BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55340.1

Length=2046
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485957 jgi|Araly1|485957|fgenesh2_kg.5__1949__AT3G55340.1        2712    0.0  
  Ahg339541 jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640           233    3e-60


> Ahg485957 jgi|Araly1|485957|fgenesh2_kg.5__1949__AT3G55340.1
Length=1939

 Score = 2712 bits (1468),  Expect = 0.0
 Identities = 1718/1837 (94%), Gaps = 24/1837 (1%)
 Strand=Plus/Plus

Query  1     GTTTTTGGCGGTCTCAGTGAAGAAGATGGTGCTGTCGAACAAGAAGCTGAAGCAGAGGAT  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     GTTTTTGGCGGTCTCAGTGAAGAAGATGGTGCTGTCGAACAAGAAGCTGAAGCAGAGGAT  60

Query  61    TCGACAAGATTTGGCTGAATCACTATCTGTCTCTGTATCCGAAACAAATCCACAATCTCA  120
             |||||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct  61    TCGACAAGATTTGGTTAAATCACTATCTGTCTCTGTAGCCGAAACCAATCCACAATCTCA  120

Query  121   GTCTCTGAAATTGCTCCTTGATTCATCTAGCCACAAACCCAGATTGTcgaagagagagaa  180
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  121   GTCTCTGAAATTGCTCCTTGATTCATCTAGCCACAAACCCAGATTGTCCAAGAGAGAGAA  180

Query  181   acgaagaaattgcgaaactttcgctagagaagacgacgaaatcagagagaaTGAAGTTGG  240
             ||||||||||| ||||||||||||| |||||||||||| | ||| |||||||||||||||
Sbjct  181   ACGAAGAAATTCCGAAACTTTCGCTGGAGAAGACGACGGAGTCACAGAGAATGAAGTTGG  240

Query  241   GAATGGTGGGTCAAGC-GAGAAGACTGATACGAAGATTAAAAAGAAGAGAAAGAGAGACG  299
             || ||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct  241   GATTGGTGGGTCAA-CGGAGAAAACTGATACGAAGATTATAAAGAAGAGAAAGAGAGACG  299

Query  300   ATGCTGTGGAAGTCGACGAGTTagaaggagatgaaggaactaaggaagagcaaaaacccc  359
             || ||||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct  300   ATACTGTGGAGGTCGACGAATTAGAAGGAGATGAAGTAACTAAGGAAGAGGAAAAACCCC  359

Query  360   agaagaag--aaa-aataagaagaagaagaagaagagaaagGTAAACAAAACGCCAAAGA  416
             ||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  360   AGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGGTAAACAAAACGCCAAAGA  419

Query  417   AGGCTGAGGAAGGCAATGTAGAAGAGAAGGTGAAGGTAGAAGAGATTGAAG-T--TAATA  473
             ||||||||||||| ||||||||||||||||| ||||||||||||||| ||| |  |||||
Sbjct  420   AGGCTGAGGAAGGAAATGTAGAAGAGAAGGTTAAGGTAGAAGAGATTCAAGTTAATAATA  479

Query  474   CAGACAATAAAGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTT  533
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  480   CAGACAATAAAGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTGGGGGTATTCCTT  539

Query  534   ATCAGAGTACAGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAG  593
             |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct  540   ATCAGAGTACAGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAAG  599

Query  594   TTGATTGCAAGATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTG  653
             |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  600   TTGATTGCAAGATGCGTCCTGAGGATGGTGCTTTCAGTGGTATTGCCTTCATCACTTTTG  659

Query  654   ACACTGAAGATGGCGCAAAACGTGCTTTGGCTTTTGATAGAGCTGCTATGGGTGATCGAT  713
             | |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  660   AAACTGAAGAAGGTGCAAAACGTGCTTTGGCTTTTGATAGAGCTGCAATGGGTGATCGAT  719

Query  714   ATTTGACAATCCAGCAATACGTGAAAACCACCACCCCTTCCATTCCAAGAAGGAAAACAT  773
              |||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct  720   TTTTGACGATCCAGCAATATGTGAAAACCACCACCCCTTCCCTTCCCAGAAGGAAAACAT  779

Query  774   CTTCTGGTTTCGCTCCAGAAATGGTGGATGGCTATAACAGGGTATACATTGGGAATTTAG  833
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  780   CTTCTGGCTTCGCTCCAGAAATGGTGGATGGCTATAACAGGGTATACATTGGGAATTTAG  839

Query  834   CCTGGGACACAACAGAGCGTGACATACGGAAGCTCTTCTCTGACTGCGTAATAAACTCTG  893
             ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct  840   CCTGGGACACAACAGAGCGTGACATACGGAAACTCTTCTCTGACTGCGTAATTAACTCTG  899

Query  894   TGCGGTTGGGTAAAAACAAAGAAACAGGAGAGTTTAAAGGGTATGCGCATGTGGATTTCA  953
             |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  900   TGCGGTTGGGCAAAAACAAAGAAACAGGGGAGTTTAAAGGGTACGCGCATGTGGATTTCA  959

Query  954   AGGATAGTGTGTCTGTGGCGATTGCGCTGAAGCTGGATCAGCAGGTTATTTGCGGAAGAC  1013
             ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  960   AGGATAGCGTGTCTGTGGCGATCGCGCTGAAGCTGGATCAGCAGGTTATTTGCGGAAGAC  1019

Query  1014  CTGTCAAGATATGTTGTGCACTTAAAGACAGACCAGCTACTGATCATACACCTGGTGAAA  1073
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1020  CTGTCAAGATATGTTGTGCACTTAAAGACAGACCAGCTACAGATCATACACCTGGTGAAA  1079

Query  1074  CGAACAATGCTGGTTCGTACAACATGGAAGATACTTATGCTGCTGCTGATCCAGTACCGG  1133
             ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct  1080  CGAACAATGTTGGTTCGTACAACATCGAAGAGACTTATGCTGCTGCTGATCCAATACCGG  1139

Query  1134  CTTTAGCTGGG-CGTAGCGAAGTTGATGACGGAAACTACTTTGCAACTACGGTTAGCAGC  1192
             ||||||||||| | || ||||||| |||| |||||||||||| |||| || |||||||||
Sbjct  1140  CTTTAGCTGGGGC-TAACGAAGTTAATGATGGAAACTACTTTACAACCACAGTTAGCAGC  1198

Query  1193  AGTAAGGTCAAAAGGAGGGTCTGTTAT-GAGTGTGGAGAAAAGGGTCATCTTTCTACAGC  1251
              ||||| |||||||||||  ||||| | |||||||| ||||||||||||||||||| |  
Sbjct  1199  GGTAAGATCAAAAGGAGGAACTGTT-TCGAGTGTGGCGAAAAGGGTCATCTTTCTA-ATA  1256

Query  1252  CT-GTCCCATAAAGCTTCAAAAGGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGA  1310
             || |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1257  CTTGTCCCAAAAAGCTTCAAAATGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGA  1316

Query  1311  CTGTTGATGGTAGACCGGCTATGCAAAGCTATGGTCTTCCAAAGAATAGTGGTGATTCTT  1370
             |||| |||| | ||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct  1317  CTGTCGATGCTGGACCGGCTATGCAAAGCTATGCTCTTCAAAAGAATATTGGTGATTCTT  1376

Query  1371  ACTACATGAATGAGACATACGCTTCTACAAATGAAACTTATAATGGAGGATACTCAGCAT  1430
             ||||||||||||||||||||||| |||||||||||||| || ||||||| |  | |||||
Sbjct  1377  ACTACATGAATGAGACATACGCTGCTACAAATGAAACTAATGATGGAGGCT--T-AGCAT  1433

Query  1431  CTGCTGTTGGCACT---GGTAAGGTCAAAAGGAGGAACTGTTATGAGTGTGGAGAAAAGG  1487
             | |||||| |||||   |||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1434  CCGCTGTTAGCACTACTGGTAAGGTCAAAAGGAGGAACTGTTACGAGTGTGGAGAAAAGG  1493

Query  1488  GTCATCTTTCTACAGCCTGTCCCATAAAGCTTCAAAACACTTCTCACACAAACTCA-ACG  1546
             ||||||||||||| || ||||||| |||||||||||||||| |||||||||||||  | |
Sbjct  1494  GTCATCTTTCTACTGCTTGTCCCAAAAAGCTTCAAAACACTGCTCACACAAACTCCCA-G  1552

Query  1547  CTGGATCACCAAACTGTTGAGGCAGGACCGACTCAGGTAACAAGCTATAGTCTTCAAAAG  1606
             ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1553  CTGGAACACCAGACTGTTGAGGCAGGACCGATTCAGGTAACAAGCTATAGTCTTCAAAAG  1612

Query  1607  AAAACAAGAGACACTGAAAACAATGGTGGTTCGTTCATGGATGAGAGC-TATGCTACTGT  1665
             |||||||||||| |||| |||||||||||||| ||||||||||||| | |||||||||||
Sbjct  1613  AAAACAAGAGACTCTGAGAACAATGGTGGTTCTTTCATGGATGAGA-CATATGCTACTGT  1671

Query  1666  TCCGATATCCATTGATGTGACAAATGGAGCTAATGATGCAAGCTTAACATCTGCGGTTAG  1725
             |||||||||  |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  1672  TCCGATATCTGTTGATGTGACGAATGGAGCTAATGATGCAAGCTTAACATCTGCAGTTAG  1731

Query  1726  CACTGGTAAGATCAAAAAGAGAAACTGTTACGAGTGCGGAGAAAAAGGTCATCTTTCTTC  1785
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1732  CACTGGTAAGATCAAAAAGAGAAACTGTTACGAGTGTGGAGAAAAAGGTCATCTTTCTTC  1791

Query  1786  AGCTTGCCCTAACAAGCTGCAAAAACAAGGCTGATGA  1822
             |||||||||||| |||| |||||||||||||||||||
Sbjct  1792  AGCTTGCCCTAAGAAGCCGCAAAAACAAGGCTGATGA  1828


 Score =  130 bits (70),  Expect = 4e-29
 Identities = 136/167 (81%), Gaps = 8/167 (5%)
 Strand=Plus/Plus

Query  1194  GTAAGGTCAAAAGGAGGGTCTGTTATGAGTGTGGAGAAAAGGGTCATCTTTCTACAGCCT  1253
             |||||||||||||||||  |||||| ||||||||||||||||||||||||||||| || |
Sbjct  1452  GTAAGGTCAAAAGGAGGAACTGTTACGAGTGTGGAGAAAAGGGTCATCTTTCTACTGCTT  1511

Query  1254  GTCCCATAAAGCTTCAAAAGGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGACTG  1313
             |||||| ||||||||||||  ||| | | ||  |||||||  ||||||  ||  ||||||
Sbjct  1512  GTCCCAAAAAGCTTCAAAACACTGCTCA-CA--CAAACTCCCAGCTGGAACACCAGACTG  1568

Query  1314  TTGATGGTAG-ACCGGCT-ATGCAA-A-GCTATGGTCTTCCAAAGAA  1356
             |||| || || ||||  | | | || | ||||| |||||| ||||||
Sbjct  1569  TTGA-GGCAGGACCGATTCAGGTAACAAGCTATAGTCTTCAAAAGAA  1614


> Ahg339541 jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640
Length=1017

 Score =  233 bits (126),  Expect = 3e-60
 Identities = 157/171 (92%), Gaps = 6/171 (4%)
 Strand=Plus/Plus

Query  484  AGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTTATCAGAGTAC  543
            |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct  555  AGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTAGGGGTATTCCTTATCAGAGTAC  614

Query  544  AGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAGTTGATTGCAA  603
            |||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||
Sbjct  615  AGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAATTTGACTGCAA  674

Query  604  GATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTGA  654
            |||||||||||| ||||| ||||||||||      ||||||||||||||||
Sbjct  675  GATGCGTCCTGAGGATGGTGCTTTCAGTG------CCTTCATCACTTTTGA  719



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 76942294900


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5