BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55360.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938467 jgi|Araly1|938467|scaffold_502658.1 1655 0.0
> Ahg938467 jgi|Araly1|938467|scaffold_502658.1
Length=1007
Score = 1655 bits (896), Expect = 0.0
Identities = 968/1004 (96%), Gaps = 0/1004 (0%)
Strand=Plus/Plus
Query 107 tctctctcaatttcctcatctGGGTCTTCCTCGTTTGCTCCGCTTAAGCACCATGAAGGT 166
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 3 TCTCTCTCAATTTCCTCATCTGGGTCTTCCTCGTTTTCTCCGCTTTAGCACCATGAAGGT 62
Query 167 CACCGTCGTCTCCCGCAGCGGCAGAGAAGTCCTCAAAGCTCCCCTTGACCTCCCCGATTC 226
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 63 CACCGTCGTCTCCCGCAGCGGCAGAGAAGTCCTCAAAGCTCCCCTCGATCTCCCCGATTC 122
Query 227 GGCGACTGTTGCTGATCTGCAAGAAGCGTTTCATAAGAGAGCTAAGAAGTTTTACCCGTC 286
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 123 GGCAACTGTTGCTGATCTGCAAGAAGCGTTTCATAAGAGAGCTAAAAAGTTTTACCCATC 182
Query 287 GAGGCAAAGACTGACTCTTCCCGTGACTCCTGGATCGAAGGACAAACCTGTTGTCCTCAA 346
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 183 GAGGCAAAGACTGACTCTTCCCGTGGCTCCTGGATCGAAGGAGAAACCTGTTGTCCTCAA 242
Query 347 TAGCAAGAAATCACTGAAGGAGTACTGTGATGGAAACAACAACTCCTTAACTGTAGTCTT 406
||||||||||||||| || |||||||||| |||||||| |||||||||||||||||||||
Sbjct 243 TAGCAAGAAATCACTCAAAGAGTACTGTGGTGGAAACACCAACTCCTTAACTGTAGTCTT 302
Query 407 CAAAGACCTGGGGGCACAAGTTTCCTACCGCACACTCTTCTTCTTCGAGTATCTTGGCCC 466
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 CAAAGACTTGGGGGCACAAGTTTCCTACCGCACGCTCTTCTTCTTCGAGTATCTTGGCCC 362
Query 467 TCTCCTTATCTACCCTGTCTTTTACTACTTCCCTGTTTACAAGTTTCTTGGTTATGGAGA 526
||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 363 TCTCCTTATCTACCCGGTCTTTTACTACTTCCCTGTTTACAAATTCCTTGGCTATGGAGA 422
Query 527 GGACTGTGTGATCCATCCGGTCCAGACGTACGCTATGTACTACTGGTGCTTTCACTACTT 586
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGACCGTGTGATCCATCCGGTCCAGACGTACGCTATGTACTACTGGTGCTTTCACTACTT 482
Query 587 CAAACGGATCTTAGAAACGTTTTTCGTACATCGGTTCAGCCACGCAACCTCCCCAATCGG 646
|||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 483 CAAACGAATCCTAGAAACATTTTTCGTTCATCGGTTCAGCCACGCAACCTCCCCAATCGC 542
Query 647 GAATGTGTTCAGGAACTGTGCTTATTACTGGAGCTTTGGTGCTTACATTGCTTATTACGT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GAATGTGTTCAGGAACTGTGCTTATTACTGGAGCTTTGGTGCTTACATTGCTTATTACGT 602
Query 707 CAACCATCCCTTGTACACTCCAGTTAGTGACCTTCAGATGAAGATTGGTTTCGGGTTTGG 766
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 603 CAACCATCCCTTGTACACTCCAGTCAGTGACCTTCAGATGAAGATTGGTTTCGGGTTTGG 662
Query 767 TTTGGTTTGCCAAGTCGCAAACTTTTACTGTCACATATTGCTGAAGAATCTGAGGGACCC 826
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 663 TTTGGTCTGCCAAGTCGCAAACTTTTACTGTCACATTTTGCTGAAGAATCTTAGGGACCC 722
Query 827 CAGTGGGGCTGGAGGCTACCAGATTCCACGCGGTTTCCTCTTCAACATTGTTACATGTGC 886
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CAATGGGTCTGGAGGCTACCAGATTCCACGCGGTTTCCTCTTCAACATTGTTACATGTGC 782
Query 887 CAATTACACTACCGAGATTTACCAATGGCTAGGATTCAACATCGCTACTCAGACCATTGC 946
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 783 CAATTACACGACCGAGATTTACCAATGGCTAGGATTCAACATCGCTACTCAGACTGTTGC 842
Query 947 AGGATATGTTTTCCTCGCTGTTGCTGCTCTAATCATGACTAATTGGGCTCTTGGAAAGCA 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AGGATATGTTTTCCTCGCTGTTGCTGCTCTAATCATGACTAATTGGGCTCTTGGAAAGCA 902
Query 1007 CAGCCGTCTGAGAAAGATATTTGATGGAAAAGATGGAAAGCCAAAGTATCCAAGAAGATG 1066
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 903 CAGCCGTCTGAGAAAGATATTTGATGGAAAAGATGGAAAACCAAAGTATCCAAGAAGATG 962
Query 1067 GGTGATACTTCCTCCATTCCTTTAGAAGCCATTGTTGCTTATCA 1110
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 963 GGTGATACTTCCTCCATTCCTTTAGAAGCCATTGTCGCTTATCA 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5