BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55252.1
Length=524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938456 jgi|Araly1|938456|scaffold_502647.1 638 0.0
Ahg938457 jgi|Araly1|938457|scaffold_502648.1 538 2e-152
Ahg938512 jgi|Araly1|938512|scaffold_502703.1 392 1e-108
> Ahg938456 jgi|Araly1|938456|scaffold_502647.1
Length=543
Score = 638 bits (345), Expect = 0.0
Identities = 463/520 (89%), Gaps = 8/520 (2%)
Strand=Plus/Plus
Query 2 CTCCTACATAATTTACTTAACCATGGCTTTCACAAGTAAACCTCATTTTATAATGTTGTG 61
||| |||||||||||| || | ||||||||||||| |||| ||||||||||||||||||
Sbjct 1 CTCTTACATAATTTACCTAGCTATGGCTTTCACAAATAAATCTCATTTTATAATGTTGTT 60
Query 62 TATGATCTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAG 120
||| |||| || |||||||||||| |||||||||||||||| || ||||| |||||||||
Sbjct 61 TATAATCTCTTCTACTCTTATTCTCTTTGTGTCTGCATTAGATT-TTTCTAATGCTCCAG 119
Query 121 CGGAAGCACCA-ACTTCGGGCGGCGATGGCTTGTTACCTCTAAG-CGAAAAACATGTTGT 178
| ||||||||| | |||| || ||| |||||||||||||| || |||||||||||||||
Sbjct 120 CAGAAGCACCAGGC-TCGGACGACGACGGCTTGTTACCTCT-AGCCGAAAAACATGTTGT 177
Query 179 AATCCGCAACAAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGA 238
||| ||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 178 AATTCGCAACAAGGTAAAAAACAGAGAAATATTGAATGTACATTGCAAATCTAGTGAAGA 237
Query 239 TGATTTTGGGCTTAAACATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAA 298
|||||||||| ||| ||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 238 TGATTTTGGGATTATCCATCTTCCTTGGAATGGTACATGGGGTTTCAGATTTCATGTTAA 297
Query 299 CTTTTTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATAATGGTGGATCTCATTA 358
| ||| |||| |||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 298 CATTTGGAAAAATACGAAATTTCGTTGTCATTTTACATGGCATAAAGGCGGATCTCATTA 357
Query 359 TTTTTATATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGAACTTCC-GATTTGTA 417
||||||||||||||||| |||||||||||||||| || ||||| || |||| | ||||||
Sbjct 358 TTTTTATATATTTAAAGTATCAAGAGATGATAGTGCATTTGGACAAATTCCAG-TTTGTA 416
Query 418 AAGAATGTATATGGGAAGTAGGACAAGACGATGTAACCCCTATTTGTCGTATTTCTCGTG 477
||||||||||||||||||| ||| |||| |||| || |||||||||||||||| ||||||
Sbjct 417 AAGAATGTATATGGGAAGTGGGAAAAGATGATGAAAACCCTATTTGTCGTATTCCTCGTG 476
Query 478 AGAAGAAAAACAATCCATACTGTTTCGAATGGGAGGATGG 517
||||| |||||||| ||||||||||| |||||||||||||
Sbjct 477 AGAAGGAAAACAATTCATACTGTTTCAAATGGGAGGATGG 516
> Ahg938457 jgi|Araly1|938457|scaffold_502648.1
Length=542
Score = 538 bits (291), Expect = 2e-152
Identities = 424/487 (87%), Gaps = 14/487 (3%)
Strand=Plus/Plus
Query 3 TCCTACATAATTTACTTAACCATGGCTTTCAC-AAGTAAACCTCATTTTATAATGTTGTG 61
|||||||| |||||| ||||||||||||||| || |||||||||||||||| || |||
Sbjct 1 TCCTACATTATTTACCCAACCATGGCTTTCACTAA-TAAACCTCATTTTATATTGATGTT 59
Query 62 TATGATCTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAG 120
|||||||| || || |||||||||||||||||||||||||| || | || |||||||||
Sbjct 60 TATGATCTCTTTTATTCTTATTCTTTTTGTGTCTGCATTAGATT-TGTCAAATGCTCCAG 118
Query 121 CGGAAGCACCAACTTCGGGCGGCGATGGCTTGTTACCTCTAAG-CGAAAAACATGTTGTA 179
| ||||| |||||||||| |||||| |||||||||||| | || || |||||||||||||
Sbjct 119 CAGAAGCCCCAACTTCGGACGGCGACGGCTTGTTACCT-TTAGCCGGAAAACATGTTGTA 177
Query 180 ATCCGCAAC-AAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGA 238
|||| |||| ||| ||||||| ||| |||| |||||||||||||||||||||||||| ||
Sbjct 178 ATCCACAACAAAG-TAAAAAACAGACAAATCTTGAATGTACATTGCAGATCTAGTGAGGA 236
Query 239 TGATTTTGGGCTTAAACATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAA 298
|||||||||| | |||||||| ||||||||| |||||| |||||||||| |||||||
Sbjct 237 TGATTTTGGGATGGTCCATATTCCATGGAATGGTACATGGGATTTCAGATTTCATGTTAA 296
Query 299 CTTTTTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATA-ATGGTGGATCTCATT 357
||||| ||||||||||||||||||||||||||||| ||| ||| | || ||||||||||
Sbjct 297 CTTTTCGAAAACTACGAAATTTCGTTGTCATTTTACATGGTATAGA-GGCGGATCTCATT 355
Query 358 ATTTTTATATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGAACTTCC-GATTTGT 416
|||||||||| ||||||| ||||||||||||||||||| ||||| | |||| | |||||
Sbjct 356 ATTTTTATATTTTTAAAGTATCAAGAGATGATAGTCCATTTGGACATTTTCCAG-TTTGT 414
Query 417 AAAGAATGTATATGGGAAGTAGGACAAGACGATGTAACCCCTATTTGTCGTATT-TCTCG 475
|||||||||||||||||||| ||| |||| |||| || |||||||||||||||| | |||
Sbjct 415 AAAGAATGTATATGGGAAGTGGGAAAAGATGATGAAAACCCTATTTGTCGTATTGT-TCG 473
Query 476 TGAGAAG 482
||| |||
Sbjct 474 TGAAAAG 480
> Ahg938512 jgi|Araly1|938512|scaffold_502703.1
Length=538
Score = 392 bits (212), Expect = 1e-108
Identities = 419/515 (81%), Gaps = 29/515 (6%)
Strand=Plus/Plus
Query 10 TAATTTACTTAACCATGGCTTTCA-CAAGTAAACCTCATTTTATAATGTTGTGT-ATGAT 67
|||||||| ||||||| |||||| || ||| |||||| ||||| |||||| | || ||
Sbjct 7 TAATTTACACAACCATGTCTTTCATTAA-TAAGCCTCATGTTATATTGTTGT-TCATTAT 64
Query 68 CTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAGCGGAAG 126
|| || |||| ||||||||||||| |||| |||| || | || ||| ||||||||||
Sbjct 65 CTCTTCTACTTTTATTCTTTTTGTACCTGCGTTAGATT-TGTCAAATGTTCCAGCGGAAT 123
Query 127 CACCAACTTCGGGCG-GCGATGGCTTGTTACCTCTAAGC-GAAAAACATGTTGTAATCCG 184
|||||||||||| || | || ||||| |||||||| ||| | |||||||||||||||| |
Sbjct 124 CACCAACTTCGGACGAG-GACGGCTTCTTACCTCT-AGCTGGAAAACATGTTGTAATCTG 181
Query 185 CAAC-AAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGATGATT 243
|||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 CAACAAAGTT-AAAAACAGAGAAACTTTGAATGTACATTGCAGATCTAGTGAAGATGATT 240
Query 244 TTGGGCTTAAAC-ATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAACTTT 302
| ||| |||| | |||||||||||||| | | |||||||| |||||| |||||||| ||
Sbjct 241 T-GGGATTAATCCATATTCCTTGGAATCATACTTGGGGTTTTAGATTTCATGTTAACATT 299
Query 303 TTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATA--ATGGTGGATCTCATTATT 360
| ||| |||| ||||||| |||||||||||| |||| | | || |||||||||||||
Sbjct 300 TGGAAATCTACAAAATTTCATTGTCATTTTACATGGC-TCGGA-GGAGGATCTCATTATT 357
Query 361 TTTA-TATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGA-ACTTCCGATTTGTAA 418
|| | ||||||||||| ||| ||||| |||||| | ||||| | | | | |||||||
Sbjct 358 TT-ACTATATTTAAAGTATCGAGAGACGATAGTATAATTGGATATAAT---G-TTTGTAA 412
Query 419 AGAATGTATATGGGAAGTAGGAC-AAGACGATGTAACCCCTATTTGTCGTATTTCTCGTG 477
||||||||| ||||| || ||| || |||||| || ||||||||||||| ||||||| |
Sbjct 413 AGAATGTATTTGGGAGGTGGGAAGAA-ACGATGAAAACCCTATTTGTCGTGTTTCTCGCG 471
Query 478 AGAAGAAAAACAAT-CCATACTGTTTCGAATGGGA 511
| || | || | | || |||||||| |||||||
Sbjct 472 ATAA-ATCAATACTTCCCCACTGTTTCCAATGGGA 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19077794500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5