BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55605.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324082 jgi|Araly1|324082|fgenesh1_pm.C_scaffold_5001626 1253 0.0
> Ahg324082 jgi|Araly1|324082|fgenesh1_pm.C_scaffold_5001626
Length=1422
Score = 1253 bits (678), Expect = 0.0
Identities = 725/748 (97%), Gaps = 2/748 (0%)
Strand=Plus/Plus
Query 79 GCTTCTACTTTAGCTTCCGTGTGTGGTCGTGTGGCTCGAGCTCAAGCCGTCTCCGCT-AT 137
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||
Sbjct 676 GCTTCTACTTTAGCTTCCGTGTGTGGTCGTGTGGCTCGAGCTCAGGCGGTCTCCG-TCAT 734
Query 138 CGTTAATCGCTCGTCTCTTGTTCCCAAGCCATCTCTGCTTCGGCCCTTCGTCTCTCGTGG 197
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 735 CGTTAATCGCTCGTCTCTTGTTCCCAAGCCATCTCTGCTTCGTCCTTTCGTCTCTCGCGG 794
Query 198 CTTTCCTTATTCGACGGCCACTGAGCCGTTAAAGTCCGATCAGACGCTTATACAAGTGAT 257
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 795 CTTTCCTTACTCGACGGCCACTGAGCCGTTAAAGTCCGATCAGACGCTTCTACAAGTGAT 854
Query 258 TGACTCTGAGATCAAGGATTCTTTCGAAGCAGATGATCACGATGCGGATGAAGAGACGAT 317
||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 855 TGACTCTGAGATCAACGATTCTTTCGAAGCCGATGATCGCGATGCGGATGAAGAGACCAT 914
Query 318 AGACTCTAGTGACTTTCCTTTCAAAATCGAAGATAATCCTGGACACAGGACTGTGACATT 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 915 AGACTCTAGTGACTTTCCTTTCAAAATCGAAGATAATCCTGGACACAGGACTGTGAAATT 974
Query 378 GACTAGAGAATACAATGGAGAGCAGATTAAAGTAGAAGTAAGCATGCCTGGTCTTGCCAT 437
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 975 GACTAGAGAATACAATGGGGAACAGATTAAAGTAGAAGTAAGCATGCCTGGTCTTGCCAT 1034
Query 438 GGATGAAAATGAAGATGATGTGGATGACGATGAAGATGGTGATGGTCGTCATGAGAAATC 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1035 GGATGAAAATGAAGATGATGTGGATGACGATGAAGATGGTGATGGTCGTCATGAGAAAGC 1094
Query 498 GAATGAATCAAGCATTCCACTTGTTGTCACTGTGACCAAGAAGAGTGGACTTAGCCTAGA 557
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1095 GAATGAATCAAGCATTCCACTTGTTGTCTCTGTGACCAAGAAGAGTGGACTCAGCCTAGA 1154
Query 558 GTTTAGCTGCACTGCTTTCCCTGATGAGATTGTCATTGATGGTTTGTCTGTGAACCGTCC 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GTTTAGCTGCACTGCTTTCCCTGATGAGATTGTCATTGATGGTTTGTCTGTGAACCGTCC 1214
Query 618 AGATGATTCTTCTGAAGAACAGTTGACTTATGATGGGCCAGATTTTCAGGAGTTGGATGA 677
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 AGAGGATTCTTCTCAAGAACAGTTGACTTATGATGGGCCAGATTTTCAGGAGTTGGATGA 1274
Query 678 GAATATGCGCAAGTCGTTCCACAAGTTTCTAGAGACGAGAGGAATCAAAGCAAGCGCAAC 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GAATATGCGCAAGTCGTTCCACAAGTTTCTAGAGACGAGAGGAATCAAAGCAAGCGCAAC 1334
Query 738 GGATTTCTTGTATGAGTACATGATGAAGAAAGATAGCAGAGAGTACTTACTATGGTTGAA 797
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1335 GGATTTCTTGTATGAGTATATGATGAAGAAAGATAGCAGAGAGTATTTACTATGGTTGAA 1394
Query 798 GAAGCTCAAAACCTTTGTCCAAGAATGA 825
||||||||||||||||||||||||||||
Sbjct 1395 GAAGCTCAAAACCTTTGTCCAAGAATGA 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5