BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55460.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485973 jgi|Araly1|485973|fgenesh2_kg.5__1965__AT3G55460.1 1469 0.0
> Ahg485973 jgi|Araly1|485973|fgenesh2_kg.5__1965__AT3G55460.1
Length=1076
Score = 1469 bits (795), Expect = 0.0
Identities = 1021/1120 (91%), Gaps = 55/1120 (5%)
Strand=Plus/Plus
Query 22 AAGGGCTTAGGGTTCACTTCAGATCTGTCTTTGAACATTGCTACTCTCAAGTGATCAAAT 81
||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||
Sbjct 1 AAGAGCTTAGGGTTCACTTTAGATCTGTCTTTGAACAATGCTACTCTCAAGTGA-CCAAG 59
Query 82 TAACTCCGTCGCAGGTGATGAGGAGATACAGTCCGCCTTATTACAGTCCTCCGAGGAGAG 141
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 CAACTCCGTCGCAGGTGATGAGGAGATACAGTCCGCCTTATTACAGTCCTCCAAGGAGAG 119
Query 142 GATACGGTGGTCGAGGTAGAAGtcctcctcctcctcctcctcGACGTGGATAtggtggtg 201
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 120 GATACGGTGGTCGAGGTAGAAG---TCCTCCTCCTCCTCCACGACGTGGATATGGTGGGG 176
Query 202 gtggtggtggtggtggACGTAGAGGATCTAGCCATGGAAGTCTCTTGGTTCGTAACATTC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTGGTGGTGGTGGTGGACGTAGAGGATCTAGCCATGGAAGTCTCTTGGTTCGTAACATTC 236
Query 262 CTCTTGATTGCAGACCAGAAGAGCTTCGTGAGCCCTTTGAGAGGTTTGGACCTGTGAGAG 321
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 237 CTCTTGATTGCAGACCTGAAGAGCTTCGTGTGCCCTTTGAGAGGTTTGGACCTGTGAGAG 296
Query 322 ATGTCTATATCCCCAGAGACTATTACTCAGGGCAACCGCGGGGGTTTGCGTTTGTGGAGT 381
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 297 ATGTCTATATCCCCAGAGACTATTACTCAGGGGAACCGCGGGGGTTTGCTTTTGTGGAGT 356
Query 382 TTGTTGATGCATATGATGCTGGGGAGGCTCAAAGAAGCATGAACAGGAGAAGCTTTGCTG 441
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 357 TTGTTGATGCATATGATGCTGGGGAGGCTCAAAGAAGCATGAACAGGAGAATATTTGCCG 416
Query 442 GAAGAGAGATAACGGTGGTTGTTGCTTCAGAGTCTAGGAAAAGGCCTGAAGAGATGCGTG 501
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 417 GAAGAGAGATAACTGTGGTTGTTGCTTCAGAGTCTAGGAAAAGGCCCGAAGAGATGCGTG 476
Query 502 TGAAGACTAGGACTCGTAGTAGGGAACCTTCAGGCTCCAG-GGATCGTTCTCATGGACGG 560
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 477 TGAAGACTAGGACTCGTAGCAGGGAACCTTCAGGCTCCAGAGG-TCGTTCTCATGGACGG 535
Query 561 TCTCGTTCACGTTCAATCTCTCGATCACGTTCTCCACGTCGTCCGTCAGATTCTAGAAGC 620
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 536 TCTCGTTCACGTTCAATCTCTCGATCACGCTCTCCTCGTCGTCCATCAGATTCTAGAAGC 595
Query 621 AGATACCGATCAAGGTCTTACTCTCCTGCACCAAGACGAAGAGGAGGTCCTCCTCGTGGG 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGATACCGATCAAGGTCTTACTCTCCTGCACCAAGACGAAGAGGAGGTCCTCCTCGTGGA 655
Query 681 GAAGAAGATG-AAAATTACAGTCGTAGGTCCTACTCCCCTGGCTATGAAGGTGCTGCTGC 739
|||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||| ||||
Sbjct 656 GAAGAAGATGGAAAAT-ACAGTCGCAGGTCCTATTCCCCTGGTTATGAAGGTGCTACTGC 714
Query 740 TGCTGCTCCAGATCGGGACAGAAATGGAGACAATGAGATTAGAGAAAAACCGGGCTATGA 799
|||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 715 TGCT-C-C-AGATCGGGACAGAAATGGAGACAATGAGATCAGAGAAAAACCGGGCTATGA 771
Query 800 AGCAGAGGATAGACGTCGTGGTGGAAGAGCAGTTTCAAGGTCGCCATCAGGATCCAGGTC 859
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 772 AGCAGAGGATAGACTTCGTGGTGGAAGAGCAGTTTCAAGGTCGCCATCGGGATCCAGGTC 831
Query 860 CAGGTCTGTGGAGGTATCTCCAAGATGAAACTTATGTGAAGAAGTGGCCGACCAAAACTT 919
||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||| |
Sbjct 832 CAGGTCTGTGGAGGTATCTCCAAGATGAAACATGTGTCAAGAAG---CCGACCAAAACAT 888
Query 920 TGTGCAACGCTTTATGGGTTTTGCAT-T-T-----CTCTAGTAGTGCGTCTCTGTGTCTT 972
| ||||||||||||||||| |||| | | | ||||||||||| |||||||||||||
Sbjct 889 TATGCAACGCTTTATGGGTATTGCCTCTGTTGTTTCTCTAGTAGTG-GTCTCTGTGTCTT 947
Query 973 TAAAAACTCCTTACTCTGGCTTGTCAAAGATATTTTGTCTTGTGATGTGATGTTACTTGA 1032
|||||||||| | | | | || ||| || | |||| | ||||||
Sbjct 948 TAAAAACTCCGT-C---G--T-GT----GAT-----GT---G--ATGT--T---ACTTGA 981
Query 1033 AATCGGTT-TCGGTTTATGGGTCTTATTATAAAATTGTATGAAGAAGATTGGTTATGCTT 1091
||||| | ||||||||||||||||||| | || ||||||||||| ||||||||||||
Sbjct 982 AATCG-TACTCGGTTTATGGGTCTTATTTTGAAGTTGTATGAAGA---TTGGTTATGCTT 1037
Query 1092 TTGATGTGAGACAGGTTTAAAACCCACAATGAG-CGAGTA 1130
||||||||||| | ||||||||||||||||| | ||||||
Sbjct 1038 TTGATGTGAGAAACGTTTAAAACCCACAATG-GTCGAGTA 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5