BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55620.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938504 jgi|Araly1|938504|scaffold_502695.1 1306 0.0
Ahg319113 jgi|Araly1|319113|fgenesh1_pm.C_scaffold_3002129 497 5e-140
> Ahg938504 jgi|Araly1|938504|scaffold_502695.1
Length=782
Score = 1306 bits (707), Expect = 0.0
Identities = 757/782 (97%), Gaps = 0/782 (0%)
Strand=Plus/Plus
Query 133 GTGTACGTTAGCCTCCTCCCTCTAATGGCGACTCGTCTTCAGTTTGAGAACAACTGCGAA 192
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GTGTACGTTAGCCTCCTCTCTCTAATGGCGACTCGTCTTCAGTTTGAGAACAACTGTGAA 60
Query 193 GTTGGTGTCTTTTCCAAACTCACTAATGCCTATTGCTTAGTCGCTATAGGAGGCTCTGAG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGGTGTCTTTTCCAAACTCACTAATGCCTATTGCTTAGTCGCTATAGGAGGCTCTGAG 120
Query 253 AACTTTTACAGTGCTTTTGAGTCGGAGTTAGCAGATGTTATCCCTATTGTTAAGACCTCT 312
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 AACTTTTACAGTGCTTTTGAGTCGGAGTTGGCAGATGTTATCCCTATCGTTAAGACCTCT 180
Query 313 ATTGGAGGAACACGAATTATTGGGCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTTGTA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGGAGGAACACGAATTATTGGGCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTTGTA 240
Query 373 CCTCATACAACAACTGACCAAGAGCTTCAACACTTAAGGAACAGTCTACCTGATCAAGTT 432
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CCTCATACAACTACTGATCAAGAGCTTCAACACTTGAGGAACAGTCTACCTGATCAAGTT 300
Query 433 GTGGTCCAGCGAATTGATGAACGTCTGTCTGCTCTTGGAAATTGCATTGCCTGCAATGAC 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGTCCAGCGAATTGATGAACGTCTGTCTGCTCTTGGAAATTGCATTGCCTGCAATGAC 360
Query 493 TATGTAGCTCTTGCCCACACCGATCTTGATAAGGAAACCGAGGAAATAATAGCGGATGTA 552
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 CATGTCGCTCTTGCCCACACTGATCTTGATAAGGAAACCGAGGAAATAATAGCGGATGTT 420
Query 553 CTTGGCGTTGAAGTTTTCCGTCAGACAATTGCAGGCAACATTCTCGTGGGCAGTTACTGT 612
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 CTTGGCGTTGAAGTTTTCCGTCAGACAATTGCGGGCAACATTCTCGTGGGCAGTTACTGT 480
Query 613 GCCCTATCCAACAAAGGTGGAATGGTCCATCCTCACACCTCAGTGGAAGACTTGGAAGAA 672
|||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 481 GCCCTATCAAACAGAGGTGGAATGGTCCATCCTCACACCTCCGTGGAAGACTTGGATGAA 540
Query 673 CTCTCAACACTTCTTCAAGTCCCTCTCGTTGCAGGAACCGTGAACCGTGGTAGTGAAGTT 732
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 541 CTCTCAACACTTCTTCAGGTCCCTCTTGTTGCAGGAACCGTAAACCGTGGTAGTGAAGTT 600
Query 733 ATCGCTGCGGGTATGACCGTTAATGATTGGACCTCTTTCTGCGGTTCAGACACAACTGCG 792
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 ATAGCTGCGGGTATGACTGTTAATGATTGGACCTCTTTCTGCGGTTCAGACACAACCGCG 660
Query 793 ACTGAGCTCTCTGTCATAGACAGCATCTTCAAGCTAAGGGAAGCCCAACCCAGCTCTATC 852
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 ACAGAGCTCTCTGTTATAGACAGCATCTTCAAGCTAAGGGAAGCCCAGCCCAGCTCTATC 720
Query 853 GTCGATGAGATGAGGAAGTCATTGATCGATACCTATGTTTAAATTTTGTTTGTTTGGATG 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTCGATGAGATGAGGAAGTCATTGATCGATACCTATGTTTAAATTTTGTTTGTTTGGATG 780
Query 913 AC 914
||
Sbjct 781 AC 782
> Ahg319113 jgi|Araly1|319113|fgenesh1_pm.C_scaffold_3002129
Length=615
Score = 497 bits (269), Expect = 5e-140
Identities = 467/554 (84%), Gaps = 48/554 (9%)
Strand=Plus/Plus
Query 157 ATGGCGACTCGTCTTCAGTTTGAGAACA-A-CTGCGA-AGTTGGTGTCTTTTCCAAACTC 213
||||| |||||||||| ||||||||||| | || || | |||||||||| |||||||||
Sbjct 1 ATGGCAACTCGTCTTCGGTTTGAGAACAGACCT--GACA-TTGGTGTCTTCTCCAAACTC 57
Query 214 ACTAATGCCTATTGCTTAGTCGCTATAGGAGGCTCTGAGAACTTTTACAGTGCTTTTGAG 273
||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 58 ACTAATGCCTATTGCTTAGTCGCTATAGGTGGCTCTGAGAACTTTTACA--GC-----A- 109
Query 274 TCGGAGTTAGCAGATGTTATCCCTATTGTTAAGACCTCTATTGGAGGAACACGAATTATT 333
| | | || |||||||||||||||||||||| |||||||| |||| || || |
Sbjct 110 -C--A--T-GC--ATGTTATCCCTATTGTTAAGACATCTATTGGTGGAATAC-AA--A-- 156
Query 334 GGGCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTTGTACCTCATACAACAACTGACCAA 393
||||||| |||||||||||||| ||||||||||| ||||||| |
Sbjct 157 ----------------GAAACAAAAATGGGCTTCTTGTGCCTCATACAACCACTGACC-A 199
Query 394 GAGCTTCAACACTTAAGGAACAGTCTACCTGATCAAGTTGTGGTCCAGCGAATTGATGAA 453
||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 200 -AGCTTCAACACTTGAGGAACAGTCTACCTGATCAAGTTGTGGTCCAGAGAATCGATGAA 258
Query 454 CGTCTGTCTGCTCTTGGAAATTGCATTGCCTGCAATGACTATGTAGCTCTTGCCCACACC 513
||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 259 CGTCTCTCTGCTCTTGGAAATTGCATTGCCTGCAATGACCATGTTGCTCTTGCGCACACT 318
Query 514 GATCTTGATAAGGAAACCGAGGAAATAATA---GCGGATGTACTTGGCGTTGAAGTTTTC 570
|||||||| |||||||| |||||||||||| || ||||| ||||| ||||||||||||
Sbjct 319 GATCTTGACAAGGAAACTGAGGAAATAATAATAGCCGATGTTCTTGGTGTTGAAGTTTTC 378
Query 571 CGTCAGACAATTGCAGGCAACATTCTCGTGGGCAGTTACTGTGCCCTATCCAACAAAGGT 630
|||||||||||||||||||| ||||| || ||||| || |||||| | ||||||| |||
Sbjct 379 CGTCAGACAATTGCAGGCAATATTCTTGTAGGCAGCTATTGTGCCTTGTCCAACACCGGT 438
Query 631 GGAATGGTCCATCCTCACACCTCAGTGGAAGACTTGGAAGAACTCTCAACACTTCTTCAA 690
||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 439 GGAATTGTCCATCCTCAAACCTCAGTGGAAGATTTGGATCAACTCTCAACACTTGTTCAA 498
Query 691 GTCCCTCTCGTTGC 704
|||||||| |||||
Sbjct 499 GTCCCTCTGGTTGC 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5