BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55470.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938480 jgi|Araly1|938480|scaffold_502671.1 904 0.0
> Ahg938480 jgi|Araly1|938480|scaffold_502671.1
Length=548
Score = 904 bits (489), Expect = 0.0
Identities = 528/547 (97%), Gaps = 2/547 (0%)
Strand=Plus/Plus
Query 102 AAAAAATAACTCTACAGAGATGGCTGTTGGAATCCTTGAGGTTAGTCTGATCAGTGGCAA 161
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAAAAAAAACTCTATAGAGATGGCTGTTGGAATCCTTGAGGTTAGTCTGATCAGTGGCAA 62
Query 162 AGGTCTCAAGCGCTCTGATTTTCTTGGTAAGATAGATCCATATGTTGAGATCCAATACAA 221
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 63 AGGTCTTAAGCGCTCTGATTTTCTTGGCAAGATAGATCCATATGTTGAGATCCAATACAA 122
Query 222 AGGGCAAACCCGCAAAAGCAGCGTTGCTAAAGAAGATGGAGGTAGAAATCCGACATGGAA 281
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AGGCCAAACCCGCAAAAGCAGCGTTGCTAAAGAAGATGGAGGTAGAAATCCGACATGGAA 182
Query 282 TGATAAATTGAAATGGAGAGCAGAGTTTCCTGGCTCCGGCGCCGACTACAAACTCATCGT 341
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 183 TGATAAATTGAAATGGAGAGCAGAGTTTCCTGGCTCCGGCGCGGACTACAAACTCATCGT 242
Query 342 CAAAGTCATGGATCATGATACTTTCTCCTCTGACGATTTCATTGGCGAAGCCACGGTACA 401
|||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||
Sbjct 243 CAAAGTCATGGATCATGATACTTTCTCCACCGATGATTTCATCGGCGAAGCCACGGTACA 302
Query 402 TGTGAAAGAGCTATTGGAAATGGGAGTGGAGAAGGGAACGGCGGAGCTAAGGCCAACCAA 461
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 303 TGTGAAAGAGCTGTTGGAAATGGGAGTGGAGAAGGGAACGGCTGAGCTAAGGCCAACCAA 362
Query 462 GTACAACATTGTTGACTCCGATCTCTCCTTTGTCGGCGAGCTTCTCATTGGAGTTTCTTA 521
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 363 GTACAACATTGTTGACTCCGATCTCTCCTTTGTCGGCGAGCTTCTCATCGGAGTTTCTTA 422
Query 522 CTCTCTTTTGCAAGACAGGGGAATGGATGGAGAACAGTTTGGAGGATGGAAGCATAGCCA 581
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 423 CTCTCTTTTGCAAGACAGGGGAATGGATGGGGAACAGTTTGGAGGATGGAAGCATAGCCG 482
Query 582 AGTTGATTAGTTTGGTTTCTTAAAACTGCTGATTTTATCTTCTTCTTCTA-TCTTTAGTG 640
||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 483 AGTTGATTAGTTTCGTTTCGTAAAACTGCTGATTTTATCTTCTTCTT-TAATCTTTAGTG 541
Query 641 TCAACAT 647
|||||||
Sbjct 542 TCAACAT 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5