BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55540.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324077 jgi|Araly1|324077|fgenesh1_pm.C_scaffold_5001621 1618 0.0
> Ahg324077 jgi|Araly1|324077|fgenesh1_pm.C_scaffold_5001621
Length=1005
Score = 1618 bits (876), Expect = 0.0
Identities = 962/1005 (96%), Gaps = 0/1005 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCCATGATCAAAGATGTTGATCCTTCCGTATTGTTAGCCAATGGCTTTATTCAA 60
|||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 1 ATGGATTCCATGATGAAAGATGTTGATCCGTCCGTATTGTTAGCCAATGACTTTATACAG 60
Query 61 TCCCACTTCACGAACTTAAATACTTCCGAAGCATTAGCCAATTGCTTTCTCCAATCTTAC 120
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCACTTCACGAATTTAAATACTTCCGAAGCATTAGCCAATTGCTTTCTCCAATCTTAC 120
Query 121 TTCCTGAATCTAGGAGTCTATCCCGAGGTAGTTCAGATGATGTGGTATGCCGACGACAGT 180
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 121 TTCCTGAATCTAGGAGTCTATCCCGAGGTAGTTTACATGATGTGGTATGCCGACGACAGT 180
Query 181 GTTATGACTAGACCCGGTCCTGATGGTACAATGATGTCTTTTACATCGCCTGAGGCAATT 240
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTATGACTAGACCCGGTCCTGACGGTACAATGATGTCTTTTACATCGCCTGAGGCAATT 240
Query 241 CAGGAGCAAATCGTTTCATGCGACTATGAAGGTGCTTCGTTTGATGTGATGAGTTTTGCT 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGGAGCAAATCGTATCATGCGACTATGAAGGTGCTTCGTTTGATGTGATGAGTTTTGCT 300
Query 301 GCTCAGAGTTGCAATACCAGTTCTGAAGATGGAGCATTTATCATGGTTACTGGTTTCTTG 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 GCTCAGAGTTGCAATACTAGTTCTGAAGATGGAGCATTTATCATGGTTACTGGTTTCGTG 360
Query 361 ACTTGTAAAGACAAACAAGTGAGGAGGAGATTTGTTCAATCTTTGTATTTAGCTCGTCGT 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 ACTTGTAAAGACAAACAATTGAGGAGGAGATTTGTTCAATCTTTGTATTTAGCACGTCGT 420
Query 421 CAAGATAGGTCTTATGCCATTGTCAATGATTTCCTCCGCTATATCGATTCAATACCAGCA 480
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 CAAGATAGGTCTTATGCCATTGTCAATGATATCCTCCGCTATATCGATTCAATACCAGCG 480
Query 481 TTACCTTCTGTTCCTGAATCCGCTGGATTTGTCAAGGTTTACTACGAGTTGCCTATGCGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTACCTTCTGTTCCTGAATCCGCTGGATTTGTCAAGGTTTACTACGAGTTGCCTATGCGT 540
Query 541 GAGGAACTTGGTTTGATGTATGTCAATGAAAGTATTATGAGCAGACCGACTTCGACTTCT 600
|||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 541 GAGGAAGTTGGTTTGATGTATGTCACTGAAAGTGTTATGAGCAGACCGACTTCGACTTCT 600
Query 601 GGTAGAACAATGGTCGAGATGCCTGGCCTCGATGCAATCAACAAGAGGGTCTCAAATGAG 660
||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||
Sbjct 601 GGTAGAACAATGGTCGAGATGCCAGGCCTTGACGCAATCAACAAGAGGGTCTCCAATGAG 660
Query 661 CATAAGAGGGCTTCTAATTTTATATTGAATAGTGTGGATTATCAGATCAGCAGATCCTTT 720
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 661 CATAAGAGGGCTTCTAATTTTATATTGAATAGTGTGGATTATCAGATCTGCAGATCTTTT 720
Query 721 AAAGATAGAATGTTTATCATGGTTTGCGGTTTCGTGACTCTAGACGACAAAACAGAGAGA 780
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 AAAGATAGAATGTTTATCATGGTTTGCGGTTTCGTGACTCTGGACGACAAAACAGAGAGG 780
Query 781 AAGTTCTTGCAATTTTTCTATGTGACACGTTGTCACAATGGGTCTTATGTCATCTACAAT 840
||||| |||||||||||||||||| | |||||||| |||||||||||||| |||||||||
Sbjct 781 AAGTTTTTGCAATTTTTCTATGTGGCGCGTTGTCAAAATGGGTCTTATGTTATCTACAAT 840
Query 841 GACATCCTCCGTTATGTTGATGTTACCCCTCGAGACACACTTGAAAGCTCGAGCCAGTCC 900
|||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||
Sbjct 841 GACATCCTCCGTTATGTTGATGTTACTCCTCAAGACACGCTTGAAAGCTTGAGCCAGTCC 900
Query 901 GCTGCAAAACCTAGTACTGATGTCGAGCTTCCTTACTTCATGGTTAAGAAGGGGAAGCTA 960
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 901 GCTGCAAAAACTAGTACTGATGTCGAGCTTCCCTACTTCATGGTTAAGAAGGGGAAGTTA 960
Query 961 CTCTCTTATTTTAACAACATAGACACGCAAAATTACCCCCACTAA 1005
|||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 961 CTCTCTTATTTTAACAACATAGACCCGCAAAATTACTCCCACTAA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5