BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55520.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485979 jgi|Araly1|485979|fgenesh2_kg.5__1971__AT3G55520.1 1391 0.0
> Ahg485979 jgi|Araly1|485979|fgenesh2_kg.5__1971__AT3G55520.1
Length=1008
Score = 1391 bits (753), Expect = 0.0
Identities = 945/1031 (92%), Gaps = 40/1031 (4%)
Strand=Plus/Plus
Query 4 AACACGTGACGTCAAAAGCATCGGATTagagaaagaagaagaagaagaagaagCCGATTC 63
||||||||||||| ||||||||||||| || |||||||||| ||||||||||
Sbjct 1 AACACGTGACGTCGAAAGCATCGGATT---------AG-AGAAGAAGAA-AAGCCGATTC 49
Query 64 TAGGAAAAATC-CGATACTC-TTTGGACAGTCTATGGCCACCGATCTCTACGGCGATCTC 121
|||||||| || || |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 50 TAGGAAAATTCTCG--ACTCATTTGGGCAGTCTATGGCCACCGATCTCTACGGCGATCTC 107
Query 122 TTTCCGGTTATCACTTCGTCACTACACATTTGCTTCTTCCGTTTTCGTATCGGATCGA-A 180
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
Sbjct 108 CTTCCGGTTATCACTTCGTCACTACACATTTACTTCTTCCGTTTTCGTATCCGATC-AGA 166
Query 181 TACTATTCATCTTTCTTCGAATCGGGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 167 GACTATTCATCTTTCCTCGAATCGGGTTTCTTTGAACCTTTGAAGCTATGGGGGATGCGA 226
Query 241 TCGATTTGAGTGGAGATGGTGGCGTCTTGAAAAAGATTGTAAGGAGTGCCAAACCTGATG 300
||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 227 TCGATTTGACTGGAGATGGTGGAGTCTTGAAAGAGATTGTAAGGAGAGCCAAACCTGATG 286
Query 301 CTATTTCACCCTCTGATGATCTTCCTGTTGTCGATGTTCATTATGAGGGTATCTTGGCTG 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 287 CTGTTTCACCCTCTGATGATCTTCCTGTTGTCGATGTTCATTATGAGGGTATATTGGCTG 346
Query 361 AAGACGAAAAGGT-TTTCGACACTACTCGCGAAGACAATCTTGTTTTCTCCTTTGAGTTA 419
||||||||||||| ||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 347 AAGACGAAAAGGTCTTT-GACACTACACGCGAAGACAATCTGGTTTTCTCTTTTGAGTTA 405
Query 420 GGAACAGGCAGTGTTATCCGTTCTTGGGACATTGCTCTTAAAACCATGAAGGTTGGAGAA 479
||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 406 GGAACAGCCAGTGTTATCCGATCTTGGGACATTGCACTTAAAACCATGAAGGTTGGAGAA 465
Query 480 GTTGCAAAAATTACATGTAAGCCAGAATATGCTTACGGAAGAGCCGGGTCTCCTCCCGAC 539
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 466 ATTGCAAAACTCACATGTAAGCCAGAATATGCTTACGGAAGAGCCGGATCTCCTCCCGAC 525
Query 540 ATCCCACCTGATGCAACTTTGAT-TTTCGAGGTGGAATTGGTTGCTTGTAGACCGAGGAA 598
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 526 ATCCCACCGGATGCAACTTTGATCTTT-GAGGTGGAATTGGTTGCTTGTAGACCGAGGAA 584
Query 599 AGGTGCTAGTGTTGGAAGTGTTTCTGAAGAGAGAGCCAGGCTAGAAGATCTgaagaagca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AGGTGCTAGTGTTGGAAGTGTTTCTGAAGAGAGAGCCAGGCTAGAAGATCTGAAGAAGCA 644
Query 659 gagagagattgctgcagctgcgaaagaggatgataagaaaaagagagaagaagCAAAAGC 718
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAGAGAGATTGCTGCAGCTGCTAAAGAGGATGATAAGAAAAAGAGAGAAGAAGCAAAAGC 704
Query 719 TGCTGCAGCTGCTAGGATTCAAGCTAAGCTAGACGCTAAGAAAGGTCCAGGCAAAGGAAA 778
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 705 TGCTGCAGCTGCTAGGATTCAAGCTAAGCTAGACGCTAAGAAGGGTCAAGGCAAAGGAAA 764
Query 779 AGGCAAAGGCAAAGCTAAATAAGTCGAATGCAAAA----G-A-C-CTGTCA--CTACTAT 829
||||||||||||||||||||||||| || |||||| | | | || | | |||||||
Sbjct 765 AGGCAAAGGCAAAGCTAAATAAGTCAAAAGCAAAATTATGTAACTCTTTAATACTACTAT 824
Query 830 TTCATGATGAATCTAAATCAAACTTTTGGAAAGGGAGAGTCATC-AGTTACATCATATTG 888
|||||||||||||||||||||||||||||||||| ||||||||| | | | | ||||
Sbjct 825 TTCATGATGAATCTAAATCAAACTTTTGGAAAGGCAGAGTCATCCA-TCAGTT-ATATC- 881
Query 889 AGTTATTGACCATTACATGATTTGTTTGGGGTTT-AATTCGCACGCACATTAATAACATA 947
| | ||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||| |
Sbjct 882 A-T-ATTGACCGTTACATGATTTGTTTGGGATTTTAATTCGCACACACATTAATAACACA 939
Query 948 AACAAGTGTTCG-AAACCAAACTTTTCAAACCATGTCGGAAGCATCATCATCAATCTCAT 1006
| ||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 940 A-CAAGTGT-CGGAAACCAAACTTTTTAAACCATGTCGGAAGCATCATCATCGATCTCAT 997
Query 1007 CTTGTTCTTGC 1017
|||||||||||
Sbjct 998 CTTGTTCTTGC 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5