BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55260.1
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485946 jgi|Araly1|485946|fgenesh2_kg.5__1938__AT3G55260.1 2778 0.0
> Ahg485946 jgi|Araly1|485946|fgenesh2_kg.5__1938__AT3G55260.1
Length=1824
Score = 2778 bits (1504), Expect = 0.0
Identities = 1696/1785 (95%), Gaps = 28/1785 (2%)
Strand=Plus/Plus
Query 39 GAACAATCCTCCATTGACCCAA-A----TTTCGAAAATGTCAACGAATCTTCTTCGTCTT 93
|||||||||||| |||||| || | |||||||||||||| |||||||||||||||||
Sbjct 1 GAACAATCCTCCGTTGACCAAACACTCTTTTCGAAAATGTCACCGAATCTTCTTCGTCTT 60
Query 94 ATTCTCC---------TATTCATCACTTTATCTATCACTTCATCTCTGTCAACTCCGTCG 144
|| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTTCCTATTGATGATATTCATCTCTTTATCTATCACTTCATCTCTGTCAACTCCGTCG 120
Query 145 CCGGCTGATTCTCCTCCTTATCTATGGCCGTTACCGGCGGAGTTTTCGTTCGGAAACGAA 204
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 121 CCGGCTGATTCTCCTCCTTATCTATGGCCGTTGCCGGCAGAGTTTTCGTTCGGAAACGAG 180
Query 205 ACGCTCTCGGTGGATCCCACCGTGACTCTAATCGTAGCTGGAAATGGCGGTGGATCTCTG 264
|| |||||||||||||| || ||||||||||| |||||||||||||||||||||||| |
Sbjct 181 ACACTCTCGGTGGATCCGGCCTTGACTCTAATCATAGCTGGAAATGGCGGTGGATCTCCG 240
Query 265 ATTATTAGAGCTGCGTTTGATAGGTATATGGGTATAATCTTTAAACACGCTTCTGGTAGA 324
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTGTTAGAGCTGCGTTTGATAGGTATATGGGTATAATCTTTAAACACGCTTCTGGTAGA 300
Query 325 GGTTCTCTATTGTCGAGGATTAGATTTCTGAAAATGGTTGAGTATGATATCACTTCTTTG 384
|||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 GGTTCTCTATTGGCGAGAATTAGATTTCTGAGAATGGTTGAGTATGATATCACTTCTTTG 360
Query 385 AAGATCGTTGTTCATTCTGATTCTGAGGAGCTTCAATTGGGTGTGGATGAGAGTTATACA 444
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGATCGTTGTTCACTCTGATTCTGAGGAGCTTCAATTGGGTGTGGATGAGAGTTATACA 420
Query 445 TTGATGGTGTCGAAGAAGAACGAGCAATCGATTGTTGGAGCAGCCACGATCGAGGCTAAT 504
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TTGATGGTTTCGAAGAAGAACGAGCAATCGATTGTTGGAGCTGCCACGATCGAGGCTAAT 480
Query 505 ACAGTTTATGGTGCACTTAGAGGATTGGAGACATTTAGCCAGTTGTGTGCCTTTGATTAT 564
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 ACAGTCTATGGTGCACTTAGAGGATTGGAGACATTTAGCCAATTGTGTGCCTTTGATTAT 540
Query 565 ATAACCAAATCTGTGCAAATATATAAAGCACCATGGTATATTCAAGATAAACCTAGATTT 624
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 CTAACCAAATCTGTGCAAATATATAAAGCACCCTGGTATATTCAAGATAAACCTAGATTC 600
Query 625 GGATACCGCGGTCTGCTGATAGATACATCAAGACATTATTTACCAATTGATGTTATTAAG 684
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 GGATACCGCGGTCTGCTAATAGATACATCAAGACATTTTTTACCAATTGATGTTATTAAG 660
Query 685 CAAATAATCGAATCCATGTCCTTTGCCAAACTTAATGTCCTGCATTGGCACATTGTAGAC 744
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 CAAATAATCGAATCCATGTCCTTCGCCAAACTTAATGTCCTGCATTGGCACATTGTAGAC 720
Query 745 GAGCAATCATTTCCTCTTGAAACTCCTACATATCCTAATTTGTGGAAAGGAGCTTATTCG 804
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGCAATCATTTCCTTTTGAAACTCCTACATATCCTAATTTGTGGAAAGGAGCTTATTCG 780
Query 805 AGATGGGAACGTTATACAGTTGAGGATGCCTCTGAGATTGTCAGGTTTGCCAAAATGAGA 864
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 AGATGGGAACGTTACACAGTTGAAGATGCCTCTGAGATTGTCAGGTTTGCCAAAATGAGA 840
Query 865 GGTATTAATGTCATGGCTGAAGTAGATGTCCCTGGCCATGCGGAATCGTGGGGAACTGGA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGTATTAATGTCATGGCTGAAGTAGATGTCCCTGGCCATGCGGAATCGTGGGGAACTGGA 900
Query 925 TACCCTGATCTTTGGCCGTCTCTGTCTTGCCGAGAGCCCCTTGATGTTACTAAAAACTTT 984
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 TACCCTGATCTTTGGCCGTCTCTGTCTTGCCGAGAGCCCCTTGATGTTACTAAAAATTTT 960
Query 985 ACATTCGATGTGATTTCTGGCATTTTAGCAGATATGAGAAAGATATTCCCATTTGAGCTT 1044
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 961 ACATTCGATGTGATTTCTGGCATTTTGGCAGATATGAGAAAGATATTTCCATTTGAGCTT 1020
Query 1045 TTCCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAAAAACACAACTCATGTTAAA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAAAAACACAACTCATGTTAAA 1080
Query 1105 GAATGGCTTCAGGGTCGCAACTTCACGACTAAGGACGCATATAAATACTTTGTACTCCGA 1164
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 GAATGGCTTCAGGGTCGCAACTTCACTACTAAGGACGCATATAAATACTTTGTACTCCGA 1140
Query 1165 GCGCAACAGATAGCTATATCGAAAAATTGGACACCTGTCAACTGGGAAGAAACCTTCAGT 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCGCAACAGATAGCTATATCGAAAAATTGGACACCTGTCAACTGGGAAGAAACCTTCAGT 1200
Query 1225 TCCTTTGGAAAAGATCTTGATCCGCGGACTGTGATTCAAAACTGGCTAGTGTCTGATATA 1284
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1201 TCCTTTGGAAAAGATCTTGATCCGGGGACTGTGATTCAAAACTGGCTAGTGTCTGATATA 1260
Query 1285 TGTCAAAAAGCAGTAGCAAAAGGATTCAGGTGCATTTTCAGTAACCAAGGATATTGGTAC 1344
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGTCAAAAAGCGGTAGCAAAAGGATTCAGGTGCATTTTCAGTAACCAAGGATATTGGTAT 1320
Query 1345 CTCGACCATTTAGATGTTCCGTGGGAAGAGGTTTATAACACCGAGCCTCTAAATGGAATC 1404
||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1321 CTCGACCATCTAGATGTGCCGTGGGACGAGGTTTATAACACCGAGCCTCTAAATGGAATC 1380
Query 1405 GAGGATCCTTCTCTCCAAAAGCTTGTCATCGGAGGAGAAGTTTGCATGTGGGGTGAAACA 1464
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1381 GAGGATCCTTCTCTCCAAAAGCTGGTTATCGGAGGAGAAGTTTGCATGTGGGGTGAAACA 1440
Query 1465 GCTGATACATCCGTTGTCCTTCAGACCATTTGGCCTCGTGCTGCAGCAGCTGCAGAACGG 1524
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1441 GCTGATACATCCGTTGTCCTTCAGACCATTTGGCCGCGTGCTGCAGCAGCTGCAGAACGG 1500
Query 1525 ATGTGGAGCACCAGAGAGGCCGTGTCAAAGGGGAACATAACGTTAACCGCATTGCCACGT 1584
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1501 ATGTGGAGCACCAGAGAGGCCGTGTCAAAGGGGAACATAACGTTAACTGCATTGCCACGT 1560
Query 1585 CTACACTACTTCAGATGTCTACTGAATAACCGTGGCGTTCCAGCGGCTCCAGTGGATAAC 1644
|||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 1561 CTACACTATTTCAGATGTCTACTGAATAACCGCGGAGTTCCAGCAGCTCCAGTCGATAAC 1620
Query 1645 TTTTACGCACGAAGACCCCCCTTGGGACCTGGCTCTTGCTATGCTCAGTGATCCAAAACG 1704
||||||||| ||||||| || | ||||||||| ||||||||||||||||||||||||||
Sbjct 1621 TTTTACGCAAGAAGACCGCCATCGGGACCTGGTTCTTGCTATGCTCAGTGATCCAAAACA 1680
Query 1705 TTTCTTCTCATTGTACTATATGTAATGT-C-T--CG--TCTGAAATCTGGTTGTCACGTT 1758
|||||||||||||||||||||||||||| | | | |||||||||||||||| |
Sbjct 1681 TTTCTTCTCATTGTACTATATGTAATGTACGTGTCTCATCTGAAATCTGGTTGT----T- 1735
Query 1759 GCTTTTTCTGTTCTAAATTGTGTGCTTCTCAATTTACTCAAATCA 1803
|| |||||| |||||||||||| |||||||||| ||||||||||
Sbjct 1736 GCATTTTCTATTCTAAATTGTG--CTTCTCAATT-ACTCAAATCA 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71876292315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5