BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55260.1 Length=1913 Score E Sequences producing significant alignments: (Bits) Value Ahg485946 jgi|Araly1|485946|fgenesh2_kg.5__1938__AT3G55260.1 2778 0.0 > Ahg485946 jgi|Araly1|485946|fgenesh2_kg.5__1938__AT3G55260.1 Length=1824 Score = 2778 bits (1504), Expect = 0.0 Identities = 1696/1785 (95%), Gaps = 28/1785 (2%) Strand=Plus/Plus Query 39 GAACAATCCTCCATTGACCCAA-A----TTTCGAAAATGTCAACGAATCTTCTTCGTCTT 93 |||||||||||| |||||| || | |||||||||||||| ||||||||||||||||| Sbjct 1 GAACAATCCTCCGTTGACCAAACACTCTTTTCGAAAATGTCACCGAATCTTCTTCGTCTT 60 Query 94 ATTCTCC---------TATTCATCACTTTATCTATCACTTCATCTCTGTCAACTCCGTCG 144 || ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 CTTTTCCTATTGATGATATTCATCTCTTTATCTATCACTTCATCTCTGTCAACTCCGTCG 120 Query 145 CCGGCTGATTCTCCTCCTTATCTATGGCCGTTACCGGCGGAGTTTTCGTTCGGAAACGAA 204 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 121 CCGGCTGATTCTCCTCCTTATCTATGGCCGTTGCCGGCAGAGTTTTCGTTCGGAAACGAG 180 Query 205 ACGCTCTCGGTGGATCCCACCGTGACTCTAATCGTAGCTGGAAATGGCGGTGGATCTCTG 264 || |||||||||||||| || ||||||||||| |||||||||||||||||||||||| | Sbjct 181 ACACTCTCGGTGGATCCGGCCTTGACTCTAATCATAGCTGGAAATGGCGGTGGATCTCCG 240 Query 265 ATTATTAGAGCTGCGTTTGATAGGTATATGGGTATAATCTTTAAACACGCTTCTGGTAGA 324 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATTGTTAGAGCTGCGTTTGATAGGTATATGGGTATAATCTTTAAACACGCTTCTGGTAGA 300 Query 325 GGTTCTCTATTGTCGAGGATTAGATTTCTGAAAATGGTTGAGTATGATATCACTTCTTTG 384 |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 301 GGTTCTCTATTGGCGAGAATTAGATTTCTGAGAATGGTTGAGTATGATATCACTTCTTTG 360 Query 385 AAGATCGTTGTTCATTCTGATTCTGAGGAGCTTCAATTGGGTGTGGATGAGAGTTATACA 444 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAGATCGTTGTTCACTCTGATTCTGAGGAGCTTCAATTGGGTGTGGATGAGAGTTATACA 420 Query 445 TTGATGGTGTCGAAGAAGAACGAGCAATCGATTGTTGGAGCAGCCACGATCGAGGCTAAT 504 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 421 TTGATGGTTTCGAAGAAGAACGAGCAATCGATTGTTGGAGCTGCCACGATCGAGGCTAAT 480 Query 505 ACAGTTTATGGTGCACTTAGAGGATTGGAGACATTTAGCCAGTTGTGTGCCTTTGATTAT 564 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 481 ACAGTCTATGGTGCACTTAGAGGATTGGAGACATTTAGCCAATTGTGTGCCTTTGATTAT 540 Query 565 ATAACCAAATCTGTGCAAATATATAAAGCACCATGGTATATTCAAGATAAACCTAGATTT 624 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 541 CTAACCAAATCTGTGCAAATATATAAAGCACCCTGGTATATTCAAGATAAACCTAGATTC 600 Query 625 GGATACCGCGGTCTGCTGATAGATACATCAAGACATTATTTACCAATTGATGTTATTAAG 684 ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 601 GGATACCGCGGTCTGCTAATAGATACATCAAGACATTTTTTACCAATTGATGTTATTAAG 660 Query 685 CAAATAATCGAATCCATGTCCTTTGCCAAACTTAATGTCCTGCATTGGCACATTGTAGAC 744 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 661 CAAATAATCGAATCCATGTCCTTCGCCAAACTTAATGTCCTGCATTGGCACATTGTAGAC 720 Query 745 GAGCAATCATTTCCTCTTGAAACTCCTACATATCCTAATTTGTGGAAAGGAGCTTATTCG 804 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GAGCAATCATTTCCTTTTGAAACTCCTACATATCCTAATTTGTGGAAAGGAGCTTATTCG 780 Query 805 AGATGGGAACGTTATACAGTTGAGGATGCCTCTGAGATTGTCAGGTTTGCCAAAATGAGA 864 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 781 AGATGGGAACGTTACACAGTTGAAGATGCCTCTGAGATTGTCAGGTTTGCCAAAATGAGA 840 Query 865 GGTATTAATGTCATGGCTGAAGTAGATGTCCCTGGCCATGCGGAATCGTGGGGAACTGGA 924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GGTATTAATGTCATGGCTGAAGTAGATGTCCCTGGCCATGCGGAATCGTGGGGAACTGGA 900 Query 925 TACCCTGATCTTTGGCCGTCTCTGTCTTGCCGAGAGCCCCTTGATGTTACTAAAAACTTT 984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 901 TACCCTGATCTTTGGCCGTCTCTGTCTTGCCGAGAGCCCCTTGATGTTACTAAAAATTTT 960 Query 985 ACATTCGATGTGATTTCTGGCATTTTAGCAGATATGAGAAAGATATTCCCATTTGAGCTT 1044 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 961 ACATTCGATGTGATTTCTGGCATTTTGGCAGATATGAGAAAGATATTTCCATTTGAGCTT 1020 Query 1045 TTCCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAAAAACACAACTCATGTTAAA 1104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTCCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAAAAACACAACTCATGTTAAA 1080 Query 1105 GAATGGCTTCAGGGTCGCAACTTCACGACTAAGGACGCATATAAATACTTTGTACTCCGA 1164 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1081 GAATGGCTTCAGGGTCGCAACTTCACTACTAAGGACGCATATAAATACTTTGTACTCCGA 1140 Query 1165 GCGCAACAGATAGCTATATCGAAAAATTGGACACCTGTCAACTGGGAAGAAACCTTCAGT 1224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GCGCAACAGATAGCTATATCGAAAAATTGGACACCTGTCAACTGGGAAGAAACCTTCAGT 1200 Query 1225 TCCTTTGGAAAAGATCTTGATCCGCGGACTGTGATTCAAAACTGGCTAGTGTCTGATATA 1284 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1201 TCCTTTGGAAAAGATCTTGATCCGGGGACTGTGATTCAAAACTGGCTAGTGTCTGATATA 1260 Query 1285 TGTCAAAAAGCAGTAGCAAAAGGATTCAGGTGCATTTTCAGTAACCAAGGATATTGGTAC 1344 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TGTCAAAAAGCGGTAGCAAAAGGATTCAGGTGCATTTTCAGTAACCAAGGATATTGGTAT 1320 Query 1345 CTCGACCATTTAGATGTTCCGTGGGAAGAGGTTTATAACACCGAGCCTCTAAATGGAATC 1404 ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1321 CTCGACCATCTAGATGTGCCGTGGGACGAGGTTTATAACACCGAGCCTCTAAATGGAATC 1380 Query 1405 GAGGATCCTTCTCTCCAAAAGCTTGTCATCGGAGGAGAAGTTTGCATGTGGGGTGAAACA 1464 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1381 GAGGATCCTTCTCTCCAAAAGCTGGTTATCGGAGGAGAAGTTTGCATGTGGGGTGAAACA 1440 Query 1465 GCTGATACATCCGTTGTCCTTCAGACCATTTGGCCTCGTGCTGCAGCAGCTGCAGAACGG 1524 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1441 GCTGATACATCCGTTGTCCTTCAGACCATTTGGCCGCGTGCTGCAGCAGCTGCAGAACGG 1500 Query 1525 ATGTGGAGCACCAGAGAGGCCGTGTCAAAGGGGAACATAACGTTAACCGCATTGCCACGT 1584 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1501 ATGTGGAGCACCAGAGAGGCCGTGTCAAAGGGGAACATAACGTTAACTGCATTGCCACGT 1560 Query 1585 CTACACTACTTCAGATGTCTACTGAATAACCGTGGCGTTCCAGCGGCTCCAGTGGATAAC 1644 |||||||| ||||||||||||||||||||||| || |||||||| |||||||| |||||| Sbjct 1561 CTACACTATTTCAGATGTCTACTGAATAACCGCGGAGTTCCAGCAGCTCCAGTCGATAAC 1620 Query 1645 TTTTACGCACGAAGACCCCCCTTGGGACCTGGCTCTTGCTATGCTCAGTGATCCAAAACG 1704 ||||||||| ||||||| || | ||||||||| |||||||||||||||||||||||||| Sbjct 1621 TTTTACGCAAGAAGACCGCCATCGGGACCTGGTTCTTGCTATGCTCAGTGATCCAAAACA 1680 Query 1705 TTTCTTCTCATTGTACTATATGTAATGT-C-T--CG--TCTGAAATCTGGTTGTCACGTT 1758 |||||||||||||||||||||||||||| | | | |||||||||||||||| | Sbjct 1681 TTTCTTCTCATTGTACTATATGTAATGTACGTGTCTCATCTGAAATCTGGTTGT----T- 1735 Query 1759 GCTTTTTCTGTTCTAAATTGTGTGCTTCTCAATTTACTCAAATCA 1803 || |||||| |||||||||||| |||||||||| |||||||||| Sbjct 1736 GCATTTTCTATTCTAAATTGTG--CTTCTCAATT-ACTCAAATCA 1777 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71876292315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5