BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55340.1
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485957 jgi|Araly1|485957|fgenesh2_kg.5__1949__AT3G55340.1 2712 0.0
Ahg339541 jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640 233 3e-60
> Ahg485957 jgi|Araly1|485957|fgenesh2_kg.5__1949__AT3G55340.1
Length=1939
Score = 2712 bits (1468), Expect = 0.0
Identities = 1718/1837 (94%), Gaps = 24/1837 (1%)
Strand=Plus/Plus
Query 1 GTTTTTGGCGGTCTCAGTGAAGAAGATGGTGCTGTCGAACAAGAAGCTGAAGCAGAGGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTTTGGCGGTCTCAGTGAAGAAGATGGTGCTGTCGAACAAGAAGCTGAAGCAGAGGAT 60
Query 61 TCGACAAGATTTGGCTGAATCACTATCTGTCTCTGTATCCGAAACAAATCCACAATCTCA 120
|||||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 61 TCGACAAGATTTGGTTAAATCACTATCTGTCTCTGTAGCCGAAACCAATCCACAATCTCA 120
Query 121 GTCTCTGAAATTGCTCCTTGATTCATCTAGCCACAAACCCAGATTGTcgaagagagagaa 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GTCTCTGAAATTGCTCCTTGATTCATCTAGCCACAAACCCAGATTGTCCAAGAGAGAGAA 180
Query 181 acgaagaaattgcgaaactttcgctagagaagacgacgaaatcagagagaaTGAAGTTGG 240
||||||||||| ||||||||||||| |||||||||||| | ||| |||||||||||||||
Sbjct 181 ACGAAGAAATTCCGAAACTTTCGCTGGAGAAGACGACGGAGTCACAGAGAATGAAGTTGG 240
Query 241 GAATGGTGGGTCAAGC-GAGAAGACTGATACGAAGATTAAAAAGAAGAGAAAGAGAGACG 299
|| ||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 241 GATTGGTGGGTCAA-CGGAGAAAACTGATACGAAGATTATAAAGAAGAGAAAGAGAGACG 299
Query 300 ATGCTGTGGAAGTCGACGAGTTagaaggagatgaaggaactaaggaagagcaaaaacccc 359
|| ||||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 300 ATACTGTGGAGGTCGACGAATTAGAAGGAGATGAAGTAACTAAGGAAGAGGAAAAACCCC 359
Query 360 agaagaag--aaa-aataagaagaagaagaagaagagaaagGTAAACAAAACGCCAAAGA 416
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGGTAAACAAAACGCCAAAGA 419
Query 417 AGGCTGAGGAAGGCAATGTAGAAGAGAAGGTGAAGGTAGAAGAGATTGAAG-T--TAATA 473
||||||||||||| ||||||||||||||||| ||||||||||||||| ||| | |||||
Sbjct 420 AGGCTGAGGAAGGAAATGTAGAAGAGAAGGTTAAGGTAGAAGAGATTCAAGTTAATAATA 479
Query 474 CAGACAATAAAGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTT 533
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 CAGACAATAAAGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTGGGGGTATTCCTT 539
Query 534 ATCAGAGTACAGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAG 593
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 540 ATCAGAGTACAGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAAG 599
Query 594 TTGATTGCAAGATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTG 653
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 600 TTGATTGCAAGATGCGTCCTGAGGATGGTGCTTTCAGTGGTATTGCCTTCATCACTTTTG 659
Query 654 ACACTGAAGATGGCGCAAAACGTGCTTTGGCTTTTGATAGAGCTGCTATGGGTGATCGAT 713
| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 660 AAACTGAAGAAGGTGCAAAACGTGCTTTGGCTTTTGATAGAGCTGCAATGGGTGATCGAT 719
Query 714 ATTTGACAATCCAGCAATACGTGAAAACCACCACCCCTTCCATTCCAAGAAGGAAAACAT 773
|||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 720 TTTTGACGATCCAGCAATATGTGAAAACCACCACCCCTTCCCTTCCCAGAAGGAAAACAT 779
Query 774 CTTCTGGTTTCGCTCCAGAAATGGTGGATGGCTATAACAGGGTATACATTGGGAATTTAG 833
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTCTGGCTTCGCTCCAGAAATGGTGGATGGCTATAACAGGGTATACATTGGGAATTTAG 839
Query 834 CCTGGGACACAACAGAGCGTGACATACGGAAGCTCTTCTCTGACTGCGTAATAAACTCTG 893
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 840 CCTGGGACACAACAGAGCGTGACATACGGAAACTCTTCTCTGACTGCGTAATTAACTCTG 899
Query 894 TGCGGTTGGGTAAAAACAAAGAAACAGGAGAGTTTAAAGGGTATGCGCATGTGGATTTCA 953
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 900 TGCGGTTGGGCAAAAACAAAGAAACAGGGGAGTTTAAAGGGTACGCGCATGTGGATTTCA 959
Query 954 AGGATAGTGTGTCTGTGGCGATTGCGCTGAAGCTGGATCAGCAGGTTATTTGCGGAAGAC 1013
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 AGGATAGCGTGTCTGTGGCGATCGCGCTGAAGCTGGATCAGCAGGTTATTTGCGGAAGAC 1019
Query 1014 CTGTCAAGATATGTTGTGCACTTAAAGACAGACCAGCTACTGATCATACACCTGGTGAAA 1073
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1020 CTGTCAAGATATGTTGTGCACTTAAAGACAGACCAGCTACAGATCATACACCTGGTGAAA 1079
Query 1074 CGAACAATGCTGGTTCGTACAACATGGAAGATACTTATGCTGCTGCTGATCCAGTACCGG 1133
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1080 CGAACAATGTTGGTTCGTACAACATCGAAGAGACTTATGCTGCTGCTGATCCAATACCGG 1139
Query 1134 CTTTAGCTGGG-CGTAGCGAAGTTGATGACGGAAACTACTTTGCAACTACGGTTAGCAGC 1192
||||||||||| | || ||||||| |||| |||||||||||| |||| || |||||||||
Sbjct 1140 CTTTAGCTGGGGC-TAACGAAGTTAATGATGGAAACTACTTTACAACCACAGTTAGCAGC 1198
Query 1193 AGTAAGGTCAAAAGGAGGGTCTGTTAT-GAGTGTGGAGAAAAGGGTCATCTTTCTACAGC 1251
||||| ||||||||||| ||||| | |||||||| ||||||||||||||||||| |
Sbjct 1199 GGTAAGATCAAAAGGAGGAACTGTT-TCGAGTGTGGCGAAAAGGGTCATCTTTCTA-ATA 1256
Query 1252 CT-GTCCCATAAAGCTTCAAAAGGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGA 1310
|| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTTGTCCCAAAAAGCTTCAAAATGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGA 1316
Query 1311 CTGTTGATGGTAGACCGGCTATGCAAAGCTATGGTCTTCCAAAGAATAGTGGTGATTCTT 1370
|||| |||| | ||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1317 CTGTCGATGCTGGACCGGCTATGCAAAGCTATGCTCTTCAAAAGAATATTGGTGATTCTT 1376
Query 1371 ACTACATGAATGAGACATACGCTTCTACAAATGAAACTTATAATGGAGGATACTCAGCAT 1430
||||||||||||||||||||||| |||||||||||||| || ||||||| | | |||||
Sbjct 1377 ACTACATGAATGAGACATACGCTGCTACAAATGAAACTAATGATGGAGGCT--T-AGCAT 1433
Query 1431 CTGCTGTTGGCACT---GGTAAGGTCAAAAGGAGGAACTGTTATGAGTGTGGAGAAAAGG 1487
| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1434 CCGCTGTTAGCACTACTGGTAAGGTCAAAAGGAGGAACTGTTACGAGTGTGGAGAAAAGG 1493
Query 1488 GTCATCTTTCTACAGCCTGTCCCATAAAGCTTCAAAACACTTCTCACACAAACTCA-ACG 1546
||||||||||||| || ||||||| |||||||||||||||| ||||||||||||| | |
Sbjct 1494 GTCATCTTTCTACTGCTTGTCCCAAAAAGCTTCAAAACACTGCTCACACAAACTCCCA-G 1552
Query 1547 CTGGATCACCAAACTGTTGAGGCAGGACCGACTCAGGTAACAAGCTATAGTCTTCAAAAG 1606
||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1553 CTGGAACACCAGACTGTTGAGGCAGGACCGATTCAGGTAACAAGCTATAGTCTTCAAAAG 1612
Query 1607 AAAACAAGAGACACTGAAAACAATGGTGGTTCGTTCATGGATGAGAGC-TATGCTACTGT 1665
|||||||||||| |||| |||||||||||||| ||||||||||||| | |||||||||||
Sbjct 1613 AAAACAAGAGACTCTGAGAACAATGGTGGTTCTTTCATGGATGAGA-CATATGCTACTGT 1671
Query 1666 TCCGATATCCATTGATGTGACAAATGGAGCTAATGATGCAAGCTTAACATCTGCGGTTAG 1725
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1672 TCCGATATCTGTTGATGTGACGAATGGAGCTAATGATGCAAGCTTAACATCTGCAGTTAG 1731
Query 1726 CACTGGTAAGATCAAAAAGAGAAACTGTTACGAGTGCGGAGAAAAAGGTCATCTTTCTTC 1785
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1732 CACTGGTAAGATCAAAAAGAGAAACTGTTACGAGTGTGGAGAAAAAGGTCATCTTTCTTC 1791
Query 1786 AGCTTGCCCTAACAAGCTGCAAAAACAAGGCTGATGA 1822
|||||||||||| |||| |||||||||||||||||||
Sbjct 1792 AGCTTGCCCTAAGAAGCCGCAAAAACAAGGCTGATGA 1828
Score = 130 bits (70), Expect = 4e-29
Identities = 136/167 (81%), Gaps = 8/167 (5%)
Strand=Plus/Plus
Query 1194 GTAAGGTCAAAAGGAGGGTCTGTTATGAGTGTGGAGAAAAGGGTCATCTTTCTACAGCCT 1253
||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
Sbjct 1452 GTAAGGTCAAAAGGAGGAACTGTTACGAGTGTGGAGAAAAGGGTCATCTTTCTACTGCTT 1511
Query 1254 GTCCCATAAAGCTTCAAAAGGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGACTG 1313
|||||| |||||||||||| ||| | | || ||||||| |||||| || ||||||
Sbjct 1512 GTCCCAAAAAGCTTCAAAACACTGCTCA-CA--CAAACTCCCAGCTGGAACACCAGACTG 1568
Query 1314 TTGATGGTAG-ACCGGCT-ATGCAA-A-GCTATGGTCTTCCAAAGAA 1356
|||| || || |||| | | | || | ||||| |||||| ||||||
Sbjct 1569 TTGA-GGCAGGACCGATTCAGGTAACAAGCTATAGTCTTCAAAAGAA 1614
> Ahg339541 jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640
Length=1017
Score = 233 bits (126), Expect = 3e-60
Identities = 157/171 (92%), Gaps = 6/171 (4%)
Strand=Plus/Plus
Query 484 AGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTTATCAGAGTAC 543
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 555 AGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTAGGGGTATTCCTTATCAGAGTAC 614
Query 544 AGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAGTTGATTGCAA 603
|||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||
Sbjct 615 AGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAATTTGACTGCAA 674
Query 604 GATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTGA 654
|||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 675 GATGCGTCCTGAGGATGGTGCTTTCAGTG------CCTTCATCACTTTTGA 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76942294900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5