BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55450.2
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485972 jgi|Araly1|485972|fgenesh2_kg.5__1964__AT3G55450.1 1877 0.0
Ahg482986 jgi|Araly1|482986|fgenesh2_kg.4__2046__AT2G39660.1 741 0.0
> Ahg485972 jgi|Araly1|485972|fgenesh2_kg.5__1964__AT3G55450.1
Length=1584
Score = 1877 bits (1016), Expect = 0.0
Identities = 1199/1283 (93%), Gaps = 30/1283 (2%)
Strand=Plus/Plus
Query 170 ATAAGAGCAGTAGTGGTCTCGATGATCTTCATCTCTCGAGCTGTAAATCTTCATCATCAG 229
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 ATAAGAGTAGTAGTGGTCTCGATGATCTTCATCTCTCGAGCTGTAAATCTTCATCATCAG 275
Query 230 CTACAGCTCATAAGACAGAAGGAGAAATCCTTAGCTCAACGACCGTCAAAAGCTTTAGCT 289
|| |||||| |||||||||||||| || ||||||||||||| ||| |||| ||||||||
Sbjct 276 CTGTAGCTCACAAGACAGAAGGAGAGATTCTTAGCTCAACGAGCGTTAAAAACTTTAGCT 335
Query 290 TTAATGAACTTAAACTCGCTACTAGAAACTTCAGATCGGACTCTGTTGTTGGAGAAGGTG 349
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 336 TTAATGAACTTAAACTAGCAACCAGAAACTTCAGATCGGACTCTGTTGTTGGAGAAGGTG 395
Query 350 GCTTTGGTTGTGTCTTTAGAGGTTGGCTTGATGAGACTACTCTTACTCCTACCAAATCTA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GCTTTGGTTGTGTCTTTAGAGGTTGGCTTGATGAGACTACTCTTACTCCTACCAAATCTA 455
Query 410 GCTCTGGTCTTGTTATTGCTGTTAAACGACTTAACCCTGATGGTTTTCAAGGTCACCGAG 469
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 456 GCTCTGGTCTTGTAATTGCTGTTAAACGACTTAACCCTGATGGTTTTCAAGGTCACCGTG 515
Query 470 AATGGCTGACAGAGATTAACTATTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATTGA 529
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 516 AATGGCTGACGGAGATCAACTACTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATTGA 575
Query 530 TTGGTTATTGCTTGGAAGATGAACAACGGCTTCTTGTGTATGAGTTTATGCACAAGGGTA 589
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 576 TTGGTTATTGCTTGGAAGATGAACAACGGCTTCTGGTGTATGAGTTTATGCACAAGGGTA 635
Query 590 GTCTTGAGAATCATCTGTTTGCAAATGGAAATAAGGATTTTAAGCCGCTATCTTGGATTC 649
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 636 GTCTTGAGAATCATCTGTTTGCAAATGGAAATCGGGATTTTAAGCCGCTCTCTTGGATTC 695
Query 650 TACGGATTAAGGTTGCACTTGATGCAGCTAAAGGTCTTGCATTTCTTCATAGTGATCCCG 709
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 696 TACGGATTAAGGTTGCACTTGATGCAGCTAAAGGTCTTGCATTTCTTCATAGCGATCCCG 755
Query 710 TCAAAGTCATTTACAGAGACATCAAGGCGTCAAACATCTTACTGGACTCGGACTTCAACG 769
|||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 756 TCAAAGTCATATACCGAGACATTAAGGCGTCAAACATCTTGCTGGACTCGGACTTCAACG 815
Query 770 CAAAGCTTTCAGACTTTGGTTTAGCGAGAGACGGTCCAATGGGAGA-ACAAAGTTATGTT 828
| ||||||||||||||||| |||||||| ||||||||||||||||| |||| | ||||||
Sbjct 816 CTAAGCTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAGACAA-GCTATGTT 874
Query 829 AGTACAAGGGTCATGGGTACTTTTGGGTACGCAGCTCCTGAGTATGTCTCAACAGGCCAC 888
|| ||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 875 AGCACAAGGGTCATGGGTACATTTGGCTACGCTGCTCCTGAGTACGTCTCAACAGGTCAC 934
Query 889 TTAAATGCTAGAAGCGACGTATACAGTTTCGGGGTTGTTCTGCTAGAACTACTATGTGGA 948
|| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 935 TTGAATGCTAGAAGCGACGTGTACAGTTTCGGGGTGGTTCTGCTAGAATTACTATGTGGA 994
Query 949 AGGCAAGCACTAGACCATAACCGCCCGGCCAAGGAGCAAAACCTTGTGGATTGGGCTCGA 1008
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGGCAAGCACTGGACCATAACCGCCCGGCCAAGGAGCAAAACCTTGTGGATTGGGCTCGA 1054
Query 1009 CCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCTTAACTCACAG 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1055 CCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCTTAACTCTCAG 1114
Query 1069 TACAAACCCGAAGGAGCAGTGAGACTGGCAAGCATTGCTGTGCAATGCCTATCATTCGAA 1128
|||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1115 TACAAACCCGAAGGGGCTGTGAGACTGGCAAGCATTGCTGTGCAGTGCCTCTCATTCGAA 1174
Query 1129 CCCAAATCACGTCCGACCATGGACCAAGTGGTTCGAGCCTTGGTACAGCTGCAAGACAGC 1188
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1175 CCCAAATCACGCCCGACCATGGACCAAGTGGTTCGAGCCTTGATACAGCTGCAAGACAGC 1234
Query 1189 GTGGTTAAACCGG--C--CA-A----------TGTTGACCCGCTTAAGGTTAAGGATACC 1233
||||||||||||| | || | ||||||||| |||||||||||||||||
Sbjct 1235 GTGGTTAAACCGGGTCTACATAAACCGGCAAATGTTGACCCATTTAAGGTTAAGGATACC 1294
Query 1234 AAGAAACTTGTGGGATTGAAAACAGAAGACAAGTACCAGAGAAACGGTTTAAACaaaaaa 1293
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1295 AAGAAACTTGTGGGATTGAAAACCGAAGACAAGTACCAGAGAAACGGTTTAAACAAAAAA 1354
Query 1294 aCCGTTGGATTGTAGTAGGTAGAGGGAAATATAAGGTTACTTGGTTAGGTACTCTTCATG 1353
||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 1355 CCCGTTGGATTGCAGTAGGTAG-GG-AAATATAAGGTTACT-GGTTAGGTACTCTTCATG 1411
Query 1354 TCTTCTTCTTGTGTATTGTAATATTGTGCGAAGTGATTTTGACATTTTGTAACACTGCTT 1413
|||||||||||||||||||||||||||| ||||||||||| | | | ||||||||
Sbjct 1412 TCTTCTTCTTGTGTATTGTAATATTGTGTGAAGTGATTTT--C-T-----A-CACTGCTT 1462
Query 1414 ATAGTTTTGCTCCTGAAATATTC 1436
||||||||||||||||||| |||
Sbjct 1463 ATAGTTTTGCTCCTGAAAT-TTC 1484
Score = 102 bits (55), Expect = 7e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1 AAACGATCTTCTTCATCATTCTACTAAATGGGTTCTTGTCTCAGTTCTCGTGTCCTTA 58
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 158 AAACGATCTTCTTCATCATTCTACTAAATGGGTTCTTGTCTCAGTTCTCGTGTTCTTA 215
> Ahg482986 jgi|Araly1|482986|fgenesh2_kg.4__2046__AT2G39660.1
Length=1767
Score = 741 bits (401), Expect = 0.0
Identities = 859/1076 (80%), Gaps = 47/1076 (4%)
Strand=Plus/Plus
Query 235 GCTCATAAGACAGAAGGAGAAATCCTT-AGCTCAACGACCGTCAAAAGCTTTAGCTTTAA 293
||||| ||||| ||||| || || || || || || ||||||||||||| | ||||||
Sbjct 368 GCTCAGAAGACGGAAGGGGAGAT-ATTGAGTTCGACCCCCGTCAAAAGCTTCACCTTTAA 426
Query 294 TGAACTTAAACTCGCTACTAGAAACTTCAGATCGGACTCTGT-TG-TTGGAGAAGGTGGC 351
||||| |||||||| || |||||||||||| | || | || || | ||||||||||||
Sbjct 427 CGAACTCAAACTCGCCACCAGAAACTTCAGACCAGA-T-AGTGTGATCGGAGAAGGTGGC 484
Query 352 TTTGGTTGTGTCTTTAGAGGTTGGCTT-GATGAGACTACTCTTACTCCTACCAAATCTAG 410
|||||||||||||||| ||| ||| || |||||||| ||||| ||||| || ||| || |
Sbjct 485 TTTGGTTGTGTCTTTAAAGGCTGG-TTAGATGAGACCACTCTCACTCCGACTAAACCTGG 543
Query 411 CTCTGGTCTT-GTTATTGCTGTT-AAACGACTTAACCCTGATGGTTTTCAAGGTCACCGA 468
| ||| || ||||| || ||| ||| | ||||||| || |||||||||||||||||
Sbjct 544 AACCGGT-TTGGTTATCGCCGTTAAAAAG-CTTAACCAAGAAGGTTTTCAAGGTCACCGT 601
Query 469 GAATGGCTGACAGAGATTAACTATTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATTG 528
||||||||||||||||| || || |||||||| || |||||||| ||| | || ||| |
Sbjct 602 GAATGGCTGACAGAGATCAATTACTTGGGGCAATTGAGTCACCCAAATCTAGTCAAACTA 661
Query 529 ATTGGTTATTGCTTGGAAGATGAACAACGGCTTCTTGTGTATGAGTTTATGCACAAGGGT 588
|| || |||||||| || |||||||| || |||||||| || ||||||||||| || ||
Sbjct 662 ATCGGGTATTGCTTAGAGGATGAACACCGTCTTCTTGTCTACGAGTTTATGCAAAAAGGA 721
Query 589 AGTCTTGAGAATCATCTGTTTGCA-AATGGAAAT-AAGGATTTTAAGCCGCTATCTTGGA 646
||||||||||||||||| || || || || | | |||||||||| || | |||
Sbjct 722 AGTCTTGAGAATCATCT-ATT-CAGAA--GAGGTGCA-TATTTTAAGCCACTCCCATGGT 776
Query 647 TTCTACGGATTAAGGTTGCACTTGATGCAGCTAAA-GGTCTTGCATTTCTTCATAGTGAT 705
|| ||||||| ||||||| ||||||||||| ||| |||||||| |||||||| || |||
Sbjct 777 TTTTACGGATCCAGGTTGCGCTTGATGCAGC-AAAGGGTCTTGCTTTTCTTCACAGCGAT 835
Query 706 CCCGTCAAAGTCATTTACAGAGACATCAAGGCGTCAAACATCTTACTGGACTCGGACTTC 765
||||||||||| || ||| ||||||| || || || ||||||||||| || ||||||| |
Sbjct 836 CCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGATTCGGACTAC 895
Query 766 AACGCAAAGCTTTCAGACTTTGGTTTAGCGAGAGACGGTCCAATGGGAGAACAAAGTTAT 825
|||||||| ||||| |||||||| |||| || |||||||||||||| || || |||
Sbjct 896 AACGCAAAACTTTCTGACTTTGGACTAGCTAGGGACGGTCCAATGGGTGATTTGAGCTAT 955
Query 826 GTTAGTACAAGGGTCATGGGTACTTTTGGGTACGCAGCTCCTGAGTATGTCTCAACAGGC 885
||||||||||||||||||||||| | ||| ||||| || |||||||| | ||| ||||
Sbjct 956 GTTAGTACAAGGGTCATGGGTACATATGGCTACGCCGCACCTGAGTACATGTCATCAGGT 1015
Query 886 CACTTAAATGCTAGAAGCGACGTATACAGTTTCGGGGTTGTT-CTGCTAGA-ACTACTAT 943
||||| ||||| |||||||| || ||||||||||| | | || || ||||| | | |||
Sbjct 1016 CACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAG-TATTGCTTCTAGAGA-TTTTAT 1073
Query 944 GTGG-AAGGCAAGCACTAGACCATAACCGCCCGGC-CAAGGAGCAAAACCTTGTGGATTG 1001
|| || || ||| | || |||||| | ||||| ||| || ||||||||||||||||
Sbjct 1074 CAGGTAA-GCGAGCGTTGGATCATAACAGGCCGGCTAAAGAAG-AAAACCTTGTGGATTG 1131
Query 1002 GGCTCGACCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCTTA- 1060
||||||||||||||||||||||| || |||||||| ||||| |||||||||||||| |
Sbjct 1132 GGCTCGACCATACCTCACAAGCAAACGCAAGGTTCTCCTAATCGTGGACACTCGGCT-AG 1190
Query 1061 ACTCACAGTACAAACCCGAAGGAGCAGTGAGACTGGCAAGCATTGCTGTGCAATGCCTAT 1120
|| |||||||| ||| |||| ||| |||||| |||| |||||||| |||||||| || |
Sbjct 1191 ACACACAGTACTTACCTGAAGAAGCCGTGAGAGTGGCCAGCATTGCGGTGCAATGTCTCT 1250
Query 1121 CATTCGAACCCAAATCACGTCCGACCATGGACCAAGTGGTTCGAGCCTTGGTACAGCTGC 1180
||||||||||||| || || |||||||||||||||||||| || |||||| ||| || |
Sbjct 1251 CATTCGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTTGCAACAACTTC 1310
Query 1181 AAGACAGCGTGGTTAAACCG-GCCAATGTTGACCCGCTTAAGGTTAAGGATACCAAGAAA 1239
| |||| | ||| |||||| | || | ||| | |||||||||||||||||||
Sbjct 1311 AGGACAACTTGGGAAAACCGAGTCA--G---ACCAA-TCC-GGTTAAGGATACCAAGAAA 1363
Query 1240 CTTGTGGGATTGAAAACAGAAGAC-AAGT-A-CCAGAGAAACGGTTTAAACaaaaa 1292
|||| | || ||||| | || |||| | || || |||||||||| |||||||
Sbjct 1364 CTTG-GTT-TT-AAAACTGGT-ACTAAGTCATCC-GAAAAACGGTTTACACAAAAA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5