BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55530.1 Length=1164 Score E Sequences producing significant alignments: (Bits) Value Ahg324076 jgi|Araly1|324076|fgenesh1_pm.C_scaffold_5001620 1332 0.0 Ahg485979 jgi|Araly1|485979|fgenesh2_kg.5__1971__AT3G55520.1 243 3e-63 > Ahg324076 jgi|Araly1|324076|fgenesh1_pm.C_scaffold_5001620 Length=819 Score = 1332 bits (721), Expect = 0.0 Identities = 789/822 (96%), Gaps = 3/822 (0%) Strand=Plus/Plus Query 169 ATGAGCTTTGTTTTCCGGGGAAGTAGAGGAGATTTAGAAAGCGGATTCTCGGGTGGTTTT 228 ||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||| Sbjct 1 ATGAGTTTTGTTTTCCGGGGAGGTAGAGGAGATTTAGAAAGCGGATTCTC--G-GGTTTT 57 Query 229 CTACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTC 288 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 ATACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTC 117 Query 289 GCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCGCATCAGATGCCTCCT 348 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 118 GCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCACATCAGATGCCTCCT 177 Query 349 AATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACGCTTAGGATGTAT 408 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 178 AATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACACTTAGGATGTAT 237 Query 409 GCTACTTGCCAACAACTTCAAGCTCATGCTCAGGCTCAGGCTGCAGCAGCAAGTGGCCTC 468 || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 238 GCGACTTGCCAACAACTTCAAGCTCAGGCTCAGGCTCATGCTGCAGCAGCAAGTGGCCTC 297 Query 469 TTTAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGG 528 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TTCAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGG 357 Query 529 CGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGAT 588 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 358 CGTCTTCAAGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAGTTTGATGACTTAGAT 417 Query 589 TATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAA 648 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TATGAAACTCTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAG 477 Query 649 GAGATAAATGCACTTCCAGTTCACAAGTACAAGGTGTTGGATCCTGAAAATGGTTGCTCT 708 |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| || Sbjct 478 GAGATAAACGCACTTCCAGTACACAAGTACAAGGTGTTAGATCCTGAAAATGGTTGCGCT 537 Query 709 TTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAGAAGATGCTAGATTCTGCCAATGAA 768 |||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||| Sbjct 538 TTGGCAAAGCAAGCATCAACCTCATCCTCAGCTGAGAAGAAGCAAGATTCTGTCAATGAA 597 Query 769 AGTAAAAAAGGAACAGAAGATGAGCTCACATGTAGTGTTTGCCTAGAACAAGTTACCGTA 828 |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 598 AGTACAAAAGGAACAGAAGATGAGCTTACTTGTAGTGTTTGCCTAGAACAAGTTACCGTA 657 Query 829 GGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAGTTTCATGCAGGATGTATCGATCCA 888 |||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 658 GGGGAAGTTGTTCGCACCTTACCTTGCTTGCATCAGTTTCATGCAGGATGTATTGATCCA 717 Query 889 TGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTTAGAGCTCATTCAGGATGGCAA 948 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 718 TGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTCAGAGCTCATTCAGGATGGCAA 777 Query 949 GAACAAGATGAGATTGATGATGATGCTTCCGACATGGTTTGA 990 |||||||||||||| ||||||||||||||||||||||||||| Sbjct 778 GAACAAGATGAGATCGATGATGATGCTTCCGACATGGTTTGA 819 > Ahg485979 jgi|Araly1|485979|fgenesh2_kg.5__1971__AT3G55520.1 Length=1008 Score = 243 bits (131), Expect = 3e-63 Identities = 178/199 (89%), Gaps = 10/199 (5%) Strand=Plus/Minus Query 945 GCAAGAACAAGATGAGATTGATGATGATGCTTCCGACATGGTTTGAAAAGTTTGGTTT-C 1003 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | Sbjct 1008 GCAAGAACAAGATGAGATCGATGATGATGCTTCCGACATGGTTTAAAAAGTTTGGTTTCC 949 Query 1004 GAACACTTGTTTATGTTATTAATGTGCGTGCGAATT-AAACCCCAAACAAATCATGTAAT 1062 | ||||||| || ||||||||||||| ||||||||| ||| |||||||||||||||||| Sbjct 948 G-ACACTTG-TTGTGTTATTAATGTGTGTGCGAATTAAAATCCCAAACAAATCATGTAAC 891 Query 1063 GGTCAATAACTCAATATGATGTAACT-GATGACTCTCCCTTTCCAAAAGTTTGATTTAGA 1121 ||||||| | | |||| | | | | ||||||||| ||||||||||||||||||||||| Sbjct 890 GGTCAAT-A-T-GATAT-AACTGA-TGGATGACTCTGCCTTTCCAAAAGTTTGATTTAGA 836 Query 1122 TTCATCATGAAATAGTAGT 1140 ||||||||||||||||||| Sbjct 835 TTCATCATGAAATAGTAGT 817 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43422002463 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5