BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55566.1

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938495 jgi|Araly1|938495|scaffold_502686.1                        135    4e-32


> Ahg938495 jgi|Araly1|938495|scaffold_502686.1
Length=284

 Score =  135 bits (73),  Expect = 4e-32
 Identities = 89/97 (92%), Gaps = 0/97 (0%)
 Strand=Plus/Plus

Query  1    ATGCTAAAAGGTTCGTTGTTTGCTCATGTGGATTACACTAGTCCCGGTGACAGACCGCCA  60
            ||||||||||| ||| ||||||||||||||||||||| || |||||| |||| ||| |||
Sbjct  156  ATGCTAAAAGGGTCGATGTTTGCTCATGTGGATTACAGTAATCCCGGCGACAAACCACCA  215

Query  61   AAGAGTTGGGGAAGACCACCCCATGCGCCCCAAATCT  97
            |||| ||||||||||||||||||||||||||||||||
Sbjct  216  AAGAATTGGGGAAGACCACCCCATGCGCCCCAAATCT  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2943011841


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5