BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55430.1
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485970 jgi|Araly1|485970|fgenesh2_kg.5__1962__AT3G55430.1 2501 0.0
Ahg912297 jgi|Araly1|912297|Al_scaffold_0001_2551 505 5e-142
> Ahg485970 jgi|Araly1|485970|fgenesh2_kg.5__1962__AT3G55430.1
Length=1729
Score = 2501 bits (1354), Expect = 0.0
Identities = 1617/1740 (93%), Gaps = 34/1740 (2%)
Strand=Plus/Plus
Query 41 TATACACACGTATACG-CTATACAAAACGGTCATATCTATTAATTTTTATTATAAATACT 99
|||||||||||||||| ||| |||||||||||||||||||| | |||| | ||| | ||
Sbjct 6 TATACACACGTATACGCCTAGACAAAACGGTCATATCTATT--TATTTA-T-TAATTTCT 61
Query 100 TTCTCGATAAGAATaaaaaaaTCTATTCGTCGTAATAATAAAAACACAACTCAAACGATT 159
| | || | ||| | || | | |||| ||||||||||| | ||||||||||||
Sbjct 62 AT-T--AT-A-AAT-AGTTTCTCGA-T-ATCGTCATAATAAAAACTCTACTCAAACGATT 113
Query 160 CACGGGTTTCACTTGGAATCGTTTGGTTTTCTCATTTCCG-AA-AT-ATAAAAAGATGGC 216
||||||||||||||||||||||||| ||||||| |||||| || || ||||||| |||||
Sbjct 114 CACGGGTTTCACTTGGAATCGTTTGATTTTCTCGTTTCCGAAATATAATAAAAAAATGGC 173
Query 217 CAAAGCGCCACCGTCAATCTCTCTTCTCCTCCTCCTCTGCGCCGCCGTATTCCTCACCAT 276
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 174 CAAAGCGCCACCGTCAATCTCTCTTCTCCTCCTCCTCTCCGCCGCCGTATTCCTCACCAT 233
Query 277 CCCCGCCGTGATCTCCGCCATCGGTGTTAACTACGGAACTCTCGGAAACCTCCCACCACC 336
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 234 CCCCGCCGTGATCTCCGCCATCGGTGTTAACTATGGAACTCTCGGGAACCTTCCACCACC 293
Query 337 GACTCAGGTGGCTAACTTT-ATCAAGACACAAACTTCGATTGATAGCGTCAAGATCTTCG 395
|||||| ||||| || ||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 294 GACTCAAGTGGC-AAATTTCATCAAGACTCAAACTTCGATCGATAGCGTCAAGATCTTCG 352
Query 396 ATGTGAATCCCGATATCCTACGTGCCTTCGCTGGAACTGGTATCTCCGTCGTTGTCACCG 455
||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||
Sbjct 353 ATGTGAATCCCGATATCCTCCGTGCTTTCGCTGGAACTGGTATCTCCGTCGTCGTTACCG 412
Query 456 TTCCTAACGGTGATATTCCGGCGTTGGCTAACGGAAGACAAGCTCGTCGGTGGGTTTCGG 515
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 413 TTCCTAACGGCGATATTCCGGCGTTAGCTAACGGAAGACAAGCTCGTCGGTGGGTTTCGG 472
Query 516 TTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTCAGTCGGAAATGAGA 575
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 473 CTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTCTGTCGGAAATGAGA 532
Query 576 TTCTGCTCACCGGAGATAATAACATGATCAATAATCTCTTACCGGCGATGAGGAATCTTA 635
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 533 TTTTGCTCACCGGAGATAATAATATGATCAATAATCTCTTACCGGCGATGAGGAATCTTA 592
Query 636 ACAACGCTTTGGTTCGTGCTGGTGTCAGAGATGTTAAGGTTACAACCGCACACTCACTTA 695
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 ACAATGCTTTGGTTCGTGCTGGTGTCAGAGATGTTAAGGTCACAACCGCACACTCACTTA 652
Query 696 ACATCATAGCCTATGACCTGACCGGTGCACCAAGCAGCGGTAGATTCAGGCCGGGTTGGG 755
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 653 ACATCATAGCCTATGACCTGACCGGTGCACCTAGCAGCGGTAGATTCAGGCCGGGTTGGG 712
Query 756 ACAAAGGCATATTGGCTCCAATCCTAGCTTACCATCGCCGAACCAAGTCACCTTTCATGG 815
|||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 713 ACAAGGGCATATTGGCTCCAATCCTAGCTTACCATCGCAGCACCAAGTCTCCTTTCATGG 772
Query 816 TTAACCCGTACCCTTACTTTGGTTTTGACCCCAAAAACGTCAACTTCGCAATTTTCCGAA 875
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 773 TTAACCCGTACCCTTACTTTGGTTTTGACCCTAAAAACGTCAATTTCGCCATTTTCCGTA 832
Query 876 CACCGTACAAGGCAGTCCGTGACCCGTTCACCCGCCACGTCTACACCAACATGTTTGATG 935
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 833 CACCGTACAAGGCAGTCCGTGACCCGTTCACCCGCCATGTCTACACCAACATGTTTGATG 892
Query 936 CACTCATGGACTCGACATACTCAGCCATGAAAGCTCTTGGATACGGTGATGTTAACATTG 995
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 893 CACTCATGGACTCGACTTATTCTGCCATGAAAGCTCTTGGATACGGTGATGTTAACATTG 952
Query 996 TCGTTGGCGAGACTGGCTGGCCATCTGCTTGTGACGCACCTTGGTGCTCGCCTGCGAATG 1055
||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 953 TCGTTGGTGAGACGGGCTGGCCTTCTGCTTGTGATGCACCTTGGTGCTCGCCGGCTAATG 1012
Query 1056 CTGCTTGGTTCAACCTCAACATTATCAAACGTGCACAAGGCCAAGGGACACCTCTCATGC 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTGCTTGGTTCAACCTCAACATTATCAAACGTGCACAAGGCCAAGGGACACCTCTCATGC 1072
Query 1116 CTAACAGACGGTTCGAGACATACATTTTCGGTCTCTTCAACGAAGAAGGCAAACCCGGTC 1175
|||| ||| |||| ||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1073 CTAAAAGAAGGTTTGAGACTTACATTTTCGGTCTCTTCAATGAAGAAGGCAAGCCCGGTC 1132
Query 1176 CGACCGCAGAGCGTAACTGGGGACTTTTCCGAGCAGATTTCTCCCCGGTTTACGATGTTG 1235
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CGACCGCAGAGCGTAATTGGGGACTTTTCCGAGCAGATTTCTCCCCGGTTTACGATGTTG 1192
Query 1236 GTCTTCTCCGAAACGGACAAGGCGGTGGAGGCCGCCCAGCATTGCCCGCACCTAGTACTG 1295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1193 GTCTTCTCCGAAACGGACAAGGCGGTGGAGGCCGTCCAGCATTGCCCGCACCTAGTACTG 1252
Query 1296 CCGGCGGTAAATGGTGTGTAGCGAGGTCCGG-GGCGACGAATACTCAGCTGCAAGACAGT 1354
||||||||||||||||||| || || || || ||| |||||| | |||||||||||||
Sbjct 1253 CCGGCGGTAAATGGTGTGTGGCCAGATC-GGCGGCAACGAATGCACAGCTGCAAGACAAC 1311
Query 1355 ATTAATTGGGTGTGTGGTCAGGGTGTTGACTGTAAACCGATCCAAGCTGGTGGTTCGTGC 1414
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1312 ATTAATTGGGTGTGTGGTCAGGGGGTTGATTGTAAACCGATCCAAGCTGGTGGTTCGTGC 1371
Query 1415 TTTAACCCGAGCAGTTTGAGGACGCACGCATCTTTTGTTATGAATGCTTATTTCCAGAGC 1474
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1372 TTTAACCCGAGCAGTTTGAGGACGCACGCATCTTTTGTTATGAACGCTTATTTCCAGAGC 1431
Query 1475 CACGGCCGCACTGATGGTGCTTGTAACTTCAGTGGAACTGGTATGATCGTAGGGAACAAC 1534
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1432 CACGGCCGCACTGACGGTGCTTGTAATTTCAGTGGAACTGGTATGGTCGTAGGGAACAAC 1491
Query 1535 CCAAGCAATGGTGCATGTAAGTACTAAGGAGATTGTCTATGT--A-GTAGTA---TTTGT 1588
|||||||||||||| ||||||||||||| ||||||||||||| | |||||| |||||
Sbjct 1492 CCAAGCAATGGTGCGTGTAAGTACTAAG-AGATTGTCTATGTCTATGTAGTAGCATTTGT 1550
Query 1589 CTGGAAAATCCTAACATAATGGTTCTGAGGAACTTTGGATTTGAGAGATCATCAGCTTTG 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1551 CTGGAAAATCCTAACATAATGGTTCTGAGGAACTTTGGATTTGAGAGATCATCAGATTTG 1610
Query 1649 TGtttaatttcggattatcctaattttaagatttttttgttaattattttttcgctgatt 1708
|||||||||||||||||| ||||||||||| |||||| ||||||| ||||| || | |||
Sbjct 1611 TGTTTAATTTCGGATTATTCTAATTTTAAGGTTTTTT-GTTAATTCTTTTTCCGTTAATT 1669
Query 1709 ccttttatttaAA-TAAA----GTGGAACTTC-CATAAAATTTGCTTCAGCGTTACGCTT 1762
||||||||||||| |||| |||||||||| |||||| |||||||||||| |||||||
Sbjct 1670 CCTTTTATTTAAACTAAATAAAGTGGAACTTCTCATAAATTTTGCTTCAGCGGTACGCTT 1729
> Ahg912297 jgi|Araly1|912297|Al_scaffold_0001_2551
Length=351
Score = 505 bits (273), Expect = 5e-142
Identities = 316/337 (94%), Gaps = 2/337 (1%)
Strand=Plus/Plus
Query 323 AACCTCCCACCACCGACTCAGGTGGCTAACTTT-ATCAAGACACAAACTTCGATTGATAG 381
||||| |||||||||||||| ||||| || ||| |||||||| ||||||||||| |||||
Sbjct 1 AACCTTCCACCACCGACTCAAGTGGC-AAATTTCATCAAGACTCAAACTTCGATCGATAG 59
Query 382 CGTCAAGATCTTCGATGTGAATCCCGATATCCTACGTGCCTTCGCTGGAACTGGTATCTC 441
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 60 CGTCAAGATCTTCGATGTGAATCCCGATATCCTCCGTGCTTTTGCTGGAACTGGTATCTC 119
Query 442 CGTCGTTGTCACCGTTCCTAACGGTGATATTCCGGCGTTGGCTAACGGAAGACAAGCTCG 501
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 CGTCGTCGTTACCGTTCCTAACGGTGATATTCCGGCGTTAGCTAACGGAAGACAAGCTCG 179
Query 502 TCGGTGGGTTTCGGTTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTC 561
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCGGTGGGTTTCAGCTAACATTTTGCCGTTTCATCCTCAGACGAAGATTAAGTATATCTC 239
Query 562 AGTCGGAAATGAGATTCTGCTCACCGGAGATAATAACATGATCAATAATCTCTTACCGGC 621
||||| ||||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 240 TGTCGGGAATGAGATTTTGCTCACCGGAGATAATAACATGATTAACAATCTCTTACCGGC 299
Query 622 GATGAGGAATCTTAACAACGCTTTGGTTCGTGCTGGT 658
|||||||||||||||||| ||||||||||||||||||
Sbjct 300 GATGAGGAATCTTAACAATGCTTTGGTTCGTGCTGGT 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66353206790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5