BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55530.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324076 jgi|Araly1|324076|fgenesh1_pm.C_scaffold_5001620 1332 0.0
Ahg485979 jgi|Araly1|485979|fgenesh2_kg.5__1971__AT3G55520.1 243 3e-63
> Ahg324076 jgi|Araly1|324076|fgenesh1_pm.C_scaffold_5001620
Length=819
Score = 1332 bits (721), Expect = 0.0
Identities = 789/822 (96%), Gaps = 3/822 (0%)
Strand=Plus/Plus
Query 169 ATGAGCTTTGTTTTCCGGGGAAGTAGAGGAGATTTAGAAAGCGGATTCTCGGGTGGTTTT 228
||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 1 ATGAGTTTTGTTTTCCGGGGAGGTAGAGGAGATTTAGAAAGCGGATTCTC--G-GGTTTT 57
Query 229 CTACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTC 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ATACCCGAAAGACGAGCTATGCGTGTTCATGGAGCTCGACCAGTTAATTCTAATTCCCTC 117
Query 289 GCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCGCATCAGATGCCTCCT 348
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 GCTTTTCTGGTTACAGTTCTTTTGCTGTTTATGATTCTCAATTCACATCAGATGCCTCCT 177
Query 349 AATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACGCTTAGGATGTAT 408
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 AATTTCCTGCTGTGGCTTGTGCTTGGGGTGTTTTTGATGGCAACGACACTTAGGATGTAT 237
Query 409 GCTACTTGCCAACAACTTCAAGCTCATGCTCAGGCTCAGGCTGCAGCAGCAAGTGGCCTC 468
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 238 GCGACTTGCCAACAACTTCAAGCTCAGGCTCAGGCTCATGCTGCAGCAGCAAGTGGCCTC 297
Query 469 TTTAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGG 528
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTCAGCCATACTGAGCTGAGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGG 357
Query 529 CGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGAT 588
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 CGTCTTCAAGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAGTTTGATGACTTAGAT 417
Query 589 TATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAA 648
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TATGAAACTCTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTATGAGCGAGGAG 477
Query 649 GAGATAAATGCACTTCCAGTTCACAAGTACAAGGTGTTGGATCCTGAAAATGGTTGCTCT 708
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 478 GAGATAAACGCACTTCCAGTACACAAGTACAAGGTGTTAGATCCTGAAAATGGTTGCGCT 537
Query 709 TTGGCAAAGCAAGCGTCAACCTCATCCTCAGCTGAGAAGATGCTAGATTCTGCCAATGAA 768
|||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 538 TTGGCAAAGCAAGCATCAACCTCATCCTCAGCTGAGAAGAAGCAAGATTCTGTCAATGAA 597
Query 769 AGTAAAAAAGGAACAGAAGATGAGCTCACATGTAGTGTTTGCCTAGAACAAGTTACCGTA 828
|||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 598 AGTACAAAAGGAACAGAAGATGAGCTTACTTGTAGTGTTTGCCTAGAACAAGTTACCGTA 657
Query 829 GGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAGTTTCATGCAGGATGTATCGATCCA 888
|||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 658 GGGGAAGTTGTTCGCACCTTACCTTGCTTGCATCAGTTTCATGCAGGATGTATTGATCCA 717
Query 889 TGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTTAGAGCTCATTCAGGATGGCAA 948
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 TGGTTGAGACAGCAAGGAACATGTCCTGTCTGTAAATTCAGAGCTCATTCAGGATGGCAA 777
Query 949 GAACAAGATGAGATTGATGATGATGCTTCCGACATGGTTTGA 990
|||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 GAACAAGATGAGATCGATGATGATGCTTCCGACATGGTTTGA 819
> Ahg485979 jgi|Araly1|485979|fgenesh2_kg.5__1971__AT3G55520.1
Length=1008
Score = 243 bits (131), Expect = 3e-63
Identities = 178/199 (89%), Gaps = 10/199 (5%)
Strand=Plus/Minus
Query 945 GCAAGAACAAGATGAGATTGATGATGATGCTTCCGACATGGTTTGAAAAGTTTGGTTT-C 1003
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1008 GCAAGAACAAGATGAGATCGATGATGATGCTTCCGACATGGTTTAAAAAGTTTGGTTTCC 949
Query 1004 GAACACTTGTTTATGTTATTAATGTGCGTGCGAATT-AAACCCCAAACAAATCATGTAAT 1062
| ||||||| || ||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 948 G-ACACTTG-TTGTGTTATTAATGTGTGTGCGAATTAAAATCCCAAACAAATCATGTAAC 891
Query 1063 GGTCAATAACTCAATATGATGTAACT-GATGACTCTCCCTTTCCAAAAGTTTGATTTAGA 1121
||||||| | | |||| | | | | ||||||||| |||||||||||||||||||||||
Sbjct 890 GGTCAAT-A-T-GATAT-AACTGA-TGGATGACTCTGCCTTTCCAAAAGTTTGATTTAGA 836
Query 1122 TTCATCATGAAATAGTAGT 1140
|||||||||||||||||||
Sbjct 835 TTCATCATGAAATAGTAGT 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5