BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55420.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485969 jgi|Araly1|485969|fgenesh2_kg.5__1961__AT3G55420.1 1563 0.0
> Ahg485969 jgi|Araly1|485969|fgenesh2_kg.5__1961__AT3G55420.1
Length=1024
Score = 1563 bits (846), Expect = 0.0
Identities = 962/1015 (95%), Gaps = 19/1015 (2%)
Strand=Plus/Plus
Query 1 CAGAAACCTGTCTCATGACGTTGtaataataataatatagcaaaatcaagaaacaacata 60
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1 CAGAAACCTGTCTCATGACGTTGTAATAATAAT-AT-T-GCAAAATCAAGAAACAACATA 57
Query 61 attcactaaaaataaagtaagt---a-aaagaaagaaagaaagagaTAGTGGCTCAAGTC 116
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 58 ATTCACTAAAAATAAAGTAAGTAAAAGAAAGAAAGAAAGAAAGAGATAGTGGCTCAAGTC 117
Query 117 TCAAACTCAATCAAAAGCACCAAACCAAAGTTACCAAACTTCTCATCACCaaaagagaga 176
||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 118 TCAAACTCAATCAAAAGCACCAAACCAAAGTTACCAAACTTCTCACCA-C-AAAGAGAGA 175
Query 177 agaagaagaaagaaacagagaatcgccatggcagagaaagagaagaaaacaaaaaagaag 236
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 176 AGAAGAAGAAAGAAACAGAGAACCGCCATGGCAGAGAAAGAGAAGAAAACCAAAAAGAAG 235
Query 237 aagaagaaagagaagCATCAATCTTCCGACATCTCTTTCAAGCCTTCTTCAGACGTAAAA 296
||||||||||||||||||||||||||||||||||||||||| || | || |||||||||
Sbjct 236 AAGAAGAAAGAGAAGCATCAATCTTCCGACATCTCTTTCAAACCAACCTCCGACGTAAAA 295
Query 297 GGACTCAAATTCGGCGGCCAAATAATCGTCAAATCATTCACAATCCGACGAGCAAGAACA 356
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GGTCTGAAATTCGGTGGCCAAATAATCGTCAAATCATTCACAATCCGACGAGCAAGAACA 355
Query 357 TTCGAGCTTCTTAAACTCCTCTCTCTCCCTTCTTCATCATCACCGCCGCTTCTTTCCACG 416
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 CTCGAGCTTCTAAAACTCCTCTCACTCCCTTCTTCATCATCACCGCCGCTTCTTTCCACG 415
Query 417 GCGGCTTACCTTCCGACAAACTTCACAATCCTTGCACACCACGCATGGCACACACTAACA 476
||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 416 GCGGCGTATCTTCCTACAAACTTCACAATCCTTGCACACCACGCATGGCATACACTAACA 475
Query 477 CTAGGTCTCGGAACAAGAAAGTCCAAAGTTGTGGTCTTCGTGTTCGAAACAGAGGCGATG 536
|| ||||||||||||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 476 CTCGGTCTCGGAACAAGAAAATCAAAAGTTGTAGTGTTCGTGTTCGAAACAGAGGCGATG 535
Query 537 AAATCATCCGTTGTGGCGGCGGAAGGAGGAATCTGGCCATCGGAGATTCCATTGGGAGAT 596
|||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 536 AAATCATCGGTTGTTGCGGCAGAAGGAGGAATCTGGCCGCCGGAGATTCCATTGGGAGAT 595
Query 597 GTGAACAAGAAGATGATCAGAAAGTTAAAGAACTGGGAGATGGCAAGGTTTAAGTTCAGA 656
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 596 GTGAACAAGAAGATGATCAGAAAGTTAAAGAACTGGGAGATGGCTAGGTTTAAGTTCAGA 655
Query 657 AAAGGTTGTATCACGTTTTACGTTTACGCCGTGAGAAACGCCGGAAATGAAGGGTTTGCG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AAAGGTTGTATCACGTTTTACGTTTACGCCGTGAGAAACGCCGGAAATGAAGGGTTTGCG 715
Query 717 GCGGCGGAGGACTTAAAGGTAATATTACAAGCGGTGGTGGCATTGAAAGATTTCATGGAT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GCGGCGGAGGACTTAAAGGTAATATTACAAGCGGTGGTGGCATTGAAAGATTTCATGGAT 775
Query 777 CACACCGCAATGCTTGTAATGCCCCACCAGAAAAGTATTAATTACAGCTCTTGTCCTCCT 836
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 776 CACACCGCAATGCTTGTAATGCCCCACCAGAAAAGTATTAATTACAACTCTTGTCCTCCT 835
Query 837 TTTGCCATGGCTCACTGAACTTTGAACAATATTATACAAGTGGGCCCtcttctctttttt 896
|||||||||||||||| |||||||||||||||| ||||||||||| |||||| | ||||
Sbjct 836 TTTGCCATGGCTCACT-AACTTTGAACAATATTC-ACAAGTGGGCC-TCTTCT-TCTTTT 891
Query 897 cttttcttttt--actccttttttttGTTGATATA--Gaa-aaaaaa-GTTCGGATTATT 950
||||||||||| ||||||||||||| |||||||| ||| |||||| ||||||||||||
Sbjct 892 CTTTTCTTTTTTCACTCCTTTTTTTTTTTGATATATAGAAGAAAAAAAGTTCGGATTATT 951
Query 951 ATTTATTTTTGGTTCCATAATGGGGTTGTTTGTTATTAATTTCCTGTAttttttt 1005
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 952 ATTTATTTTTGGTTCCATAATGGAGTTGTTTGTTATTAATTTCCTGTATTTTTTT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5