BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55510.1
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485977 jgi|Araly1|485977|fgenesh2_kg.5__1969__AT3G55510.1 2998 0.0
> Ahg485977 jgi|Araly1|485977|fgenesh2_kg.5__1969__AT3G55510.1
Length=2124
Score = 2998 bits (1623), Expect = 0.0
Identities = 1991/2159 (92%), Gaps = 63/2159 (3%)
Strand=Plus/Plus
Query 58 TCTCAAATTCCTCTGTGCTTTCGATTCTTACCAGTGAATTTTTCTTATTTTACTTATCTT 117
|||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 1 TCTCAAATTCCTCTGTGCTTTCGATTCTTACCGGTAAATTTTTCTTATTTTACTTCTCTT 60
Query 118 ATGCTCGTATTTGGAGGAACTGAGCAAAACCCTAGTTGTTTAATTGGGTCAAATTTGTAG 177
|||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATGCTCGTATTTAGAGGAATTGAGCAAAACCCTAGTTGTTTAATT--GTCAAATTTGTAG 118
Query 178 ATTGAGAATCCAAATTTATCGACCTAGTTATTGAA--------TCC-CGAGTTGATACCT 228
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 119 ATTGAGAATCTGAATTTATCGACCTAGTTATTGAATCTTTGTTTCCTCGAGTTGATACCT 178
Query 229 AGAAACCC-TTT----T-GCAGTCGCAGTAAAATGGGTAAGCTGGGGAAGAAAGCTAGGA 282
|||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 AGAAACCCTTTTGCAGTCGCAGTCGCAGTAAAATGGGTAAGTTGGGGAAGAAAGCTAGGA 238
Query 283 AATTTGCCAAGAAAAATCTCCAGTCTGTTGAGAAACGAAGCAGAAAGCTCAAGCCTTTTA 342
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 239 AATTTGCCAAGAAAAATCTCCAGTCTGTTGAGAAACGAAACAGAAAGCTGAAGCCTTTTT 298
Query 343 TCAAGAAGAAATTTGCAAAGAGAAATGAGCGTCACCAAGCAGGAGATAAACAGGAGAAGA 402
||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||
Sbjct 299 TCAAGAAGAAATTTGCAAAGAGAAATGAGCGTCACCAAGTGGGAGATGAAGAGAAGAAGA 358
Query 403 AGGTAGAGCAACAACCTAAGAAGAGATGTCAAGAAGAAGAATTTCAGGATATAGCAATAG 462
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 AGGTAGAGCAACAGCCTAAGAAGAGATGTCAAGAAGAAGAATTTCAGGATATATCAATAG 418
Query 463 ATGCAGTATTCGGAAAGGATGATGATGAAGTTCTCCGCGATGGTGATTCAGATAGTGATG 522
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 419 ATGCAGTATTCGGCAAGGATGATGATGAATTTCTCCGCGATTGTGATTCAGATAGTGATG 478
Query 523 GATATCTGGATGAGTTGGTAAATGAAACTGACTCAGATATTATGAAGTGCAAAGTACTCT 582
|||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||
Sbjct 479 GATATCTGGATGAGTTGGTAGATGAAGCTGACTCAGATATAATGAAGCACAAAGTACTCT 538
Query 583 CAAGATCT-TTTTTAGCCACTTGCTGTGACATG-GTTGATAAGGAGCAGTATGTTCCA-G 639
|| ||||| |||| || ||||||||||||| | |||||| || |||||| || |||| |
Sbjct 539 CAGGATCTGTTTTAAG-CACTTGCTGTGAC-CGAGTTGATGAGAAGCAGTCTG-TCCAGG 595
Query 640 CATTGGTTAGATTGTTAAATTGGTATCGAGCTGCATGTCAATATGGGCACGAACCATCAG 699
|||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 596 CATTAATAAGTTTGTTAAATTGGTATCGAGCTGCATGTCATTATGGGCACGAACCATCAG 655
Query 700 GGATTGCTAGGCCTAATATATACTATGACATAGAAGACAGTGAGACATTTGCCAAGGTCA 759
| ||| | |||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 656 GAATTCCGAGGCCTGATATATACTATGACATAGAAGACAGTGAGACATTTGCTAAGGTCA 715
Query 760 TAATTTTTGTCCTCCAAAAAGCTGATCACACTTTTAGGAGTATCCTGGGATTATCAGATT 819
| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 716 TGATTTTTATGCTCCAAAAAGCTGATCACACTTTCAGGAGTATCCTGGGATTATCAGACT 775
Query 820 CCAGTACTAAGGAGAAGATTTTGAAGTTGAAGAACAACCCAAAATGGGATAGTTTAAAAC 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CCAGTACTAAGGAGAAGATTTTGAAGTTGAAGAACAACCCAAAATGGGATAGTTTAAAAC 835
Query 880 CACTGGTCAAATCTTTCT-TTCGAAGTACCTTGCATCTTGTTAAGCAGGCAGGAGACTTG 938
|||||||||||||||| | |||||||||| |||||||||||||||||||||| ||| |||
Sbjct 836 CACTGGTCAAATCTTT-TGTTCGAAGTACTTTGCATCTTGTTAAGCAGGCAGCAGATTTG 894
Query 939 GAGATAATA-TCTTTTACCCTTACCCAACTTAGAGTCTCTATCGTGTTT-TTGGCCGCAT 996
||||||||| | |||| | ||||||||||||||||| |||||||||||| || |||||||
Sbjct 895 GAGATAATAGT-TTTTGCTCTTACCCAACTTAGAGTTTCTATCGTGTTTCTT-GCCGCAT 952
Query 997 TTCCAGATCTTCTGAAAAAATTGATCAAGATATCTGTTCATCTGTGGGTAACCGGTGAAG 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TTCCAGATCTTCTGAAAAAATTGATCAAGATATCTGTTCATCTGTGGGTAACCGGTGAAG 1012
Query 1057 AGACTATATCGCAGCAGGCTTTTCTAATCTTAAAAGACATCAGTATGGTTTTTAACTCGG 1116
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1013 AGACGCTATCGCAGCAGGCTTTTCTAATCTTGAAAGACATCAGTATGGTTTTTAACACAG 1072
Query 1117 AATGCTTTGATTCCTGCTTAATCAACATGTACAAAGCCTTTCTACATGACTGTGATATTC 1176
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1073 AATGCTTTGATACCTGCTTAATCAGCATGTACAAAGCCTTTCTACATGACTGTGATATTC 1132
Query 1177 CAAAGGCAAATTCAGAACAACG--T-CCGTTCCTCAGAGATTCTCTTGTTGAGCTATGCT 1233
|||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 1133 CAAAGGCAAATTCAGAACAACGTTTGCCGTTCCTCAGAGATTCCCTTGTTGAGCTATGCT 1192
Query 1234 CTCAAGATGTGCAGAAGTCTTATACCAAGGCCTCTGTTTCTATTACACAACTTGCCAAGT 1293
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CCCAAGATATGCAGAAGTCTTATACCAAGGCCTCTGTTTCTATTACACAACTTGCCAAGT 1252
Query 1294 TATTGAAGATGGCTCTCGCTACAAAGAATAAGGAAGCTGTTGAAAAGATACATAGTGGGG 1353
||||||| ||||||||| ||||||||||||||||||| || || ||||||||||| |||
Sbjct 1253 TATTGAAAATGGCTCTCACTACAAAGAATAAGGAAGCCGTCGAGAAGATACATAGCGGGC 1312
Query 1354 AGTACATAAATTGTGTTGATCTCTGGGTAAATTTTATTTCTGCCAACGTTCAGGATTGTG 1413
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1313 AGTACACAAATTGTGTTGATCTCTGGGTAAATTTTATTGCTGCCAACGTTCAGGATTGTG 1372
Query 1414 ATCTCCAGCCTCTGCTTTATACTATAGTTCAGGTTATAAATGGAGTTGCTCAACTAATTA 1473
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATATCCAGCCTCTGCTTTATACTATAGTTCAGGTTATAAATGGAGTTGCTCAACTAATTA 1432
Query 1474 TTGGACCACGTTACCTGCTCCTAAGGGTCAAATGTATCCACTGGCTCAACCATCTCTCTC 1533
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 1433 TTGGACCACGTTACCTGCTCCTAAGGGTTAAATGTATCCAATGGCTCAATCATCTCTCTC 1492
Query 1534 GTACAAGCGGTATATTCATTCCCATTGCATCATTGGTATTGGATATGTTGGAATATAAAA 1593
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1493 GTACAAGCGGTATATTCATTCCCATTGCATCGTTGGTATTGGATATGTTGGAATATAAAA 1552
Query 1594 CCACAAATGATGGTGAAAAGCAAGAACAGAAGCTTGAAGCTGTCTCAACCGTAAAGCTGC 1653
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1553 CCGCAAAGGATGGTGAAAAGCAAGAACAGAAGCTTGAAGCTGTCTCAACCGTAAAGCTTC 1612
Query 1654 CTAAGAATTGGTTGAAGTCCCAAAACTTCCAAGAACAGTGTATCTTTTCTGTGATTGAAC 1713
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1613 CTAAGAATTGGTTAAAGTCCCAAAATTTCCAAGAACAGTGTGTCTTTTCTGTGATTGAAC 1672
Query 1714 TGCTTGCTGTCCACTTTGCTCAATGGAGCTTCCATATATCATTTCCAGATCTTGCAACGA 1773
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1673 TGCTTGCTGTCCACTTTGCTCAATGGAGCTTCCACATATCATTTCCAGATCTTGCTACTA 1732
Query 1774 TTCCCGTCATGAGGCTGAAGAAATTTCACGAGAGAAGCACTATGGAAGGATTGAAGCGGG 1833
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1733 TTCCCGTCATGAGGCTGAAGAAATTTCACGAGAGAAGCACTATGGAAGGGTTGAAGCGGG 1792
Query 1834 TGGTGAAACGCTTTATCGAGCAGGTAGAGTCGAACATTGAGTTTGTTCAGAGGAAGAGAG 1893
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1793 TGGTGAAACGCTTTATAGAGCAGGTAGAGTCGAACATTGAGTTTGTTCAAAGGAAGAGAG 1852
Query 1894 ATGACGTGACTTTTTCTCCAAACGATCAACAATCTGCAGACACGTTTATGCAGCTTGAAA 1953
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1853 ATGACGTGACTTTTTCTCCAAACGATCAACAATCCGCAGACACGTTTATGCAGCTTGAAA 1912
Query 1954 AGCAAAATGCGAATGCTCCTTATACACAATACTATCAAAGCATCATAGACAAAGCTCTTG 2013
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1913 AGCAAAATACGAATGCTCCTTATACACAATACTATCATAGCATCATAGACAAAGCTCTTG 1972
Query 2014 GAACAAACAAGAAGAAGAAGAAGTGAG-CA-GTGATTGCACCAAAGCAGATT-CCCATGG 2070
||||||| ||||||||||||||| ||| || ||| | | | | || | ||| ||| |||
Sbjct 1973 GAACAAAGAAGAAGAAGAAGAAGAGAGGCAAGTG-TGGGAACTAAT-ATATTTCCCTTGG 2030
Query 2071 AACAT-CTCAAATGTTTGTTCACCATTTTTGCTGTCGTTTATTTATTCTTAGTGTTGGCT 2129
||| | | | ||| ||||||||||||||||| | | |||| | | ||
Sbjct 2031 AACTTGC-CTAAT-TTTGTTCACCATTTTTG-T-T-GTTT-----------G-G----CT 2069
Query 2130 TTCATGAATTATTTTCGAAAAGATCTACAAATACATTTTATGCAAAACTTTGGTGTAAT 2188
||||||||||||||||||||||||| | | ||||||| |||||||||||| |||||||
Sbjct 2070 TTCATGAATTATTTTCGAAAAGATCGA-A--TACATTT-ATGCAAAACTTTAGTGTAAT 2124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83836629245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5