BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55390.1

Length=820
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485965 jgi|Araly1|485965|fgenesh2_kg.5__1957__AT3G55390.1        1013    0.0  


> Ahg485965 jgi|Araly1|485965|fgenesh2_kg.5__1957__AT3G55390.1
Length=596

 Score = 1013 bits (548),  Expect = 0.0
 Identities = 580/596 (97%), Gaps = 0/596 (0%)
 Strand=Plus/Plus

Query  163  TCTCCGCCATGCGCTCGCCGCATGCTTTCCGTAACGGCGAATCTCCGACTTTACGGGACC  222
            |||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||
Sbjct  1    TCTCCGCCATGCGCTCGCCGCATGCTTTCCGTAACGGCGAATCTCCGAGTTCGCGAGACC  60

Query  223  ATACTCACTTCCACTCAACCGTCACAGCTCAGAAACTCCGTCGATTCAActccttaatcc  282
            |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||
Sbjct  61   ATACTCACTTCCACTCAACCGTCGTAGCTCAGAAACTCCGTCGATTCAACTCTTTAATCC  120

Query  283  tcctcctccgtctcgcttctttctccttctctctcgcttccgccgtcttTATGCTCACCA  342
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  121  TCCTCCTCCGTCTCGCTTCTTTCTCTTTCTCTCTCGCTTCCGCCGTCTTTATGCTCACCA  180

Query  343  ATTCCCGCGGCTCCGCTTCTCCTCACTGGTACGATTTCGACGCTTTCAGATTCGTGTTTG  402
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTCCCGCGGCTCCGGTTCTCCTCACTGGTACGATTTCGACGCTTTCAGATTCGTGTTTG  240

Query  403  TGGCAAACGCGATCGTGGCGTTATACTCGGTGTTTGAAATGGGAACTTGCGTTTGGGAAT  462
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  241  TGGCAAACGCGATCGTGGCGTTATATTCGGTGTTTGAAATGGGAACTTGCGTTTGGGAAT  300

Query  463  TTTCAAGAGAAACCACCTTATGGCCTGAAGCTTTTCAGGTCTGGTTCGATTTTGGCCATG  522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  301  TTTCAAGAGAAACCACCTTATGGCCTGAAGCTTTTCAGGTCTGGTTCGATTTTGGTCATG  360

Query  523  ACCAGGTGTTCTCGTACCTATTGCTATCGGCGGGATCGGCTGCAGCAGCATTGGCTAGAA  582
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  361  ACCAGGTGTTCTCGTACCTATTGCTATCGGCAGGATCGGCTGCAGCAGCATTGGCTAGAA  420

Query  583  CGATGAGAGGTGGTGACACGTGTACGGCTAACAAAGCCTTTTGCTTGCAGTCAGATGTAG  642
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  CGATGAGAGGAGGTGACACGTGTACGGCTAACAAAGCCTTTTGCTTGCAGTCAGATGTAG  480

Query  643  CCATTGGCTTAGGCTTTGCTGCTTTTCTATTCTTAGCTTTCTCTTCTTGCTTCTCTGGTT  702
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  481  CCATTGGCTTAGGCTTTGCTGCTTTTCTCTTCTTAGCTTTCTCTTCTTGCTTCTCTGGTT  540

Query  703  TTCGTGTAGCTTGTTTCCTTATTACTGGCTCTCGTTTTCACCTTTACTCATGATGA  758
            ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  541  TTCGTGTCGCTTGTTTCCTTATTACCGGCTCTCGTTTTCACCTTTACTCATGATGA  596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30307719015


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5