BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55290.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485952 jgi|Araly1|485952|fgenesh2_kg.5__1944__AT3G55290.1 1306 0.0
Ahg907180 jgi|Araly1|907180|Al_scaffold_0002_261 939 0.0
Ahg480684 jgi|Araly1|480684|fgenesh2_kg.3__3385__AT2G17845.1 307 9e-83
> Ahg485952 jgi|Araly1|485952|fgenesh2_kg.5__1944__AT3G55290.1
Length=898
Score = 1306 bits (707), Expect = 0.0
Identities = 846/912 (93%), Gaps = 14/912 (2%)
Strand=Plus/Plus
Query 39 AATATGAGCAATCATCAAACTCAGGTGTTGAAGCTATTGGAGCCATGGTGTGAACTTAAA 98
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1 AATATGAGCAATCATCAAACTCAGGTGTTGAAGCAATTGGAGCCATGGTGTGAGCTTAAA 60
Query 99 GACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATTGGAAGAGAGATCTGTCTTGAT 158
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAGATCTGTCTTGAT 120
Query 159 CTTGCCAAAGCTGGTTGCCAGGTTATTGCAGCAGCTCGTCGTGTTGATCGACTCAACTCT 218
||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||
Sbjct 121 CTTGCCAAAGCTGGTTGTAAGATTATTGCAGCAGCTCGTCGTGTCGATCGTCTCAACTCT 180
Query 219 CTCTGCTCTGAAATCAACAGCTTCAGTTCAACTGGAATCCAAGCCGCAGCTCTTGAGTTA 278
|||||||||||||||||||||| || |||||| || |||||||||||||||||||| ||
Sbjct 181 CTCTGCTCTGAAATCAACAGCTCCAATTCAACCGGGGTCCAAGCCGCAGCTCTTGAGCTA 240
Query 279 GACGTTTCATCAGACGCAGCCACCATTCAAAAAGCGGTCAGGGAAGCTTGGGACATCTTT 338
|||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 241 GACGTTTCATCAGATGCAGCCACCATTCAAAAAGCGATAAGGGAAGCTTGGGACATCTTT 300
Query 339 GGAAAGATCGATGCATTGATCAACAATGCTGGAATCAGAGGCAATGTCAAGTCGAGTTTG 398
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GGAAAGATCGATGCGTTGATCAACAATGCCGGAATCAGAGGCAATGTCAAGTCGAGTTTG 360
Query 399 GATTTGTCAGAGGACGAATGGGACAACGTCTTCAAGACCAACTTAAAGGGTCCTTGGTTA 458
|||||||| ||||| |||||||||||||||||||| || ||||||| ||| |||||||||
Sbjct 361 GATTTGTCGGAGGATGAATGGGACAACGTCTTCAAAACTAACTTAACGGGACCTTGGTTA 420
Query 459 GTATCCAAACATGTTTGTATGTTAATGCGTGACGCTAAACGAGGTGGCTCGGTGATAAAC 518
||||| ||| |||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 421 GTATCTAAATATGTTTGTGTTTTAATGCGTGACGCTAAAAGAGGTGGCTCGGTGATAAAC 480
Query 519 ATCTCATCGATCGCCGGGATCCGGGGTATGTTGCCCGGTGGACTTGCTTATGCTTGTTCC 578
|||||||| || |||||| |||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 481 ATCTCATCAATTGCCGGGGTCCGCGGTATCTTGCCCGGTGGACTTGCATATGCTTGTTCC 540
Query 579 AAAGGCGGTGTTGACACCATGTCAAGGATGATGGCACTTGAGTTAGGTGTTCATAAGATC 638
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 541 AAAGGCGGTGTTGACACCATGTCAAGGATGATGGCAATTGAGTTAGGTGTTCACAAGATC 600
Query 639 AGAGTGAACTCGATCGCACCGGGGCTTTTCAAGTCAGAGATCACACAAGGTCTTATGCAA 698
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGTGAACTCGATTGCGCCAGGGCTTTTCAAGTCAGAGATCACACAAGGTCTTATGCAA 660
Query 699 AAGGAGTGGCTCAAGAATGTTACCGAGAGGACTGTGCCGTTAAAGGTGCAACAGACCGTT 758
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGAATGGCTCAAGAATGTGACCGAGAGGACTGTGCCGTTAAAGGTGCAACAGACCGTT 720
Query 759 GATCCAGGGCTTACTTCTCTGGTTCGCTATCTCATTCATGACTCTTCTCAATATATATCC 818
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATCCAGGGCTTACTTCTCTCGTTCGCTATCTCATTCATGACTCTTCTCAATATATATCC 780
Query 819 GGGAATACATACATTGTTGATTCCGGTGCTACATTGCCCGGTGTGCCTATCTTTTCATCT 878
||||||||||||||||| ||||| || |||||||||||||||||||| || |||||||||
Sbjct 781 GGGAATACATACATTGTCGATTCTGGAGCTACATTGCCCGGTGTGCCCATTTTTTCATCT 840
Query 879 CTCTGAAAATCGAACCTTATAATATCTTATCTTGTGCAATAATAAGTGAATACATTTACT 938
|||||||| | ||||| ||| ||||||||||||||||||||||||||
Sbjct 841 CTCTGAAAGTTGAACC---------CTT-----GTGCAATAATAAGTGAATACATTTACA 886
Query 939 CATTCTCTACTA 950
||||||||||||
Sbjct 887 CATTCTCTACTA 898
> Ahg907180 jgi|Araly1|907180|Al_scaffold_0002_261
Length=873
Score = 939 bits (508), Expect = 0.0
Identities = 729/835 (87%), Gaps = 17/835 (2%)
Strand=Plus/Plus
Query 60 CAGGTGTTGAAGCTATTGGAGCCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACA 119
|||||||||| || |||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 46 CAGGTGTTGAGGCAATTGGAGCCATGGTGTGAGCTTAATGGTAAAGTGGTTCTTGTGACA 105
Query 120 GGAGCTTCCTCTGGTATTGGAAGAGAGATCTGTCTTGATCTTGCCAAAGCTGGTTGCCAG 179
||||||||||||||||| || |||||||||||| ||||||||| |||||||||||| ||
Sbjct 106 GGAGCTTCCTCTGGTATAGGGAGAGAGATCTGTATTGATCTTGGCAAAGCTGGTTGTAAG 165
Query 180 GTTATTGCAGCAGCTCGTCGTGTTGATCGACTCAACTCTCTCTGCTCTGAAATCAACAGC 239
|||||||||| ||||||||||||||||| ||| | |||||||| | |||||||||||||
Sbjct 166 ATTATTGCAGCGGCTCGTCGTGTTGATCGTCTCGATTCTCTCTGTTTTGAAATCAACAGC 225
Query 240 TTCAGTTCAACTGGAATCCAAGCCGCAGCTCTTGAGTTAGACGTTTCATCAGACGCAGCC 299
|| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |
Sbjct 226 TTTGGTTTAACTGGAATTCAAGCCGCAGCTCTTGAGTTAGATGTTTCATCAGACGCAGAC 285
Query 300 ACCATTCAAAAAGCGGTCAGGGAAGCTTGGGACATCTTTGGAAAGATCGATGCATTGATC 359
|| |||| ||||| ||| | ||||||||||| |||||||||||||| |||| |||||
Sbjct 286 ACTATTCGAAAAGTGGTTAAAGAAGCTTGGGAAATCTTTGGAAAGATAGATGTTTTGATT 345
Query 360 AACAATGCTGGAATCAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAGAGGACGAATGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 346 AACAATGCTGGAATCAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAGAAGAAGAATGG 405
Query 420 GACAACGTCTTCAAGA-CCAACTTAAAGGG-TCCTTGGTTAGTATCCAAACAT-GTTTGT 476
|| || ||||| | || ||||||||| || || |||||||||||| ||| | || ||
Sbjct 406 GATAAAGTCTTTA-GAACCAACTTAACTGGATC-TTGGTTAGTATCTAAAT-TCGTCGGT 462
Query 477 ATGTTAATGCGTGACGCTAAACGAGGTGGCTCGGTGATAAACATCTCATCGATCGCCGGG 536
| || ||||||||||||||||| ||||||||||||||||||||||| |||||| | |||
Sbjct 463 GTTTTGATGCGTGACGCTAAACGTGGTGGCTCGGTGATAAACATCTCGTCGATCTCTGGG 522
Query 537 AT-C-CGG-GGTATGTTGCCCGGTGGACTTGCTTATGCTTGTTCCAAAGGCGGTGTTGAC 593
| | | | ||| | ||| ||| | ||||| |||||||||||||||||||||||||||
Sbjct 523 CTTCACCGTGGTTTACGGCCAGGTTGTCTTGCGTATGCTTGTTCCAAAGGCGGTGTTGAC 582
Query 594 ACCATGTCAAGGATGATGGC-ACTTGAGTTAGGTGTTCATAAGATCAGAGTGAACTCGAT 652
|||||| | ||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 583 ACCATGACGAGGATGATGGCTA-TTGAGTTAGGTGTTTATAAGATCAGAGTGAACTCGAT 641
Query 653 CGCACCGGGGCTTTTCAAGTCAGAGATCACACAAGGTCTTATGCA-AAAGGAGTGGCTCA 711
||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||
Sbjct 642 CGCACCGGGGCTTTTCAGGTCAGAGATCACACAAGGTCTTATGCAGAAAGAA-TGGCTCA 700
Query 712 AGAATGTTACCGAGAGGA-CTGTGCCGTTAAAGGTGCAACAGACCGTTGATCCAGGGCTT 770
|||| ||||| || | || |||| ||||||||| |||||||||| || ||||||||||||
Sbjct 701 AGAAAGTTACGGA-ACGAACTGTACCGTTAAAGATGCAACAGACTGTGGATCCAGGGCTT 759
Query 771 ACTTCTCTGGTTCGCTATCTCATTCATGACTCTTCTCAATATAT-ATCCGGGAATACATA 829
|| ||||| || || |||||||||||||| |||||||||||| | | | |||||||| ||
Sbjct 760 ACATCTCTCGTGCGTTATCTCATTCATGATTCTTCTCAATATGTCA-CTGGGAATACTTA 818
Query 830 CATTGTTGATTCCGGTGCTACATTGCCCGGTGTGCCTATCTTTTCATCTCTCTGA 884
|||||| ||||| || |||||||||||||||||||| |||||||| |||||||||
Sbjct 819 CATTGTCGATTCTGGAGCTACATTGCCCGGTGTGCCCATCTTTTCTTCTCTCTGA 873
> Ahg480684 jgi|Araly1|480684|fgenesh2_kg.3__3385__AT2G17845.1
Length=837
Score = 307 bits (166), Expect = 9e-83
Identities = 214/237 (90%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 81 CCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATTGGA 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 91 CCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGA 150
Query 141 AGAGAGATCTGTCTTGATCTTGCCAAAGCTGGTTGCCAGGTTATTGCAGCAGCTCGTCGT 200
|||||| | ||||||||||| ||||||||||| || || |||| |||| ||||||||||
Sbjct 151 AGAGAGGTATGTCTTGATCTAGCCAAAGCTGGCTGTAAGATTATCGCAGAAGCTCGTCGT 210
Query 201 GTTGATCGACTCAACTCTCTCTGCTCTGAAATCAACAGCTTC-AGT-T-CAACTGGAATC 257
|| ||||| ||||| ||||||||||||||||| || |||||| | | | |||| ||| ||
Sbjct 211 GTCGATCGTCTCAAATCTCTCTGCTCTGAAATAAATAGCTTCGAATATTCAACCGGACTC 270
Query 258 CAAGCCGCAGCTCTTGAGTTAGACGTTTCATCAGACGCAGCCACCATTCAAAAAGCG 314
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 271 CAAGCCGCAGCTCTTGAGCTAGACGTTTCATCAGACGCACCCACCATTCAAAAAGCG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5