BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55380.2

Length=997
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938469 jgi|Araly1|938469|scaffold_502660.1                        612    2e-174


> Ahg938469 jgi|Araly1|938469|scaffold_502660.1
Length=546

 Score =  612 bits (331),  Expect = 2e-174
 Identities = 357/370 (96%), Gaps = 0/370 (0%)
 Strand=Plus/Plus

Query  92   TCTCTCGATCGACCCTGTGACGATGGCTAATAACCAAGCAAGCCTTCTTCTGCAGAAACA  151
            |||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    TCTCTCAAGCGAGCCTGTGACGATGGCTAATAATCAAGCAAGCCTTCTTCTGCAGAAACA  60

Query  152  GCTTAAAGATCTGTGTAAGAAACCTGTTGATGGTTTCTCTGCTGGCCTCGTTGATGAGAA  211
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  61   GCTTAAAGATCTGTGTAAGAAACCTGTGGATGGTTTCTCTGCTGGGCTCGTTGATGAGAA  120

Query  212  GAACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTATGAAGGTGG  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GAACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTATGAAGGTGG  180

Query  272  CTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTTTCACCACCAACTGTGAC  331
             ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||
Sbjct  181  TTTTTTTAATGCAATTATGTCGTTTCCGGATAATTATCCAGTTGAACCACCAACTGTGAC  240

Query  332  GTTTACCTCGGAGATGTGGCATCCTAATGTTTATTCTGATGGAAAAGTTTGCATTTCTAT  391
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTTCACCTCGGAGATGTGGCATCCTAATGTTTATTCTGATGGAAAAGTTTGCATTTCTAT  300

Query  392  TCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCTGAACGTTGGACCCC  451
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  301  TCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCAGAACGTTGGACTCC  360

Query  452  TGTCCATACG  461
            ||||||||||
Sbjct  361  TGTCCATACG  370


 Score =  296 bits (160),  Expect = 2e-79
 Identities = 168/172 (98%), Gaps = 0/172 (0%)
 Strand=Plus/Plus

Query  568  AAAGCATTGTGTTGAGTATCATATCGATGCTCTCAGGTCCCAACGATGAGTCACCAGCGA  627
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  375  AAAGCATTGTGTTGAGTATCATATCGATGCTCTCAGGTCCCAACGACGAGTCACCGGCGA  434

Query  628  ATGTGGAAGCTGCAAAGGAATGGAGAGACAACAGAGCAGAGTTTAGGAAGAAAGTGAGTC  687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  ATGTGGAAGCTGCAAAGGAATGGAGAGACAACAGAGCAGAGTTTAGGAAGAAAGTGAGTC  494

Query  688  GCTGTGTGAGAAGATCGCAAGAGATGCTATGAACATCTCTCCAGCGtttttt  739
            ||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  495  GCTGTGTCAGAAGATCGCAAGAGATGCTATGAACATCTCTCCTGCGTTTTTT  546



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37055475324


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5