BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55290.1 Length=951 Score E Sequences producing significant alignments: (Bits) Value Ahg485952 jgi|Araly1|485952|fgenesh2_kg.5__1944__AT3G55290.1 1306 0.0 Ahg907180 jgi|Araly1|907180|Al_scaffold_0002_261 939 0.0 Ahg480684 jgi|Araly1|480684|fgenesh2_kg.3__3385__AT2G17845.1 307 9e-83 > Ahg485952 jgi|Araly1|485952|fgenesh2_kg.5__1944__AT3G55290.1 Length=898 Score = 1306 bits (707), Expect = 0.0 Identities = 846/912 (93%), Gaps = 14/912 (2%) Strand=Plus/Plus Query 39 AATATGAGCAATCATCAAACTCAGGTGTTGAAGCTATTGGAGCCATGGTGTGAACTTAAA 98 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1 AATATGAGCAATCATCAAACTCAGGTGTTGAAGCAATTGGAGCCATGGTGTGAGCTTAAA 60 Query 99 GACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATTGGAAGAGAGATCTGTCTTGAT 158 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 GACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAGATCTGTCTTGAT 120 Query 159 CTTGCCAAAGCTGGTTGCCAGGTTATTGCAGCAGCTCGTCGTGTTGATCGACTCAACTCT 218 ||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||| Sbjct 121 CTTGCCAAAGCTGGTTGTAAGATTATTGCAGCAGCTCGTCGTGTCGATCGTCTCAACTCT 180 Query 219 CTCTGCTCTGAAATCAACAGCTTCAGTTCAACTGGAATCCAAGCCGCAGCTCTTGAGTTA 278 |||||||||||||||||||||| || |||||| || |||||||||||||||||||| || Sbjct 181 CTCTGCTCTGAAATCAACAGCTCCAATTCAACCGGGGTCCAAGCCGCAGCTCTTGAGCTA 240 Query 279 GACGTTTCATCAGACGCAGCCACCATTCAAAAAGCGGTCAGGGAAGCTTGGGACATCTTT 338 |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 241 GACGTTTCATCAGATGCAGCCACCATTCAAAAAGCGATAAGGGAAGCTTGGGACATCTTT 300 Query 339 GGAAAGATCGATGCATTGATCAACAATGCTGGAATCAGAGGCAATGTCAAGTCGAGTTTG 398 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 301 GGAAAGATCGATGCGTTGATCAACAATGCCGGAATCAGAGGCAATGTCAAGTCGAGTTTG 360 Query 399 GATTTGTCAGAGGACGAATGGGACAACGTCTTCAAGACCAACTTAAAGGGTCCTTGGTTA 458 |||||||| ||||| |||||||||||||||||||| || ||||||| ||| ||||||||| Sbjct 361 GATTTGTCGGAGGATGAATGGGACAACGTCTTCAAAACTAACTTAACGGGACCTTGGTTA 420 Query 459 GTATCCAAACATGTTTGTATGTTAATGCGTGACGCTAAACGAGGTGGCTCGGTGATAAAC 518 ||||| ||| |||||||| | |||||||||||||||||| |||||||||||||||||||| Sbjct 421 GTATCTAAATATGTTTGTGTTTTAATGCGTGACGCTAAAAGAGGTGGCTCGGTGATAAAC 480 Query 519 ATCTCATCGATCGCCGGGATCCGGGGTATGTTGCCCGGTGGACTTGCTTATGCTTGTTCC 578 |||||||| || |||||| |||| ||||| ||||||||||||||||| |||||||||||| Sbjct 481 ATCTCATCAATTGCCGGGGTCCGCGGTATCTTGCCCGGTGGACTTGCATATGCTTGTTCC 540 Query 579 AAAGGCGGTGTTGACACCATGTCAAGGATGATGGCACTTGAGTTAGGTGTTCATAAGATC 638 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 541 AAAGGCGGTGTTGACACCATGTCAAGGATGATGGCAATTGAGTTAGGTGTTCACAAGATC 600 Query 639 AGAGTGAACTCGATCGCACCGGGGCTTTTCAAGTCAGAGATCACACAAGGTCTTATGCAA 698 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 601 AGAGTGAACTCGATTGCGCCAGGGCTTTTCAAGTCAGAGATCACACAAGGTCTTATGCAA 660 Query 699 AAGGAGTGGCTCAAGAATGTTACCGAGAGGACTGTGCCGTTAAAGGTGCAACAGACCGTT 758 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 661 AAGGAATGGCTCAAGAATGTGACCGAGAGGACTGTGCCGTTAAAGGTGCAACAGACCGTT 720 Query 759 GATCCAGGGCTTACTTCTCTGGTTCGCTATCTCATTCATGACTCTTCTCAATATATATCC 818 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 721 GATCCAGGGCTTACTTCTCTCGTTCGCTATCTCATTCATGACTCTTCTCAATATATATCC 780 Query 819 GGGAATACATACATTGTTGATTCCGGTGCTACATTGCCCGGTGTGCCTATCTTTTCATCT 878 ||||||||||||||||| ||||| || |||||||||||||||||||| || ||||||||| Sbjct 781 GGGAATACATACATTGTCGATTCTGGAGCTACATTGCCCGGTGTGCCCATTTTTTCATCT 840 Query 879 CTCTGAAAATCGAACCTTATAATATCTTATCTTGTGCAATAATAAGTGAATACATTTACT 938 |||||||| | ||||| ||| |||||||||||||||||||||||||| Sbjct 841 CTCTGAAAGTTGAACC---------CTT-----GTGCAATAATAAGTGAATACATTTACA 886 Query 939 CATTCTCTACTA 950 |||||||||||| Sbjct 887 CATTCTCTACTA 898 > Ahg907180 jgi|Araly1|907180|Al_scaffold_0002_261 Length=873 Score = 939 bits (508), Expect = 0.0 Identities = 729/835 (87%), Gaps = 17/835 (2%) Strand=Plus/Plus Query 60 CAGGTGTTGAAGCTATTGGAGCCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACA 119 |||||||||| || |||||||||||||||||| ||||| | |||||||||||||||||| Sbjct 46 CAGGTGTTGAGGCAATTGGAGCCATGGTGTGAGCTTAATGGTAAAGTGGTTCTTGTGACA 105 Query 120 GGAGCTTCCTCTGGTATTGGAAGAGAGATCTGTCTTGATCTTGCCAAAGCTGGTTGCCAG 179 ||||||||||||||||| || |||||||||||| ||||||||| |||||||||||| || Sbjct 106 GGAGCTTCCTCTGGTATAGGGAGAGAGATCTGTATTGATCTTGGCAAAGCTGGTTGTAAG 165 Query 180 GTTATTGCAGCAGCTCGTCGTGTTGATCGACTCAACTCTCTCTGCTCTGAAATCAACAGC 239 |||||||||| ||||||||||||||||| ||| | |||||||| | ||||||||||||| Sbjct 166 ATTATTGCAGCGGCTCGTCGTGTTGATCGTCTCGATTCTCTCTGTTTTGAAATCAACAGC 225 Query 240 TTCAGTTCAACTGGAATCCAAGCCGCAGCTCTTGAGTTAGACGTTTCATCAGACGCAGCC 299 || ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| | Sbjct 226 TTTGGTTTAACTGGAATTCAAGCCGCAGCTCTTGAGTTAGATGTTTCATCAGACGCAGAC 285 Query 300 ACCATTCAAAAAGCGGTCAGGGAAGCTTGGGACATCTTTGGAAAGATCGATGCATTGATC 359 || |||| ||||| ||| | ||||||||||| |||||||||||||| |||| ||||| Sbjct 286 ACTATTCGAAAAGTGGTTAAAGAAGCTTGGGAAATCTTTGGAAAGATAGATGTTTTGATT 345 Query 360 AACAATGCTGGAATCAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAGAGGACGAATGG 419 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 346 AACAATGCTGGAATCAGAGGCAATGTCAAGTCGAGTTTGGATTTGTCAGAAGAAGAATGG 405 Query 420 GACAACGTCTTCAAGA-CCAACTTAAAGGG-TCCTTGGTTAGTATCCAAACAT-GTTTGT 476 || || ||||| | || ||||||||| || || |||||||||||| ||| | || || Sbjct 406 GATAAAGTCTTTA-GAACCAACTTAACTGGATC-TTGGTTAGTATCTAAAT-TCGTCGGT 462 Query 477 ATGTTAATGCGTGACGCTAAACGAGGTGGCTCGGTGATAAACATCTCATCGATCGCCGGG 536 | || ||||||||||||||||| ||||||||||||||||||||||| |||||| | ||| Sbjct 463 GTTTTGATGCGTGACGCTAAACGTGGTGGCTCGGTGATAAACATCTCGTCGATCTCTGGG 522 Query 537 AT-C-CGG-GGTATGTTGCCCGGTGGACTTGCTTATGCTTGTTCCAAAGGCGGTGTTGAC 593 | | | | ||| | ||| ||| | ||||| ||||||||||||||||||||||||||| Sbjct 523 CTTCACCGTGGTTTACGGCCAGGTTGTCTTGCGTATGCTTGTTCCAAAGGCGGTGTTGAC 582 Query 594 ACCATGTCAAGGATGATGGC-ACTTGAGTTAGGTGTTCATAAGATCAGAGTGAACTCGAT 652 |||||| | ||||||||||| | |||||||||||||| |||||||||||||||||||||| Sbjct 583 ACCATGACGAGGATGATGGCTA-TTGAGTTAGGTGTTTATAAGATCAGAGTGAACTCGAT 641 Query 653 CGCACCGGGGCTTTTCAAGTCAGAGATCACACAAGGTCTTATGCA-AAAGGAGTGGCTCA 711 ||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||| Sbjct 642 CGCACCGGGGCTTTTCAGGTCAGAGATCACACAAGGTCTTATGCAGAAAGAA-TGGCTCA 700 Query 712 AGAATGTTACCGAGAGGA-CTGTGCCGTTAAAGGTGCAACAGACCGTTGATCCAGGGCTT 770 |||| ||||| || | || |||| ||||||||| |||||||||| || |||||||||||| Sbjct 701 AGAAAGTTACGGA-ACGAACTGTACCGTTAAAGATGCAACAGACTGTGGATCCAGGGCTT 759 Query 771 ACTTCTCTGGTTCGCTATCTCATTCATGACTCTTCTCAATATAT-ATCCGGGAATACATA 829 || ||||| || || |||||||||||||| |||||||||||| | | | |||||||| || Sbjct 760 ACATCTCTCGTGCGTTATCTCATTCATGATTCTTCTCAATATGTCA-CTGGGAATACTTA 818 Query 830 CATTGTTGATTCCGGTGCTACATTGCCCGGTGTGCCTATCTTTTCATCTCTCTGA 884 |||||| ||||| || |||||||||||||||||||| |||||||| ||||||||| Sbjct 819 CATTGTCGATTCTGGAGCTACATTGCCCGGTGTGCCCATCTTTTCTTCTCTCTGA 873 > Ahg480684 jgi|Araly1|480684|fgenesh2_kg.3__3385__AT2G17845.1 Length=837 Score = 307 bits (166), Expect = 9e-83 Identities = 214/237 (90%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 81 CCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATTGGA 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 91 CCATGGTGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGA 150 Query 141 AGAGAGATCTGTCTTGATCTTGCCAAAGCTGGTTGCCAGGTTATTGCAGCAGCTCGTCGT 200 |||||| | ||||||||||| ||||||||||| || || |||| |||| |||||||||| Sbjct 151 AGAGAGGTATGTCTTGATCTAGCCAAAGCTGGCTGTAAGATTATCGCAGAAGCTCGTCGT 210 Query 201 GTTGATCGACTCAACTCTCTCTGCTCTGAAATCAACAGCTTC-AGT-T-CAACTGGAATC 257 || ||||| ||||| ||||||||||||||||| || |||||| | | | |||| ||| || Sbjct 211 GTCGATCGTCTCAAATCTCTCTGCTCTGAAATAAATAGCTTCGAATATTCAACCGGACTC 270 Query 258 CAAGCCGCAGCTCTTGAGTTAGACGTTTCATCAGACGCAGCCACCATTCAAAAAGCG 314 |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 271 CAAGCCGCAGCTCTTGAGCTAGACGTTTCATCAGACGCACCCACCATTCAAAAAGCG 327 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35301821142 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5