BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55340.1 Length=2046 Score E Sequences producing significant alignments: (Bits) Value Ahg485957 jgi|Araly1|485957|fgenesh2_kg.5__1949__AT3G55340.1 2712 0.0 Ahg339541 jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640 233 3e-60 > Ahg485957 jgi|Araly1|485957|fgenesh2_kg.5__1949__AT3G55340.1 Length=1939 Score = 2712 bits (1468), Expect = 0.0 Identities = 1718/1837 (94%), Gaps = 24/1837 (1%) Strand=Plus/Plus Query 1 GTTTTTGGCGGTCTCAGTGAAGAAGATGGTGCTGTCGAACAAGAAGCTGAAGCAGAGGAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTTTTTGGCGGTCTCAGTGAAGAAGATGGTGCTGTCGAACAAGAAGCTGAAGCAGAGGAT 60 Query 61 TCGACAAGATTTGGCTGAATCACTATCTGTCTCTGTATCCGAAACAAATCCACAATCTCA 120 |||||||||||||| | |||||||||||||||||||| ||||||| |||||||||||||| Sbjct 61 TCGACAAGATTTGGTTAAATCACTATCTGTCTCTGTAGCCGAAACCAATCCACAATCTCA 120 Query 121 GTCTCTGAAATTGCTCCTTGATTCATCTAGCCACAAACCCAGATTGTcgaagagagagaa 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 GTCTCTGAAATTGCTCCTTGATTCATCTAGCCACAAACCCAGATTGTCCAAGAGAGAGAA 180 Query 181 acgaagaaattgcgaaactttcgctagagaagacgacgaaatcagagagaaTGAAGTTGG 240 ||||||||||| ||||||||||||| |||||||||||| | ||| ||||||||||||||| Sbjct 181 ACGAAGAAATTCCGAAACTTTCGCTGGAGAAGACGACGGAGTCACAGAGAATGAAGTTGG 240 Query 241 GAATGGTGGGTCAAGC-GAGAAGACTGATACGAAGATTAAAAAGAAGAGAAAGAGAGACG 299 || ||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||| Sbjct 241 GATTGGTGGGTCAA-CGGAGAAAACTGATACGAAGATTATAAAGAAGAGAAAGAGAGACG 299 Query 300 ATGCTGTGGAAGTCGACGAGTTagaaggagatgaaggaactaaggaagagcaaaaacccc 359 || ||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||| Sbjct 300 ATACTGTGGAGGTCGACGAATTAGAAGGAGATGAAGTAACTAAGGAAGAGGAAAAACCCC 359 Query 360 agaagaag--aaa-aataagaagaagaagaagaagagaaagGTAAACAAAACGCCAAAGA 416 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGGTAAACAAAACGCCAAAGA 419 Query 417 AGGCTGAGGAAGGCAATGTAGAAGAGAAGGTGAAGGTAGAAGAGATTGAAG-T--TAATA 473 ||||||||||||| ||||||||||||||||| ||||||||||||||| ||| | ||||| Sbjct 420 AGGCTGAGGAAGGAAATGTAGAAGAGAAGGTTAAGGTAGAAGAGATTCAAGTTAATAATA 479 Query 474 CAGACAATAAAGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTT 533 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 480 CAGACAATAAAGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTGGGGGTATTCCTT 539 Query 534 ATCAGAGTACAGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAG 593 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 540 ATCAGAGTACAGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAAG 599 Query 594 TTGATTGCAAGATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTG 653 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 600 TTGATTGCAAGATGCGTCCTGAGGATGGTGCTTTCAGTGGTATTGCCTTCATCACTTTTG 659 Query 654 ACACTGAAGATGGCGCAAAACGTGCTTTGGCTTTTGATAGAGCTGCTATGGGTGATCGAT 713 | |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 660 AAACTGAAGAAGGTGCAAAACGTGCTTTGGCTTTTGATAGAGCTGCAATGGGTGATCGAT 719 Query 714 ATTTGACAATCCAGCAATACGTGAAAACCACCACCCCTTCCATTCCAAGAAGGAAAACAT 773 |||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||| Sbjct 720 TTTTGACGATCCAGCAATATGTGAAAACCACCACCCCTTCCCTTCCCAGAAGGAAAACAT 779 Query 774 CTTCTGGTTTCGCTCCAGAAATGGTGGATGGCTATAACAGGGTATACATTGGGAATTTAG 833 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CTTCTGGCTTCGCTCCAGAAATGGTGGATGGCTATAACAGGGTATACATTGGGAATTTAG 839 Query 834 CCTGGGACACAACAGAGCGTGACATACGGAAGCTCTTCTCTGACTGCGTAATAAACTCTG 893 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 840 CCTGGGACACAACAGAGCGTGACATACGGAAACTCTTCTCTGACTGCGTAATTAACTCTG 899 Query 894 TGCGGTTGGGTAAAAACAAAGAAACAGGAGAGTTTAAAGGGTATGCGCATGTGGATTTCA 953 |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 900 TGCGGTTGGGCAAAAACAAAGAAACAGGGGAGTTTAAAGGGTACGCGCATGTGGATTTCA 959 Query 954 AGGATAGTGTGTCTGTGGCGATTGCGCTGAAGCTGGATCAGCAGGTTATTTGCGGAAGAC 1013 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 960 AGGATAGCGTGTCTGTGGCGATCGCGCTGAAGCTGGATCAGCAGGTTATTTGCGGAAGAC 1019 Query 1014 CTGTCAAGATATGTTGTGCACTTAAAGACAGACCAGCTACTGATCATACACCTGGTGAAA 1073 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1020 CTGTCAAGATATGTTGTGCACTTAAAGACAGACCAGCTACAGATCATACACCTGGTGAAA 1079 Query 1074 CGAACAATGCTGGTTCGTACAACATGGAAGATACTTATGCTGCTGCTGATCCAGTACCGG 1133 ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||| Sbjct 1080 CGAACAATGTTGGTTCGTACAACATCGAAGAGACTTATGCTGCTGCTGATCCAATACCGG 1139 Query 1134 CTTTAGCTGGG-CGTAGCGAAGTTGATGACGGAAACTACTTTGCAACTACGGTTAGCAGC 1192 ||||||||||| | || ||||||| |||| |||||||||||| |||| || ||||||||| Sbjct 1140 CTTTAGCTGGGGC-TAACGAAGTTAATGATGGAAACTACTTTACAACCACAGTTAGCAGC 1198 Query 1193 AGTAAGGTCAAAAGGAGGGTCTGTTAT-GAGTGTGGAGAAAAGGGTCATCTTTCTACAGC 1251 ||||| ||||||||||| ||||| | |||||||| ||||||||||||||||||| | Sbjct 1199 GGTAAGATCAAAAGGAGGAACTGTT-TCGAGTGTGGCGAAAAGGGTCATCTTTCTA-ATA 1256 Query 1252 CT-GTCCCATAAAGCTTCAAAAGGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGA 1310 || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1257 CTTGTCCCAAAAAGCTTCAAAATGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGA 1316 Query 1311 CTGTTGATGGTAGACCGGCTATGCAAAGCTATGGTCTTCCAAAGAATAGTGGTGATTCTT 1370 |||| |||| | ||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 1317 CTGTCGATGCTGGACCGGCTATGCAAAGCTATGCTCTTCAAAAGAATATTGGTGATTCTT 1376 Query 1371 ACTACATGAATGAGACATACGCTTCTACAAATGAAACTTATAATGGAGGATACTCAGCAT 1430 ||||||||||||||||||||||| |||||||||||||| || ||||||| | | ||||| Sbjct 1377 ACTACATGAATGAGACATACGCTGCTACAAATGAAACTAATGATGGAGGCT--T-AGCAT 1433 Query 1431 CTGCTGTTGGCACT---GGTAAGGTCAAAAGGAGGAACTGTTATGAGTGTGGAGAAAAGG 1487 | |||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1434 CCGCTGTTAGCACTACTGGTAAGGTCAAAAGGAGGAACTGTTACGAGTGTGGAGAAAAGG 1493 Query 1488 GTCATCTTTCTACAGCCTGTCCCATAAAGCTTCAAAACACTTCTCACACAAACTCA-ACG 1546 ||||||||||||| || ||||||| |||||||||||||||| ||||||||||||| | | Sbjct 1494 GTCATCTTTCTACTGCTTGTCCCAAAAAGCTTCAAAACACTGCTCACACAAACTCCCA-G 1552 Query 1547 CTGGATCACCAAACTGTTGAGGCAGGACCGACTCAGGTAACAAGCTATAGTCTTCAAAAG 1606 ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1553 CTGGAACACCAGACTGTTGAGGCAGGACCGATTCAGGTAACAAGCTATAGTCTTCAAAAG 1612 Query 1607 AAAACAAGAGACACTGAAAACAATGGTGGTTCGTTCATGGATGAGAGC-TATGCTACTGT 1665 |||||||||||| |||| |||||||||||||| ||||||||||||| | ||||||||||| Sbjct 1613 AAAACAAGAGACTCTGAGAACAATGGTGGTTCTTTCATGGATGAGA-CATATGCTACTGT 1671 Query 1666 TCCGATATCCATTGATGTGACAAATGGAGCTAATGATGCAAGCTTAACATCTGCGGTTAG 1725 ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1672 TCCGATATCTGTTGATGTGACGAATGGAGCTAATGATGCAAGCTTAACATCTGCAGTTAG 1731 Query 1726 CACTGGTAAGATCAAAAAGAGAAACTGTTACGAGTGCGGAGAAAAAGGTCATCTTTCTTC 1785 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1732 CACTGGTAAGATCAAAAAGAGAAACTGTTACGAGTGTGGAGAAAAAGGTCATCTTTCTTC 1791 Query 1786 AGCTTGCCCTAACAAGCTGCAAAAACAAGGCTGATGA 1822 |||||||||||| |||| ||||||||||||||||||| Sbjct 1792 AGCTTGCCCTAAGAAGCCGCAAAAACAAGGCTGATGA 1828 Score = 130 bits (70), Expect = 4e-29 Identities = 136/167 (81%), Gaps = 8/167 (5%) Strand=Plus/Plus Query 1194 GTAAGGTCAAAAGGAGGGTCTGTTATGAGTGTGGAGAAAAGGGTCATCTTTCTACAGCCT 1253 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || | Sbjct 1452 GTAAGGTCAAAAGGAGGAACTGTTACGAGTGTGGAGAAAAGGGTCATCTTTCTACTGCTT 1511 Query 1254 GTCCCATAAAGCTTCAAAAGGCTGATGATCAGGCAAACTCAAAGCTGGGTCAAGAGACTG 1313 |||||| |||||||||||| ||| | | || ||||||| |||||| || |||||| Sbjct 1512 GTCCCAAAAAGCTTCAAAACACTGCTCA-CA--CAAACTCCCAGCTGGAACACCAGACTG 1568 Query 1314 TTGATGGTAG-ACCGGCT-ATGCAA-A-GCTATGGTCTTCCAAAGAA 1356 |||| || || |||| | | | || | ||||| |||||| |||||| Sbjct 1569 TTGA-GGCAGGACCGATTCAGGTAACAAGCTATAGTCTTCAAAAGAA 1614 > Ahg339541 jgi|Araly1|339541|fgenesh1_pg.C_scaffold_2001640 Length=1017 Score = 233 bits (126), Expect = 3e-60 Identities = 157/171 (92%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 484 AGAAGAAGATGGGGTTGTTCCTAACAAGTTATATGTTGGGGGTATTCCTTATCAGAGTAC 543 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 555 AGAAGAAGATGGGGTTGTTCCTAAAAAGTTATATGTTAGGGGTATTCCTTATCAGAGTAC 614 Query 544 AGAAGATGAGATTCGTAGCTACTTTAGAAGCTGTGGAGTCATCATTAAAGTTGATTGCAA 603 |||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||| Sbjct 615 AGAAGATGAGATTCGTAGCTACTTCAGAAGCTGTGGAGTCATCACTAAATTTGACTGCAA 674 Query 604 GATGCGTCCTGAAGATGGGGCTTTCAGTGGTATTGCCTTCATCACTTTTGA 654 |||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct 675 GATGCGTCCTGAGGATGGTGCTTTCAGTG------CCTTCATCACTTTTGA 719 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76942294900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5