BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55280.1
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485949 jgi|Araly1|485949|fgenesh2_kg.5__1941__AT3G55280.1 918 0.0
> Ahg485949 jgi|Araly1|485949|fgenesh2_kg.5__1941__AT3G55280.1
Length=724
Score = 918 bits (497), Expect = 0.0
Identities = 554/582 (95%), Gaps = 1/582 (0%)
Strand=Plus/Plus
Query 1 ACGGTTTTGTTTCATTTTCACTTCCCTTAGAATAAATAAAAACCACCAAGCAACTTGGAT 60
||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |
Sbjct 1 ACGCTTTTGTTTCATTTTCACATCCCTTAGAATAAATAAAAACCAGC-AGCAACTTGAAG 59
Query 61 CTACTCTAGGGTTTCTGTTTCGCCGCTCAGGTTTCGTGAAAAGAATCTATCTTGAGCAAT 120
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 60 CTGTTCTAGGGTTTCGGTTTCGCCGCTCAGGTTTCGTGAAAAGAATCTATCTTCAGTAAT 119
Query 121 GTCTCCAGCTAAAGTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTCTCCAGCTAAAGTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGC 179
Query 181 TGCGAAAGCAGTGAAATCTGGCCAAATCGTTAAAAAGCCTGCGAAGAAGATCAGGACAAA 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 TGCGAAAGCAGTGAAATCTGGCCAAATCCTTAAAAAGCCTGCGAAGAAGATCAGGACAAA 239
Query 241 GGTTACTTTCCACAGGCCAAAGACATTGACCGTTCCTAGAAAGCCTAAGTACCCAAAGAT 300
||| ||||||||||||||||||||||||||| | | || || ||||||||||||| |||
Sbjct 240 GGTCACTTTCCACAGGCCAAAGACATTGACCCTGCAGAGGAATCCTAAGTACCCAAGGAT 299
Query 301 CAGTGCTACTCCAAGGAACAAATTGGATCATTACCAGATCCTCAAGTACCCTCTCACTAC 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 CAGTGCTACTCCAAGGAACAAATTGGATCACTACCAGATCCTCAAGTACCCTCTCACTAC 359
Query 361 TGAATCTGCCATGAAAAAGATTGAAGACAACAACACCTTAGTCTTCATTGTTGACATCCG 420
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGAATCTGCCATGAAGAAGATCGAAGACAACAACACCTTAGTCTTCATTGTTGACATCCG 419
Query 421 TGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAA 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCTGACAAGAAGAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAA 479
Query 481 AGTCAACACCCTCATTAGGCCCGATGGAACAAAGAAGGCGTATGTGAGGTTGACTCCTGA 540
||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 480 AGTTAACACCCTCATTAGGACCGATGGAACGAAGAAGGCGTATGTGAGGTTGACTCCTGA 539
Query 541 TTATGATGCTTTGGATGTGGCTAACAAAATCGGGATCATCTA 582
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTACGATGCTTTGGATGTGGCTAACAAAATCGGGATCATCTA 581
Score = 198 bits (107), Expect = 4e-50
Identities = 134/146 (92%), Gaps = 5/146 (3%)
Strand=Plus/Plus
Query 615 TTCTGGTTTTTCTCTTCCATAGTCTCAGTTTTGCTAGAGAAGTTAAGATATTACTATCAC 674
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 583 TTCTGGGTTTTCTCTTCCATAGTCTCAGTTTTGCTAGAGAAGTTAAGATATTAC---CAT 639
Query 675 CATCTCTTTGTTATGCTTTTATCTTTGGATTCAAAAAGA-TTATATGTTTGGTATTTGTT 733
|||||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 640 CATCTCTTTGTTATGC-TTTATCTTTTGATTCAGAAAGATTTATATGTTTGGTATTTGTT 698
Query 734 GATGCGTCATAGTTTCTATTCAGATC 759
||||||||| ||||||| || |||||
Sbjct 699 GATGCGTCAAAGTTTCTTTTTAGATC 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28515941916
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5