BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55570.1
Length=330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938496 jgi|Araly1|938496|scaffold_502687.1 520 3e-147
> Ahg938496 jgi|Araly1|938496|scaffold_502687.1
Length=461
Score = 520 bits (281), Expect = 3e-147
Identities = 303/314 (96%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 17 ATGTTCATGCGTTTAACAAAGGCAATGAAGAAGTATATATGGATGTTGAAAATGGCAAGA 76
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 127 ATGTTCATGCGTTTAACAAAGGCAATGAAGAAGTATATATGGATGTCCAAAATGGCAAGA 186
Query 77 ACGGTGAAGGGAGTGTGTTTCGCATGCCTCTTCATTACCCAAGATACTCCAAAGAAGATT 136
||||||||| |||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 187 ACGGTGAAGCGAGTGTGTTTCGAATGCCTCTTCATTACCCAAGATACTCTAAAAAAGATT 246
Query 137 ACCAAGACATGCCAGAGTGGAAGCTCGACAGGGTTTTAGCAGATTACGGTTTGTCTACTT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACCAAGACATGCCAGAGTGGAAGCTCGACAGGGTTTTAGCAGATTACGGTTTGTCTACTT 306
Query 197 ATGGTGACTTGGCTCATAAGCGTGACTTTGCTATTGGAGCTTTTCTCTGGATTTCAACTC 256
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 307 ATGGTGACTTGGCTCACAAGCGAGACTTTGCTATTGGAGCTTTTCTCTGGATTTCAACTC 366
Query 257 GTAATCCAAAGCTTTATCAAGAAAAGTCCATCAACTCCAAACTGAAGAAAGATACAAAAT 316
|||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 367 GTAATCCAAAGCTTTATCAAGACAAGTCCATCAACTCCAAACCGACGAAAGATACAAAAT 426
Query 317 CAGCTCATGCATAA 330
||||||||||||||
Sbjct 427 CAGCTCATGCATAA 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11675610234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5