BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55400.1
Length=2097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938472 jgi|Araly1|938472|scaffold_502663.1 2981 0.0
> Ahg938472 jgi|Araly1|938472|scaffold_502663.1
Length=1888
Score = 2981 bits (1614), Expect = 0.0
Identities = 1802/1893 (95%), Gaps = 11/1893 (1%)
Strand=Plus/Plus
Query 48 GGTGGATGTCCTCTTTCATCAATGGCGGCGAGGATAAACACTTCGCTTCATAACGCCCTC 107
|||| | || ||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GGTGAAGGTTCTC-TTAATCAATGGCGGCGAGGATAAACACTTCGCTTCATAACGCTCTC 59
Query 108 TCTTTTTTAAAGCCTTTTAACACTCCCCTCAA-TACCAAACCATTCTCTTTTAGAAGAAA 166
||||| ||||| |||||||||||||||||||| || |||||||||| | || | |||||
Sbjct 60 TCTTTGTTAAACCCTTTTAACACTCCCCTCAATTA-CAAACCATTCAC--TT-GTAGAAA 115
Query 167 CAGCTTCAGATTTTCCAAAAAGCTTCCTTATTATTCTCAGTTTTCCTCAGGGAAGAGAGC 226
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 116 CAGCTTCAGATTTTCCAAAAAGCTTCCTTATTATTCTCAATCTTCCTCAGGGAAGAGAGC 175
Query 227 TCTCTATTGCACTTCCAGTTCCCAGGAAAGTACCGTCGATGAAGGCGAGACATTTGTCCT 286
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 176 TCTCTATTGCACTTCCAGTTCCCAGGAAAGTACCGTCGATGGAGCCGAGACATTTGTCCT 235
Query 287 CACCACTCCTCTTTATTACGTTAATGCCCCTCCCCACATGGGTAGTGCTTACACCACTAT 346
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 236 CACCACTCCTCTTTATTACGTTAATGCCCCTCCTCACATGGGAAGTGCCTACACCACTAT 295
Query 347 CGCCGCCGATTCAATTGCTCGTTTCCAGAGACTGCTTGGTAAGAAGGTTATCTTTATCAC 406
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 296 CGCCGCCGATTCAATTGCTCGTTTCCAGAGGCTGCTTGGTAAGAAGGTTATCTTTATCAC 355
Query 407 AGGAACAGATGAACATGGTGAGAAGATAGCTACTTCAGCAGCTGCTAATGGACGTAATCC 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 356 AGGAACAGATGAACATGGTGAGAAGATAGCTACTTCAGCAGCTGCTAATGGACGCAATCC 415
Query 467 TCCTGAACATTGTGACCTCATTTCTCAATCTTATAGAACTCTTTGGAAAGATCTCGATAT 526
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGCTGAACATTGTGATCTCATTTCTCAATCTTATAGAACTCTTTGGAAAGATCTCGATAT 475
Query 527 AGCTTATGACAAATTCATTAGAACTACTGATCCTAAGCATGAAGCTATTGTAAAAGAGTT 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGCTTATGACAAATTCATTAGAACTACTGATCCTAAGCATGAAGCTATTGTAAAAGAGTT 535
Query 587 CTACGCTCGTGTTTTCGCAAACGGTGATATTTACAGAGCTGATTATGAAGGTCTTTACTG 646
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 536 CTACGCTCGAGTTTTCGCAAACGGTGACATATACAGAGCTGATTATGAAGGTCTTTACTG 595
Query 647 TGTTAACTGCGAGGAATATAAGGATGAGAAAGAGTTGCTTGAAAACAATTGTTGCCCTGT 706
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 596 TGTTAACTGCGAGGAATATAAGGATGAGAAAGAGCTGCTTGAAAACAATTGCTGCCCTGT 655
Query 707 CCATCAAATGCCATGTGTTGCAAGGAAAGAAGATAACTACTTCTTTGCTTTGTCGAAATA 766
||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 656 CCACCAAGCGCCATGTGTTGCAAGGAAAGAAGATAACTACTTCTTTGCTTTATCGAAGTA 715
Query 767 TCAGAAACCACTTGAAGACATTTTGGCCCAGAATCCTCGTTTTGTGCAGCCTTCGTATCG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCAGAAACCACTTGAAGACATTTTGGCCCAGAATCCTCGTTTTGTGCAGCCTTCGTATCG 775
Query 827 TCTTAATGAGGTACAAAGTTGGATAAAGAGTGGCTTAAGAGATTTTTCCATTTCTCGAGC 886
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TCTAAATGAGGTGCAAAGTTGGATAAAGAGTGGCTTAAGAGATTTTTCCATTTCTCGAGC 835
Query 887 ATTAGTGGATTGGGGAATTCCTGTTCCCGACGACGATAAGCAAACCATATATGTTTGGTT 946
|||||| |||||||||||||||||||| || ||| ||||||||||||| |||||||||||
Sbjct 836 ATTAGTAGATTGGGGAATTCCTGTTCCTGATGACAATAAGCAAACCATCTATGTTTGGTT 895
Query 947 TGATGCTCTACTTGGTTACATATCAGCTCTAACAGAGGACAACAAACAACAAAATCTAGA 1006
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 896 TGATGCTCTACTGGGTTACATATCAGCTCTAACAGAGGACAACAAGCAACAAAATCTAGA 955
Query 1007 AACTGCTGTTTCATTTGG-CTGGCCTGCTTCATTGCATTTGATCGGAAAGGATATTCTAC 1065
|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 956 AACTGCTGTTTC-TTTGGGCTGGCCTGCTTCATTGCATTTGATTGGAAAGGATATCCTAC 1014
Query 1066 GATTTCACGCTGTCTACTGGCCTGCCATGCTAATGTCTGCTGGTCTTGAAC-TTCCCAAG 1124
| ||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1015 GGTTTCATGCCGTCTACTGGCCTGCCATGCTAATGTCTGCTGGTCT-GAACCTTCCCAAG 1073
Query 1125 ATGGTGTTTGGCCATGGGTTTCTGACAAAGGATGGAATGAAGATGGGAAAATCGTTGGGG 1184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1074 ATGGTGTTTGGCCATGGGTTTCTGACAAAGGATGGGATGAAGATGGGAAAATCGTTGGGG 1133
Query 1185 AATACTCTAGAACCGTTTGAGTTGGTTCAGAAATTTGGGCCAGATGCCGTGAGGTATTTC 1244
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct 1134 AATACTCTAGAACCTTTTGAGTTGGTTAAGAAATTTGGGCCAGATGCGGTCAGGTACTTC 1193
Query 1245 TTCCTACGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGATTTATAAAA 1304
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1194 TTCCTTCGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGCTTTATAAAA 1253
Query 1305 ATCGTCAATGCACATCTCGCCAACACTATAGGAAATCTTCTTAACCGTACTCTTGGTCTT 1364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1254 ATCGTCAATGCACATCTCGCCAACACTATAGGAAATCTTCTGAACCGTACTCTTGGTCTT 1313
Query 1365 CTTAAAAAGAACTGTGAATCCACTTTAGTGGTAGACTCGACAGTTGCAGCCGAAGGAGTT 1424
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1314 CTTAAGAAGAACTGTGAGTCCACTTTAGTGGTAGACTCGACTGTTGCAGCCGAAGGGGTT 1373
Query 1425 CCTTTGAAAGACACAGTGGAGAAGCTGGTTGAGAAGGCTAGGACAAACTATGAAAATCTG 1484
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1374 CCTTTGAAAGACACAGTGGAGAAGCTGGTTGAAAAGGCTCGGACAAACTATGAAAATCTG 1433
Query 1485 TCACTATCATCAGCGTGTGAAGCTGTTTTAGAGATTGGAAATGCGGGAAATACCTACATG 1544
|| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1434 TCTCTATCATCGGCGTGTGAGGCTGTGTTAGAGATTGGAAATGCGGGAAATACCTACATG 1493
Query 1545 GATCAACGAGCACCATGGTTTCTGTTCAAACAAGGTGGTGTCTCAGCAGAAGAGGCAGCC 1604
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GATCAACGAGCACCTTGGTTCCTGTTCAAACAAGGTGGTGTCTCAGCAGAAGAGGCAGCC 1553
Query 1605 AAGGATCTGGTGATTATACTGGAAGTAATGAGAGTCATAGCGGTTGCGTTATCCCCCGTT 1664
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1554 AAGGATCTGGTGATTATACTGGAAGTAATGAGAGTTATAGCGGTTGCGTTATCCCCCGTT 1613
Query 1665 GCACCTTGCCTAAGTCTGAGGATCTATTCACAGCTTGGCTATACAGAGGATCAATTCAAT 1724
||||||||| ||||| ||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 1614 GCACCTTGCTTAAGTTTGAGGATATATTCACAGCTTGGCTATTCAGTTGATCAATTCAAT 1673
Query 1725 AGCATAACCTGGAGTGACACCAAATGGGGAGGGCTAAAGGGAGGACAAGTAATGGAGCAA 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AGCATAACCTGGAGTGACACCAAATGGGGAGGGCTAAAGGGAGGACAAGTAATGGAGCAA 1733
Query 1785 GCGAGTCCCGTATTTGCAAGGATCGAGCTGAATCCAGAGAAAGAAGAAGATGAGAAGAAG 1844
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1734 GCGAGTCCTGTATTTGCAAGGATCGACCTGAATCCAGAGAAAGAAGAAGAGGAGAAGAAG 1793
Query 1845 CCAAAGGTTGGTAAGAAAACTGGCAAAGCCAAGGTCAAAGTAGTAGAGCAAACTCCTACA 1904
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 1794 CCAAAGGTTGGTAAGAAAACCGGAAAAGCCAAGGTGAAAGTAGTAGAGCAAACTCCGACT 1853
Query 1905 GTAGCTGAAGCTTAAAACCAACTCCACAAAATC 1937
|||||||||||||||| ||||||||||||||||
Sbjct 1854 GTAGCTGAAGCTTAAA-CCAACTCCACAAAATC 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78884897395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5