BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55500.1
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938484 jgi|Araly1|938484|scaffold_502675.1 1275 0.0
Ahg482991 jgi|Araly1|482991|fgenesh2_kg.4__2051__AT2G39700.1 638 0.0
Ahg939949 jgi|Araly1|939949|scaffold_600493.1 148 6e-35
> Ahg938484 jgi|Araly1|938484|scaffold_502675.1
Length=823
Score = 1275 bits (690), Expect = 0.0
Identities = 777/819 (95%), Gaps = 5/819 (1%)
Strand=Plus/Plus
Query 67 AAATACTT-ACCAAAATGGCAATCAATCCATTGATTCTCTTAACCATATTCCCACTCTTC 125
||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 7 AAATA-TTCACCAAAATGGCAATCAATCAAATGATTCTCTTAACCATATTCCCACTCTTT 65
Query 126 CTTCTCTTGAGCTTCACCGACGCCGGAATCCCTAGAGTCTTCTCAGGTGGTTCTTGGCAA 185
|| |||||||||||||||||||||||||||||| | |||| |||||| || |||||||||
Sbjct 66 CTCCTCTTGAGCTTCACCGACGCCGGAATCCCTGGCGTCTACTCAGGCGGCTCTTGGCAA 125
Query 186 ACCGCTCACGCCACTTTCTACGGTGGAAACGATGCTTCGGGAACAATGGGTGGCGCGTGT 245
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 126 ACCGCTCACGCCACTTTCTATGGTGGCAACGATGCTTCCGGAACAATGGGTGGCGCGTGT 185
Query 246 GGATACGGGAATCTGTATAGCCAAGGATACGGAACAAACACGGCGGCGCTGAGCACATCG 305
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||
Sbjct 186 GGATACGGGAATCTGTACAGTCAAGGATACGGAACAAACACGGCGGCCCTGAGCACAGCG 245
Query 306 TTGTTTAACAGTGGTCAAAGCTGCGGCGCATGCTTCGAAATCAAATGTGTCAATGATCCC 365
||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 246 TTGTTCAACAGTGGCCAAAGCTGCGGCGCATGCTTTGAAATCAAATGTGTTAATGATCCT 305
Query 366 AAATGGTGTCACCCGGGTAATCCTTCTGTCTTCGTAACCGCAACCAACTTTTGCCCTCCA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AAATGGTGTCACCCGGGTAATCCTTCTGTCTTCGTAACCGCAACCAACTTTTGCCCTCCA 365
Query 426 AACTTAGCCCAGCCTAGCGACAATGGTGGCTGGTGCAACCCGCCACGCTCTCATTTCGAC 485
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 366 AACTTAGCCCAACCTAGCGACAATGGCGGATGGTGCAACCCGCCACGCTCTCATTTCGAC 425
Query 486 CTCGCCATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTCCCCATCTCT 545
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 426 CTCGCCATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTTCCCATATCT 485
Query 546 TACCGCAGGGTGGCATGTAGGAAGAGTGGAGGGATAAGGTTCACGATCAACGGTCACCGT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TACCGCAGGGTGGCATGTAGGAAGAGTGGAGGGATAAGGTTCACGATCAACGGTCACCGT 545
Query 606 TACTTCAACTTGGTGCTGATTACGAACGTGGCCGGAGCAGGAGACATCGC-GAGGACGAG 664
|||||||||||||||||||| ||||| ||||||||||||||||| ||| | |||||||||
Sbjct 546 TACTTCAACTTGGTGCTGATAACGAATGTGGCCGGAGCAGGAGATATC-CTGAGGACGAG 604
Query 665 TGTGAAAGGTTCAAAGACTGGTTGGATGAGTTTAACTAGGAACTGGGGACAGAACTGGCA 724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CGTGAAAGGTTCAAAGACTGGTTGGATGAGTTTAACTAGGAACTGGGGACAGAACTGGCA 664
Query 725 GTCTAATGCTGTTCTCGTTGGTCAGTCACTTTCCTTCCGTGTTACATCCAGCGATCGTAG 784
|||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||||
Sbjct 665 GTCTAATGCTGTTCTCGTTGGTCAGTCACTTTCCTTCCGTGTCACAGCCAGTGACCGTAG 724
Query 785 AACCTCTACTTCATGGAACATCGCTCCTTCGAACTGGCAGTTTGGACAAACCTTTGTCGG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AACCTCTACTTCATGGAACATCGCTCCTTCGAACTGGCAGTTTGGACAAACCTTTGTCGG 784
Query 845 AAAGAATTTCAGGGTCTAAAGTGAAT-TGATGATACCGA 882
||||||||||||||||||||||||| ||| |||| |||
Sbjct 785 AAAGAATTTCAGGGTCTAAAGTGAAAATGAGGATATCGA 823
> Ahg482991 jgi|Araly1|482991|fgenesh2_kg.4__2051__AT2G39700.1
Length=1280
Score = 638 bits (345), Expect = 0.0
Identities = 616/747 (82%), Gaps = 17/747 (2%)
Strand=Plus/Plus
Query 124 TCCTTCTCTTGAGCTTCACCGACGCCGGAATCCCTAGAGTCTT-CTCAGGTGGTTCTTGG 182
||||| | || ||| || ||||||| ||||||| | || || ||| || | | |||
Sbjct 167 TCCTT-T-TT-AGCCTCGCCGACGCTAGAATCCCCGGCGT-TTACTCCGGCAGCGCATGG 222
Query 183 CAAACCGCTCACGCCACTTTCTACGGTGGAAACGATGCTTCGGGAACAATGGGTGGCGCG 242
|||| ||| ||||||||||| |||||||| | ||| || || || |||||||| || ||
Sbjct 223 CAAAACGCACACGCCACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCT 282
Query 243 TGTGGATACGGGAATCTGTATAGCCAAGGATACGGAACAAACACGGCGGCGCTGAGCACA 302
||||| ||||| || || || |||||||| || || || |||||||| || |||||||
Sbjct 283 TGTGGTTACGGTAACCTATACAGCCAAGGCTATGGTACCAACACGGCAGCATTGAGCACG 342
Query 303 TCGTTGTTTAACAGTGGTCA-AAGCTGCGGCGCATGCTTCGAAATCAAATGTGTCAATGA 361
|| ||||||||| |||| | || || || || ||||| || | ||||| | ||| ||
Sbjct 343 GCGCTGTTTAACAATGGT-ATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGA 401
Query 362 TCCC-AAATGGTGTCACCCGGGTAATCCTTCTG-TCTTCGTAACCGCAACCAACTTT-TG 418
||| ||||||| ||| | |||| |||||| | || || | ||||||||||| ||| ||
Sbjct 402 -CCCTCAATGGTGCCACTCAGGTAGTCCTTC-GATCCTCATCACCGCAACCAA-TTTCTG 458
Query 419 CCCTCCAAACTTAGCCCAGCCTAGCGACAATGGTGGCTGGTGCAACCCGCCACGCT-CTC 477
||| |||||||| || |||||||||||||| || || ||||| |||||||| || | |
Sbjct 459 CCCACCAAACTTGGCTCAGCCTAGCGACAACGGAGGATGGTGTAACCCGCCTCG-TGAAC 517
Query 478 ATTTCGACCTCGCCATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTCC 537
||||||| || |||||||| || ||||||||||||||| | |||||||| ||||||||||
Sbjct 518 ATTTCGATCTAGCCATGCCTGTCTTCCTCAAGATCGCTCAATATCGTGCGGGCATTGTCC 577
Query 538 CCATCTCTTACCGCAGGGTGGCATGTAGGAAGAGTGGAGGGATAAGGTTCACGATCAACG 597
|| |||| |||||||| ||| | ||||| ||||| ||||||||||||||||| |||||||
Sbjct 578 CCGTCTCATACCGCAGAGTGCCTTGTAGAAAGAGAGGAGGGATAAGGTTCACAATCAACG 637
Query 598 GTCACCGTTACTTCAACTTGGTGCTGATTACGAACGTGGCCGGAGCAGGAGACATCGCGA 657
|||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| ||
Sbjct 638 GTCACCGTTACTTCAACTTGGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGA 697
Query 658 GGACGAGTGTGAAAGGTTCAAAGACTGGTTGGATGAGTTTAA-CTAGGAACTGGGGACAG 716
|| | ||||||||||||||| |||||||||||||||||| | | ||||||||||||||
Sbjct 698 GGGCTAGTGTGAAAGGTTCACGGACTGGTTGGATGAGTTTGAGC-AGGAACTGGGGACAA 756
Query 717 AACTGGCAGTCTAATGCTGTTCTCGTTGGTCAGTCACTTTCCTTCCGTGTTACATCCAGC 776
|||||||| |||||||||||| | ||||||||||||||||| |||||||| ||| |||
Sbjct 757 AACTGGCAATCTAATGCTGTTTTGGTTGGTCAGTCACTTTCTTTCCGTGTCACAGGCAGT 816
Query 777 GATCGTAGAACCTCTACTTCATGGAACATCGCTCCTTCGAACTGGCAGTTTGGACAAACC 836
|| |||||||| |||||||| |||||||| | |||||| |||||||||||||| ||||||
Sbjct 817 GACCGTAGAACATCTACTTCCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACC 876
Query 837 TTTGTCGGAAAGAATTTCAGGGTCTAA 863
|||||||| |||||||||||||| |||
Sbjct 877 TTTGTCGGGAAGAATTTCAGGGTTTAA 903
> Ahg939949 jgi|Araly1|939949|scaffold_600493.1
Length=804
Score = 148 bits (80), Expect = 6e-35
Identities = 339/461 (74%), Gaps = 30/461 (7%)
Strand=Plus/Plus
Query 201 TTCTACGGTGGAAACGATGCTTCGGGAACAATGGGTGGCGCGTGTGGATACGGGAATC-T 259
|||||||||||| | ||||| || || ||||||||||| || ||||| ||||| || | |
Sbjct 131 TTCTACGGTGGAGATGATGCATCCGGCACAATGGGTGGTGCTTGTGGGTACGGTAA-CTT 189
Query 260 GTATAGCCAAGGATA-CGG-AACAAACACGGCGGCGCTGAGCACATCGTTGTTTAACAGT 317
| |||||||| || || |||||| | ||||| ||||||| | ||||| || |||
Sbjct 190 ACACAGCCAAGGCTATGGGCTACAAAC-C-GCGGCTTTGAGCACGGCTTTGTTCAATAGT 247
Query 318 GGTCA-AAGCTGCGGCGCATGCTTCGAAATCA-AATGTGTCAATGATCCCAAATGGTGTC 375
|| || || || || || ||||| || | | |||||| ||||||| | ||||| |
Sbjct 248 GGGCAGAA-ATGTGGGGCCTGCTTTGAGCT-ACAATGTGAGGATGATCCTGAGTGGTG-C 304
Query 376 A-CCCGGGTAATCCTTCTGTCTTCGTAACCGCAACCAACTTTTGCCCTCCAAACTTAGCC 434
| ||| ||| ||| || || || | | || || ||||| || ||||||||||| |||
Sbjct 305 ATCCCTGGT--TCCATC-ATCGTC-T--CAGCTACAAACTTCTGTCCTCCAAACTTTGCC 358
Query 435 -CAGCCTAGCGACAATGGTGGCTGGTGCAACCCGCCACGCTCTCA-TTTCGACCTCGCC- 491
|||| | || |||||||| |||||||| || || | | || ||| ||| | |||
Sbjct 359 TTAGCC-AATGATAATGGTGGTTGGTGCAATCCTCCTCTCAAGCACTTT-GACTTGGCCG 416
Query 492 ATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTCCCCATCTC-TTACCG 550
| ||| | |||||| |||||||| |||| || || || || || || || | || | |
Sbjct 417 A-GCCTGCCTTCCTCCAGATCGCTCAGTACCGGGCTGGAATCGTTCCTGTCGCATT-CAG 474
Query 551 CAGGGTGGCATGT-AGGAAGAGTGGAGGGATAAGGTTCACGATCAACGGTCA-CCGTTAC 608
||||| ||||| || ||| |||||||||||||||||||||||||||| | |||| |
Sbjct 475 AAGGGTTCCATGTGAGAAAG-GTGGAGGGATAAGGTTCACGATCAACGGGAATCCGT-AT 532
Query 609 TTCAACTTGGTGCTGATTACGAACGTGGCCGGAGCAGGAGA 649
||| || | ||| |||| || ||||||| || || |||||
Sbjct 533 TTCGACCTCGTGTTGATCACAAACGTGGGTGGTGCTGGAGA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5