BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55370.3
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485960 jgi|Araly1|485960|fgenesh2_kg.5__1952__AT3G55370.2 1061 0.0
> Ahg485960 jgi|Araly1|485960|fgenesh2_kg.5__1952__AT3G55370.2
Length=1547
Score = 1061 bits (574), Expect = 0.0
Identities = 662/705 (94%), Gaps = 3/705 (0%)
Strand=Plus/Plus
Query 324 GCAAGGGAACCAACATCAGCTAGAATGTGTCACAACTGACCAGAACCCTAATAATTACTT 383
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 185 GCAAGGGAACCAACATCAGCTAGACTGTGTCCCAACTGACCAGAACCCTAATAATTATTT 244
Query 384 ACGGCAGCTCTCATCACCACCGACTTCTCAGGTTGCAGGTTCGAGTCAAGCTAGAGTGAA 443
|||||||||||||||||||||| ||||||| | || | |||| ||||||| ||||||
Sbjct 245 ACGGCAGCTCTCATCACCACCGGCTTCTCAAGCTG-A--CACGAGCCAAGCTACAGTGAA 301
Query 444 TTCAATGGTGGAACGTGCTCGGATCGCAAAAGTCCCATTGCCTGAAGCAGCTCTAAATTG 503
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 302 TTCAATGGTGGAACGTGCTCGGATCGCGAAAGTCCCATTGCCTGAAGCAGCTCTAAATTG 361
Query 504 CCCTAGATGTGACTCAACCAATACTAAGTTCTGTTACTTCAATAACTATAGCCTTACTCA 563
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 362 CCCTAGATGTGACTCAACCAATACAAAGTTCTGTTACTTCAATAACTATAGTCTTACTCA 421
Query 564 ACCTCGCCATTTCTGCAAAACATGTCGTCGCTATTGGACACGTGGCGGTTCCTTGAGGAA 623
|||||||| ||||||||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 422 GCCTCGCCACTTCTGCAAAACATGTCGCCGCTATTGGACACGTGGCGGTGCCCTGAGGAA 481
Query 624 TGTTCCTGTTGGAGGAGGCTTTAGGAGGAACAAGAGAAGCAAATCCAGATCGAAATCTAC 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGTTCCTGTTGGAGGAGGCTTTAGGAGGAACAAGAGAAGCAAATCCAGATCGAAATCTAC 541
Query 684 GGTCGTGGTCTCGACTGATAATACTACTAGTACTTCATCACTTACTTCTCGCCCAAGTTA 743
||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 542 GGTCGTGGTCTCGACTGATAACAATACTACTACTTCATCACTTACTTCTCGCCCAAGTTA 601
Query 744 CTCAAACCCTAGCAAGTTTCATAGCTACGGTCAAATCCCGGAGTTTAATTCCAACTTGCC 803
|||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||| ||
Sbjct 602 CTCAAACCCTAGCAAGTTTCTTAGCTACGGTCAAGTCCCGGGGTTTTCTTCCAACTTACC 661
Query 804 CATCTTGCCTCCTCTCCAAAGCCTTGGAGATTACAATTCAAGCAACACTGGATTAGATTT 863
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 662 CATCTTGCCTCCTCTTCAAAGTCTCGGAGATTACAATTCAAGCAACACTGGATTAGATTT 721
Query 864 TGGTGGAACTCAAATAAGCAACATGATAAGTGGTATGAGTTCTAGTGGTGGGATCTTGGA 923
||| |||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 722 TGGCGGAATTCAAATAGGCAACGTGATAAGTGGTATGAGTTCCAGTGGTGGGATCTTGGA 781
Query 924 TGCATGGAGAATACCTCCATCACAACAAGCTCAGCAATTCCCTTTCTTGATCAACACTAC 983
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TCCATGGAGAATACCTTCATCACAACAAGCTCAGCAATTCCCTTTCTTGATCAACACTAC 841
Query 984 CGGATTGGTGCAATCTTCAAACGCGTTATATCCATTACTAGAAGG 1028
|||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 842 GGGATTGGTGCAATCTTCAAATGCGTTATATCCATCACTAGAAGG 886
Score = 407 bits (220), Expect = 1e-112
Identities = 244/256 (95%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1026 AGGCGGGGTTAGCGCCACGCAAACAAGAAATGTGAAGGCGGAAGAGAATGATCAGGATCG 1085
|||||||| | ||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 977 AGGCGGGGATGGCGCCGCGCAAGCGAGAAATGTGAAGGCGGAAGAGAATGATCAGGATCG 1036
Query 1086 GGGTAGGGATGGGGATGGAGTGAATAACTTATCAAGAAACTTTTTGGGTAATATCAACAT 1145
||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GGGGAGGGATGGGGACGGAGGGAATAACTTATCAAGAAACTTTTTGGGTAATATCAACAT 1096
Query 1146 AAACTCAGGCAGGAACGAGGAATACACATCATGGGGAGGTAACAGTTCTTGGACCGGTTT 1205
|||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1097 AAACTCAGCCAGGAACGATGAATACACATCATGGGGAGGTAATAGTTCTTGGACCGGTTT 1156
Query 1206 CACCTCCAACAACTCAACAGGCCATCTCTCATTCTAAGTACTCAGCACTAGCTATTCTTG 1265
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CAGCTCCAACAACTCAACAGGCCATCTCTCATTCTAAGTACTCAGCACTAGCTATTCTTG 1216
Query 1266 ATGATTCTTTTGTTGG 1281
||||||||||||||||
Sbjct 1217 ATGATTCTTTTGTTGG 1232
Score = 379 bits (205), Expect = 3e-104
Identities = 267/294 (91%), Gaps = 16/294 (5%)
Strand=Plus/Plus
Query 1326 AGATCAAACCATGCAGCTATATCCAAAGGCTAATTTTGAGGCTCAAAGGAAAGGTATGGT 1385
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1233 AGATCAAACCATGCAGCTATATCCAAAGGCTAATTTTGGGGCTCAAAGGAAAGGTATGGT 1292
Query 1386 TATAAAACTATC-TTTTTGATCTTTTAAAAGATCTTC--A--AAGTGTGAGTATGTTTAT 1440
| |||||||||| ||||| |||| ||| ||||||||| | ||||||||||||||| ||
Sbjct 1293 TGTAAAACTATCTTTTTTTATCTCTTAGAAGATCTTCAAATTAAGTGTGAGTATGTTAAT 1352
Query 1441 TGGTTGGCTTCTGGTGATATTTATGTTTTATTAGAATTTGGTCTTATATATTGGC--TAT 1498
||||||||||||||||||||||||||||||| |||| |||| | | ||||||| |||
Sbjct 1353 TGGTTGGCTTCTGGTGATATTTATGTTTTATCAGAA-TTGG---TGT-TATTGGCTATAT 1407
Query 1499 ATATAGAGGTGTGGGTGATATGTATGAATTCAAGAGTTGATGTTGGAAACTTTTTTGTGT 1558
|||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1408 ATATAGTGGTGTGGGTG--ATGTATGAATTCAAGAGTTGATGATGGAAACTTTTTTGTGT 1465
Query 1559 GTTCATTGAATAATCATCGAATTCTCAATTTCTTGGAGACCCATTATGAGACAT 1612
||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1466 GTTCATTGAATAATCATCGAATTCTCAATTTCTTGGA--CCCACTATGAGACAT 1517
Score = 230 bits (124), Expect = 3e-59
Identities = 171/192 (89%), Gaps = 10/192 (5%)
Strand=Plus/Plus
Query 1 TTATCCCATTCAGCTCCTCCCTtctctctctctctctctctctctctctctAGATCAATT 60
||||||||||||||| || || || ||||||||||||||||||||||||||||||||||
Sbjct 1 TTATCCCATTCAGCTTCT-CC--CT-TCTCTCTCTCTCTCTCTCTCTCTCTAGATCAATT 56
Query 61 CTTTCTTCTATGATGTGATTATCC-ACCATATCTGCGACCTCTTACCTAAAAA-GGATAC 118
||||||| |||||||||||| ||| ||||| | ||||||||||||||||||| ||||
Sbjct 57 CTTTCTTGTATGATGTGATT-TCCCACCATTTAGGCGACCTCTTACCTAAAAAAGGATTT 115
Query 119 AA-GTAAGAGATTCAAAGATGGTTTTCTCATCTCTTCCAGTGAATCAGTTCGATTCCCAA 177
|| || | | |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 116 AAAGTTA-A-ATTCAAAGATGGTTTTCTCATCTCTTCCAGTGAATCAGTTTGATTCACAA 173
Query 178 AATTGGCAGCAG 189
|| |||||||||
Sbjct 174 AACTGGCAGCAG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62125189595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5