BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55590.1

Length=1162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938499 jgi|Araly1|938499|scaffold_502690.1                        472    4e-132


> Ahg938499 jgi|Araly1|938499|scaffold_502690.1
Length=358

 Score =  472 bits (255),  Expect = 4e-132
 Identities = 311/337 (92%), Gaps = 8/337 (2%)
 Strand=Plus/Plus

Query  48   GAAGTTAGTAGTGCATCAAGATGAAAGCTCTTATTCTTGTTGGAGGTTTTGGCACTCGCT  107
            |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1    GAAGTTTGTGGTGCATCAAGATGAAAGCTCTTATTCTAGTTGGAGGTTTTGGCACTCGCT  60

Query  108  TGAGACCATTGACTCTCAGTCTCCCAAAGCCGCTTGTCGATTTCGCTAATAAACCTATG-  166
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||  
Sbjct  61   TGAGACCATTGACTCTCAGTTTCCCAAAGCCGCTTGTTGATTTCGCTAATAAACCTATAT  120

Query  167  AT--TC-TACATCAGATAGAGGCACTAAAGGCAATTGGAGTGGATGAAGTCGTCTTGGCC  223
            ||  || |||||||||  | | |||| |||||||||||||| |||||||| || ||||||
Sbjct  121  ATGATCCTACATCAGA--G-G-CACTTAAGGCAATTGGAGTCGATGAAGTTGTTTTGGCC  176

Query  224  ATTAACTACGAGCCAGAGCAACTGCTAGTGATGTCCAAATTCTCAAACGACGTTGAGGCA  283
            |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct  177  ATTAACTATGAGCCAGAGCAACTGCTAGTGATGTCGAAATTCTCAAAGGACGTTGAGACA  236

Query  284  ACTCTCGGGATCAAGATCACCTGCTCACAAGAGACTGAGCCTTTAGGTACAGCTGGTCCT  343
            | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  237  AATCTCGGGATAAAGATCACCTGCTCACAAGAGACAGAGCCTTTAGGTACAGCTGGTCCT  296

Query  344  TTGGCTTTAGCCAGGGACAAACTGGTTGATGGCTCTG  380
            ||||||||||| |||||||||||||||||||||||||
Sbjct  297  TTGGCTTTAGCGAGGGACAAACTGGTTGATGGCTCTG  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43345756629


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5