BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55515.1
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938486 jgi|Araly1|938486|scaffold_502677.1 291 2e-78
> Ahg938486 jgi|Araly1|938486|scaffold_502677.1
Length=284
Score = 291 bits (157), Expect = 2e-78
Identities = 217/245 (89%), Gaps = 7/245 (3%)
Strand=Plus/Plus
Query 1 ATGTCTCGACTGAGAAACTCGGCACAGTTGCAG---CTATCGAAAAAGGAAA-GTCTTGG 56
|||||||||| ||||| |||| | ||||| ||| ||| |||||||||||| || | ||
Sbjct 21 ATGTCTCGACCGAGAAGCTCGCCGCAGTTTCAGTACCTACCGAAAAAGGAAAGGT-TCGG 79
Query 57 AGACAACGGAGGCGCGTTGAACACCACGCGT-TCCTCTAGACAGAAACAGGGGAAATACG 115
|||| |||||||||||| || | ||||| | || || ||||||||||||||||| ||||
Sbjct 80 AGACGACGGAGGCGCGTCGAGGAACACGC-TCTCGTCGAGACAGAAACAGGGGAAGTACG 138
Query 116 GTTTCACGAGGAAGTGTGGGAGATTGGTGAAAGAACAAAGAGCTCGCTTTTACATCATGA 175
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 139 GTTTCACGAGGAAATGTGGGAGATTGGTGAAGGAACAAAGAGCTCGCTTCTACATCATGA 198
Query 176 GGAGATGCGTCGTTATGCTTATTTGCTGGACTGATCATAATAATAACAACTCTGACCACT 235
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 199 GGAGATGCGTCGTTATGCTTATTTGCTGGACTGATCATAATAATAACAACTCCGAGGACT 258
Query 236 CCTAA 240
|||||
Sbjct 259 CCTAA 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8286852637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5