BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55550.1 Length=2069 Score E Sequences producing significant alignments: (Bits) Value Ahg938492 jgi|Araly1|938492|scaffold_502683.1 3181 0.0 > Ahg938492 jgi|Araly1|938492|scaffold_502683.1 Length=2096 Score = 3181 bits (1722), Expect = 0.0 Identities = 1957/2072 (94%), Gaps = 9/2072 (0%) Strand=Plus/Plus Query 1 GAAAACAATTCTTGATGTCTCAAACCTTTGCTGTCATCTTG-TTACTACTCATCTTCTTA 59 ||||||||||||||||| | || ||||||| | ||||| || ||||||||||||||||| Sbjct 11 GAAAACAATTCTTGATGGCCCAGACCTTTGTTTTCATC-TGCTTACTACTCATCTTCTTG 69 Query 60 ACACACTTAGTTTCATCTCTAATTCAAGACTTCTCCTTCATTGGCTTCAAAAAAGCCTCA 119 |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| Sbjct 70 ACACACTTAGTTTCATCTCTAACTCATGACTTCTCCTTCGTTGGCTTCAAAAAAGCCTCA 129 Query 120 CCAAAT-TTAACGTTAAACGGAGTTGCAGAGATCGCCCCCACTGGAGCAATCAGGCTCAC 178 |||||| ||| | ||| ||||||||||||||| || |||||||||| ||||||||||| Sbjct 130 CCAAATCTTATC-ATAACCGGAGTTGCAGAGATTGCTGCCACTGGAGCCATCAGGCTCAC 188 Query 179 AACAGAGACACAGCGCGTGATTGGTCACGCTTTCTACTCCTTACCAATACGGTTCAAGCC 238 |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 189 AACAGACACACAGCGCGTGATCGGTCATGCTTTCTACTCCTTACCAATCCGGTTCAAGCC 248 Query 239 AATCGGTGTAAACCGAGCTCTGTCTTTCTCCACGTCTTTTGCAATCGCCATGGTTCCAGA 298 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 249 AATCGGTGTAAACCGAGCTCTGTCTTTCTCCACGTCCTTTGCAATCGCCATGGTTCCAGA 308 Query 299 GTTTGTTACTCTTGGTGGCCACGGACTTGCCTTCGCCATCACTCCAACTCCAGATCTCAG 358 ||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 309 GTTTGTTACTCTTGGAGGCCATGGACTTGCCTTTGCAATCACTCCAACTCCAGATCTCAG 368 Query 359 AGGTTCTCTTCCTAGCCAGTACTTAGGCCTGTTGAATTCAAGCAGAGTTAACTTCTCTAG 418 ||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || Sbjct 369 AGGCTCTCTTCCAAGCCAGTACTTAGGCCTTTTGAATTCCAGCAGAGTTAACTTCTCGAG 428 Query 419 CCACTTCTTCGCTGTGGAATTCGATACTGTCAGGGATTTGGAGTTTGAGGACATTAATGA 478 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 429 TCACTTCTTCGCTGTGGAATTCGACACTGTCAGGGATTTGGAGTTTGAGGACATCAATGA 488 Query 479 TAACCATGTAGGAATCGATATAAACAGTATGGAATCGAGTATTTCGACTCCTGCTGGCTA 538 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 489 TAACCATGTAGGAATCGATATAAACAGTATGGAATCGAGTACTTCGACTCCCGCTGGCTA 548 Query 539 TTTCCTCGCTAACTCAACCAAAAAGGAGCTTTTCCTTGATGGTGGTAGAGTGATTCAAGC 598 |||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||| Sbjct 549 TTTCCTCGCTAATTCAACCAAAAAAGAGCTTCTCCTTGACGGTGGTAGAGTGATTCAAGC 608 Query 599 TTGGATTGATTACGATTCAAACAAGAAAAGGTTAGATGTTAAACTTTCTCCATTCTCAGA 658 |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 609 TTGGATTGATTATGATGCAAACAAGAAAAGGTTAGATGTTAAGCTTTCTCCATTCTCAGA 668 Query 659 GAAACCAAAGTTGTCTCTTCTCTCTTACGATGTTGACCTATCCTCTGTTTTGGGAGATGA 718 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 669 GAAACCAAAGTTGTCTCTTCTCTCTTACGATGTTGATCTGTCCTCTGTTTTGGGAGATGA 728 Query 719 AATGTATGTTGGATTCTCTGCTTCCACCGGTTTGCTAGCTAGTTCACATTACATCTTAGG 778 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 729 AATGTATGTTGGATTCTCTGCTTCGACCGGTTTGCTAGCTAGTTCACATTACATCTTAGG 788 Query 779 TTGGAACTTTAACATGAGTGGAGAAGCATTTTCTCTGTCTTTGCCATCTCTTCCTCGGAT 838 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 789 TTGGAACTTTAACATGAGTGGAGAAGCATTTTCTCTGTCTTTGCCATCTCTCCCTCGGAT 848 Query 839 TCCTAGTTCAATCAAGAAGAGGAAGAAGAAGAGACAGAGTTTGATTCTTGGAGTATCTCT 898 ||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||| | Sbjct 849 CCCTGGTTCAATCAAGAAGAAGAAGAAGAAGAGACAGGGTTTGATTCTCGGAGTATCAAT 908 Query 899 CTTGTGTTCCCTTTTGATCTTCGCGGTTCTTGTCGCTGCATCGTTGTTCGTGGTAAGAAA 958 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| Sbjct 909 CTTGTGTTCCCTTTTGATCTTCGCGGTTCTTGTCGCTGCATTGTTGTTCGTAGTAAAAAA 968 Query 959 GGTGAAAGATGAAGACAGAGTTGAAGAATGGGAGCTTGATTTTGGTCCGCATAGATTTTC 1018 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 969 GGCGAAAGATGAAGACAGAGTTGAAGAATGGGAGCTTGATTTTGGCCCGCATAGATTTTC 1028 Query 1019 TTACAGAGAGCTCAAGAAAGCTACTAATGGTTTTGGGGACAAAGAGCTTCTCGGGTCTGG 1078 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1029 TTACAGAGAGCTCAAGAAAGCTACGAATGGTTTTGGGGACAAGGAGCTTCTCGGGTCTGG 1088 Query 1079 CGGGTTTGGTAAAGTATACAAAGGAAAGCTCCCGGGTTCAGACGAATTTGTAGCCGTCAA 1138 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1089 CGGGTTTGGTAAAGTATACAAAGGAAAGCTCGCAGGTTCAGACGAATTTGTAGCCGTCAA 1148 Query 1139 GAGAATCTCTCATGAGTCAAGACAAGGTGTACGAGAATTTATGTCTGAGGTCTCAAGCAT 1198 |||||| ||||| |||||||||||||||||||||||||| |||||||||||||| | ||| Sbjct 1149 GAGAATATCTCACGAGTCAAGACAAGGTGTACGAGAATTCATGTCTGAGGTCTCCACCAT 1208 Query 1199 TGGTCACCTCCGGCATAGGAATCTTGTTCAGTTGCTCGGTTGGTGTCGA-AGGCGGGATG 1257 ||| || ||||||||||||||||||||||||||||| |||||||||||| || || |||| Sbjct 1209 TGGCCATCTCCGGCATAGGAATCTTGTTCAGTTGCTTGGTTGGTGTCGACAG-CGAGATG 1267 Query 1258 ATTTGCTTCTTGTCTATGATTTCATGCCTAATGGAAGCTTAGACATGTACTTGTTCGACG 1317 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1268 ATTTGCTTCTCGTCTATGATTTCATGCCTAATGGAAGCTTAGACATGTACTTGTTCGACG 1327 Query 1318 AAAACCCTGAAGTTATCTTGACTTGGAAGCAAAGATTCAAAATCATAAAAGGGGTTGCTT 1377 |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| | Sbjct 1328 AAAACCCTAAAGTTATATTGACTTGGAAGCAAAGATTCAAAATCTTAAAAGGGGTTGCGT 1387 Query 1378 CCGGTTTACTCTACCTACACGAAGGATGGGAACAAACGGTTATTCACCGCGATATTAAAG 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1388 CCGGTTTACTCTACCTACACGAAGGATGGGAACAAACGGTTATTCACCGCGATATTAAAG 1447 Query 1438 CTGCAAACGTTTTGTTGGACAGCGAAATGAACGGACGGGTAGGAGATTTCGGTCTTGCTA 1497 ||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1448 CTGCAAATGTTCTGTTGGACAGCGAAATGAACGGGCGGGTGGGAGATTTCGGTCTTGCTA 1507 Query 1498 AGTTATATGAGCATGGATCGGATCCGGGGGCTACAAGAGTGGTTGGCACATTTGGGTACT 1557 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1508 AGTTATATGAACATGGATCGGACCCGGGGGCTACAAGAGTGGTTGGCACATTTGGGTACC 1567 Query 1558 TAGCACCAGAACTCACAAAATCCGGAAAACTGACAACAAGCACCGATGTTTATGCGTTTG 1617 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1568 TAGCACCAGAACTCACAAAATCCGGAAAATTGACAACAAGCACCGATGTTTATGCGTTTG 1627 Query 1618 GAGCGGTTTTATTGGAAGTAGCTTGCGGAAGAAGACCTATCGAAACAAGTGCGTTACCAG 1677 ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| Sbjct 1628 GAGCGGTTTTATTGGAAGTAGCTTGCGGAAGAAGACCAATCGAAACAACTGCATTACCAG 1687 Query 1678 AGGAGCTTGTAATGGTTGATTGGGTTTGGTCAAGGTGGCAAAGCGGAGACATTAGAGATG 1737 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1688 AGGAGCTTGTAATGGTTGATTGGGTTTGGTCAAGGTGGCAAAGTGGAGACATTAGAGATG 1747 Query 1738 TTGTGGACAGGAGATTGAACGGTGAGTTTGACGAAGAGGAAGTGGTTATGGTGATCAAAT 1797 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1748 TTGTGGACAGGAGATTGAACGGTGAGTTTGATGAAGAGGAAGTGGTTATGGTGATAAAAT 1807 Query 1798 TAGGGCTTCTATGCTCAAATAATTCACCCGAGGTTCGACCTACAATGAGACAAGTAGTTA 1857 |||||||||| |||||||| ||||| || |||||||||||||||||||||||||| |||| Sbjct 1808 TAGGGCTTCTCTGCTCAAACAATTCGCCAGAGGTTCGACCTACAATGAGACAAGTGGTTA 1867 Query 1858 TGTATCTCGAAAAGCAGTTTCCGTCGCCTGAAGTTGTTCCTGCACCGGATTTTCTAGATG 1917 |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 1868 TGTATCTCGAAAAGCAGTTTCCCTCGCCTGAAGTTGTTCCTGCACCGGATTTTTTAGATG 1927 Query 1918 CAAATGATAGTATGTGTCTTGATGAGCGCAGCGGTAGTGCAGGCGAGTTTGAAGATTTTG 1977 |||||| |||||||| |||||||||||||||||| |||||||||||| || ||||||| Sbjct 1928 CAAATG---GTATGTGTTTTGATGAGCGCAGCGGTAATGCAGGCGAGTTCGAGGATTTTG 1984 Query 1978 TGGATTCAGCTAGGTTTTATAGCGGACCGAATGAAACTACTACTTCGTCGATATTTTCCT 2037 ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| || | Sbjct 1985 TGGATTCAGCTAGGTTTTACAGCGGACCAAATGAAACTACTACTTCGTCGGTATTCTCTT 2044 Query 2038 TCTCCGGTAAAACAAGAACTGATCCAAGATAA 2069 |||||||||||||||||||||||||||||||| Sbjct 2045 TCTCCGGTAAAACAAGAACTGATCCAAGATAA 2076 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77818370535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5