAACATGTTGT 177 Query 179 AATCCGCAACAAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGA 238 ||| ||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||| Sbjct 178 AATTCGCAACAAGGTAAAAAACAGAGAAATATTGAATGTACATTGCAAATCTAGTGAAGA 237 Query 239 TGATTTTGGGCTTAAACATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAA 298 |||||||||| ||| ||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct 238 TGATTTTGGGATTATCCATCTTCCTTGGAATGGTACATGGGGTTTCAGATTTCATGTTAA 297 Query 299 CTTTTTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATAATGGTGGATCTCATTA 358 | ||| |||| |||||||||||||||||||||||| |||||||| || ||||||||||| Sbjct 298 CATTTGGAAAAATACGAAATTTCGTTGTCATTTTACATGGCATAAAGGCGGATCTCATTA 357 Query 359 TTTTTATATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGAACTTCC-GATTTGTA 417 ||||||||||||||||| |||||||||||||||| || ||||| || |||| | |||||| Sbjct 358 TTTTTATATATTTAAAGTATCAAGAGATGATAGTGCATTTGGACAAATTCCAG-TTTGTA 416 Query 418 AAGAATGTATATGGGAAGTAGGACAAGACGATGTAACCCCTATTTGTCGTATTTCTCGTG 477 ||||||||||||||||||| ||| |||| |||| || |||||||||||||||| |||||| Sbjct 417 AAGAATGTATATGGGAAGTGGGAAAAGATGATGAAAACCCTATTTGTCGTATTCCTCGTG 476 Query 478 AGAAGAAAAACAATCCATACTGTTTCGAATGGGAGGATGG 517 ||||| |||||||| ||||||||||| ||||||||||||| Sbjct 477 AGAAGGAAAACAATTCATACTGTTTCAAATGGGAGGATGG 516 > Ahg938457 jgi|Araly1|938457|scaffold_502648.1 Length=542 Score = 538 bits (291), Expect = 2e-152 Identities = 424/487 (87%), Gaps = 14/487 (3%) Strand=Plus/Plus Query 3 TCCTACATAATTTACTTAACCATGGCTTTCAC-AAGTAAACCTCATTTTATAATGTTGTG 61 |||||||| |||||| ||||||||||||||| || |||||||||||||||| || ||| Sbjct 1 TCCTACATTATTTACCCAACCATGGCTTTCACTAA-TAAACCTCATTTTATATTGATGTT 59 Query 62 TATGATCTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAG 120 |||||||| || || |||||||||||||||||||||||||| || | || ||||||||| Sbjct 60 TATGATCTCTTTTATTCTTATTCTTTTTGTGTCTGCATTAGATT-TGTCAAATGCTCCAG 118 Query 121 CGGAAGCACCAACTTCGGGCGGCGATGGCTTGTTACCTCTAAG-CGAAAAACATGTTGTA 179 | ||||| |||||||||| |||||| |||||||||||| | || || ||||||||||||| Sbjct 119 CAGAAGCCCCAACTTCGGACGGCGACGGCTTGTTACCT-TTAGCCGGAAAACATGTTGTA 177 Query 180 ATCCGCAAC-AAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGA 238 |||| |||| ||| ||||||| ||| |||| |||||||||||||||||||||||||| || Sbjct 178 ATCCACAACAAAG-TAAAAAACAGACAAATCTTGAATGTACATTGCAGATCTAGTGAGGA 236 Query 239 TGATTTTGGGCTTAAACATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAA 298 |||||||||| | |||||||| ||||||||| |||||| |||||||||| ||||||| Sbjct 237 TGATTTTGGGATGGTCCATATTCCATGGAATGGTACATGGGATTTCAGATTTCATGTTAA 296 Query 299 CTTTTTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATA-ATGGTGGATCTCATT 357 ||||| ||||||||||||||||||||||||||||| ||| ||| | || |||||||||| Sbjct 297 CTTTTCGAAAACTACGAAATTTCGTTGTCATTTTACATGGTATAGA-GGCGGATCTCATT 355 Query 358 ATTTTTATATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGAACTTCC-GATTTGT 416 |||||||||| ||||||| ||||||||||||||||||| ||||| | |||| | ||||| Sbjct 356 ATTTTTATATTTTTAAAGTATCAAGAGATGATAGTCCATTTGGACATTTTCCAG-TTTGT 414 Query 417 AAAGAATGTATATGGGAAGTAGGACAAGACGATGTAACCCCTATTTGTCGTATT-TCTCG 475 |||||||||||||||||||| ||| |||| |||| || |||||||||||||||| | ||| Sbjct 415 AAAGAATGTATATGGGAAGTGGGAAAAGATGATGAAAACCCTATTTGTCGTATTGT-TCG 473 Query 476 TGAGAAG 482 ||| ||| Sbjct 474 TGAAAAG 480 > Ahg938512 jgi|Araly1|938512|scaffold_502703.1 Length=538 Score = 392 bits (212), Expect = 1e-108 Identities = 419/515 (81%), Gaps = 29/515 (6%) Strand=Plus/Plus Query 10 TAATTTACTTAACCATGGCTTTCA-CAAGTAAACCTCATTTTATAATGTTGTGT-ATGAT 67 |||||||| ||||||| |||||| || ||| |||||| ||||| |||||| | || || Sbjct 7 TAATTTACACAACCATGTCTTTCATTAA-TAAGCCTCATGTTATATTGTTGT-TCATTAT 64 Query 68 CTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAGCGGAAG 126 || || |||| ||||||||||||| |||| |||| || | || ||| |||||||||| Sbjct 65 CTCTTCTACTTTTATTCTTTTTGTACCTGCGTTAGATT-TGTCAAATGTTCCAGCGGAAT 123 Query 127 CACCAACTTCGGGCG-GCGATGGCTTGTTACCTCTAAGC-GAAAAACATGTTGTAATCCG 184 |||||||||||| || | || ||||| |||||||| ||| | |||||||||||||||| | Sbjct 124 CACCAACTTCGGACGAG-GACGGCTTCTTACCTCT-AGCTGGAAAACATGTTGTAATCTG 181 Query 185 CAAC-AAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGATGATT 243 |||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 182 CAACAAAGTT-AAAAACAGAGAAACTTTGAATGTACATTGCAGATCTAGTGAAGATGATT 240 Query 244 TTGGGCTTAAAC-ATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAACTTT 302 | ||| |||| | |||||||||||||| | | |||||||| |||||| |||||||| || Sbjct 241 T-GGGATTAATCCATATTCCTTGGAATCATACTTGGGGTTTTAGATTTCATGTTAACATT 299 Query 303 TTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATA--ATGGTGGATCTCATTATT 360 | ||| |||| ||||||| |||||||||||| |||| | | || ||||||||||||| Sbjct 300 TGGAAATCTACAAAATTTCATTGTCATTTTACATGGC-TCGGA-GGAGGATCTCATTATT 357 Query 361 TTTA-TATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGA-ACTTCCGATTTGTAA 418 || | ||||||||||| ||| ||||| |||||| | ||||| | | | | ||||||| Sbjct 358 TT-ACTATATTTAAAGTATCGAGAGACGATAGTATAATTGGATATAAT---G-TTTGTAA 412 Query 419 AGAATGTATATGGGAAGTAGGAC-AAGACGATGTAACCCCTATTTGTCGTATTTCTCGTG 477 ||||||||| ||||| || ||| || |||||| || ||||||||||||| ||||||| | Sbjct 413 AGAATGTATTTGGGAGGTGGGAAGAA-ACGATGAAAACCCTATTTGTCGTGTTTCTCGCG 471 Query 478 AGAAGAAAAACAAT-CCATACTGTTTCGAATGGGA 511 | || | || | | || |||||||| ||||||| Sbjct 472 ATAA-ATCAATACTTCCCCACTGTTTCCAATGGGA 505 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19077794500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5