BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55550.1
Length=2069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938492 jgi|Araly1|938492|scaffold_502683.1 3181 0.0
> Ahg938492 jgi|Araly1|938492|scaffold_502683.1
Length=2096
Score = 3181 bits (1722), Expect = 0.0
Identities = 1957/2072 (94%), Gaps = 9/2072 (0%)
Strand=Plus/Plus
Query 1 GAAAACAATTCTTGATGTCTCAAACCTTTGCTGTCATCTTG-TTACTACTCATCTTCTTA 59
||||||||||||||||| | || ||||||| | ||||| || |||||||||||||||||
Sbjct 11 GAAAACAATTCTTGATGGCCCAGACCTTTGTTTTCATC-TGCTTACTACTCATCTTCTTG 69
Query 60 ACACACTTAGTTTCATCTCTAATTCAAGACTTCTCCTTCATTGGCTTCAAAAAAGCCTCA 119
|||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||
Sbjct 70 ACACACTTAGTTTCATCTCTAACTCATGACTTCTCCTTCGTTGGCTTCAAAAAAGCCTCA 129
Query 120 CCAAAT-TTAACGTTAAACGGAGTTGCAGAGATCGCCCCCACTGGAGCAATCAGGCTCAC 178
|||||| ||| | ||| ||||||||||||||| || |||||||||| |||||||||||
Sbjct 130 CCAAATCTTATC-ATAACCGGAGTTGCAGAGATTGCTGCCACTGGAGCCATCAGGCTCAC 188
Query 179 AACAGAGACACAGCGCGTGATTGGTCACGCTTTCTACTCCTTACCAATACGGTTCAAGCC 238
|||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 189 AACAGACACACAGCGCGTGATCGGTCATGCTTTCTACTCCTTACCAATCCGGTTCAAGCC 248
Query 239 AATCGGTGTAAACCGAGCTCTGTCTTTCTCCACGTCTTTTGCAATCGCCATGGTTCCAGA 298
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 249 AATCGGTGTAAACCGAGCTCTGTCTTTCTCCACGTCCTTTGCAATCGCCATGGTTCCAGA 308
Query 299 GTTTGTTACTCTTGGTGGCCACGGACTTGCCTTCGCCATCACTCCAACTCCAGATCTCAG 358
||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 309 GTTTGTTACTCTTGGAGGCCATGGACTTGCCTTTGCAATCACTCCAACTCCAGATCTCAG 368
Query 359 AGGTTCTCTTCCTAGCCAGTACTTAGGCCTGTTGAATTCAAGCAGAGTTAACTTCTCTAG 418
||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 369 AGGCTCTCTTCCAAGCCAGTACTTAGGCCTTTTGAATTCCAGCAGAGTTAACTTCTCGAG 428
Query 419 CCACTTCTTCGCTGTGGAATTCGATACTGTCAGGGATTTGGAGTTTGAGGACATTAATGA 478
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 429 TCACTTCTTCGCTGTGGAATTCGACACTGTCAGGGATTTGGAGTTTGAGGACATCAATGA 488
Query 479 TAACCATGTAGGAATCGATATAAACAGTATGGAATCGAGTATTTCGACTCCTGCTGGCTA 538
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 489 TAACCATGTAGGAATCGATATAAACAGTATGGAATCGAGTACTTCGACTCCCGCTGGCTA 548
Query 539 TTTCCTCGCTAACTCAACCAAAAAGGAGCTTTTCCTTGATGGTGGTAGAGTGATTCAAGC 598
|||||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 549 TTTCCTCGCTAATTCAACCAAAAAAGAGCTTCTCCTTGACGGTGGTAGAGTGATTCAAGC 608
Query 599 TTGGATTGATTACGATTCAAACAAGAAAAGGTTAGATGTTAAACTTTCTCCATTCTCAGA 658
|||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 609 TTGGATTGATTATGATGCAAACAAGAAAAGGTTAGATGTTAAGCTTTCTCCATTCTCAGA 668
Query 659 GAAACCAAAGTTGTCTCTTCTCTCTTACGATGTTGACCTATCCTCTGTTTTGGGAGATGA 718
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 669 GAAACCAAAGTTGTCTCTTCTCTCTTACGATGTTGATCTGTCCTCTGTTTTGGGAGATGA 728
Query 719 AATGTATGTTGGATTCTCTGCTTCCACCGGTTTGCTAGCTAGTTCACATTACATCTTAGG 778
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 729 AATGTATGTTGGATTCTCTGCTTCGACCGGTTTGCTAGCTAGTTCACATTACATCTTAGG 788
Query 779 TTGGAACTTTAACATGAGTGGAGAAGCATTTTCTCTGTCTTTGCCATCTCTTCCTCGGAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 789 TTGGAACTTTAACATGAGTGGAGAAGCATTTTCTCTGTCTTTGCCATCTCTCCCTCGGAT 848
Query 839 TCCTAGTTCAATCAAGAAGAGGAAGAAGAAGAGACAGAGTTTGATTCTTGGAGTATCTCT 898
||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||| |
Sbjct 849 CCCTGGTTCAATCAAGAAGAAGAAGAAGAAGAGACAGGGTTTGATTCTCGGAGTATCAAT 908
Query 899 CTTGTGTTCCCTTTTGATCTTCGCGGTTCTTGTCGCTGCATCGTTGTTCGTGGTAAGAAA 958
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 909 CTTGTGTTCCCTTTTGATCTTCGCGGTTCTTGTCGCTGCATTGTTGTTCGTAGTAAAAAA 968
Query 959 GGTGAAAGATGAAGACAGAGTTGAAGAATGGGAGCTTGATTTTGGTCCGCATAGATTTTC 1018
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 969 GGCGAAAGATGAAGACAGAGTTGAAGAATGGGAGCTTGATTTTGGCCCGCATAGATTTTC 1028
Query 1019 TTACAGAGAGCTCAAGAAAGCTACTAATGGTTTTGGGGACAAAGAGCTTCTCGGGTCTGG 1078
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1029 TTACAGAGAGCTCAAGAAAGCTACGAATGGTTTTGGGGACAAGGAGCTTCTCGGGTCTGG 1088
Query 1079 CGGGTTTGGTAAAGTATACAAAGGAAAGCTCCCGGGTTCAGACGAATTTGTAGCCGTCAA 1138
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1089 CGGGTTTGGTAAAGTATACAAAGGAAAGCTCGCAGGTTCAGACGAATTTGTAGCCGTCAA 1148
Query 1139 GAGAATCTCTCATGAGTCAAGACAAGGTGTACGAGAATTTATGTCTGAGGTCTCAAGCAT 1198
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1149 GAGAATATCTCACGAGTCAAGACAAGGTGTACGAGAATTCATGTCTGAGGTCTCCACCAT 1208
Query 1199 TGGTCACCTCCGGCATAGGAATCTTGTTCAGTTGCTCGGTTGGTGTCGA-AGGCGGGATG 1257
||| || ||||||||||||||||||||||||||||| |||||||||||| || || ||||
Sbjct 1209 TGGCCATCTCCGGCATAGGAATCTTGTTCAGTTGCTTGGTTGGTGTCGACAG-CGAGATG 1267
Query 1258 ATTTGCTTCTTGTCTATGATTTCATGCCTAATGGAAGCTTAGACATGTACTTGTTCGACG 1317
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 ATTTGCTTCTCGTCTATGATTTCATGCCTAATGGAAGCTTAGACATGTACTTGTTCGACG 1327
Query 1318 AAAACCCTGAAGTTATCTTGACTTGGAAGCAAAGATTCAAAATCATAAAAGGGGTTGCTT 1377
|||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1328 AAAACCCTAAAGTTATATTGACTTGGAAGCAAAGATTCAAAATCTTAAAAGGGGTTGCGT 1387
Query 1378 CCGGTTTACTCTACCTACACGAAGGATGGGAACAAACGGTTATTCACCGCGATATTAAAG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 CCGGTTTACTCTACCTACACGAAGGATGGGAACAAACGGTTATTCACCGCGATATTAAAG 1447
Query 1438 CTGCAAACGTTTTGTTGGACAGCGAAATGAACGGACGGGTAGGAGATTTCGGTCTTGCTA 1497
||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1448 CTGCAAATGTTCTGTTGGACAGCGAAATGAACGGGCGGGTGGGAGATTTCGGTCTTGCTA 1507
Query 1498 AGTTATATGAGCATGGATCGGATCCGGGGGCTACAAGAGTGGTTGGCACATTTGGGTACT 1557
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1508 AGTTATATGAACATGGATCGGACCCGGGGGCTACAAGAGTGGTTGGCACATTTGGGTACC 1567
Query 1558 TAGCACCAGAACTCACAAAATCCGGAAAACTGACAACAAGCACCGATGTTTATGCGTTTG 1617
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1568 TAGCACCAGAACTCACAAAATCCGGAAAATTGACAACAAGCACCGATGTTTATGCGTTTG 1627
Query 1618 GAGCGGTTTTATTGGAAGTAGCTTGCGGAAGAAGACCTATCGAAACAAGTGCGTTACCAG 1677
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 1628 GAGCGGTTTTATTGGAAGTAGCTTGCGGAAGAAGACCAATCGAAACAACTGCATTACCAG 1687
Query 1678 AGGAGCTTGTAATGGTTGATTGGGTTTGGTCAAGGTGGCAAAGCGGAGACATTAGAGATG 1737
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1688 AGGAGCTTGTAATGGTTGATTGGGTTTGGTCAAGGTGGCAAAGTGGAGACATTAGAGATG 1747
Query 1738 TTGTGGACAGGAGATTGAACGGTGAGTTTGACGAAGAGGAAGTGGTTATGGTGATCAAAT 1797
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1748 TTGTGGACAGGAGATTGAACGGTGAGTTTGATGAAGAGGAAGTGGTTATGGTGATAAAAT 1807
Query 1798 TAGGGCTTCTATGCTCAAATAATTCACCCGAGGTTCGACCTACAATGAGACAAGTAGTTA 1857
|||||||||| |||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 1808 TAGGGCTTCTCTGCTCAAACAATTCGCCAGAGGTTCGACCTACAATGAGACAAGTGGTTA 1867
Query 1858 TGTATCTCGAAAAGCAGTTTCCGTCGCCTGAAGTTGTTCCTGCACCGGATTTTCTAGATG 1917
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1868 TGTATCTCGAAAAGCAGTTTCCCTCGCCTGAAGTTGTTCCTGCACCGGATTTTTTAGATG 1927
Query 1918 CAAATGATAGTATGTGTCTTGATGAGCGCAGCGGTAGTGCAGGCGAGTTTGAAGATTTTG 1977
|||||| |||||||| |||||||||||||||||| |||||||||||| || |||||||
Sbjct 1928 CAAATG---GTATGTGTTTTGATGAGCGCAGCGGTAATGCAGGCGAGTTCGAGGATTTTG 1984
Query 1978 TGGATTCAGCTAGGTTTTATAGCGGACCGAATGAAACTACTACTTCGTCGATATTTTCCT 2037
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| || |
Sbjct 1985 TGGATTCAGCTAGGTTTTACAGCGGACCAAATGAAACTACTACTTCGTCGGTATTCTCTT 2044
Query 2038 TCTCCGGTAAAACAAGAACTGATCCAAGATAA 2069
||||||||||||||||||||||||||||||||
Sbjct 2045 TCTCCGGTAAAACAAGAACTGATCCAAGATAA 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77818370535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5