BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55640.1
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938506 jgi|Araly1|938506|scaffold_502697.1 1688 0.0
> Ahg938506 jgi|Araly1|938506|scaffold_502697.1
Length=1040
Score = 1688 bits (914), Expect = 0.0
Identities = 999/1041 (96%), Gaps = 1/1041 (0%)
Strand=Plus/Plus
Query 194 TTTGGATTTTTGGGCGGCAAAAATGGTGATGCAGACGGAAGCTAGGGTTGGTGTGAGCTC 253
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTTGGATTTTTGGGCGGC-AAAATGGTGATGCAGACGGAGGCTAGGGTTGGTGTGAGCTC 59
Query 254 AGGACATGGCGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGA 313
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGGGCATGACGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGA 119
Query 314 ATCGGCGTCGCAGCTCTTAGCCGGAGGACTCGCTGGTGCTTTTAGCAAGACTTGTACTGC 373
|||||| || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 120 ATCGGCTTCTCAGCTCTTAGCCGGAGGACTCGCCGGTGCTTTCAGCAAGACTTGCACTGC 179
Query 374 TCCTCTATCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGCAGC 433
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 TCCTCTCTCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGAAGC 239
Query 434 TTTAAGAAAGCCAAGCATATTACACGAGGCTTCACGGATATTGAATGAAGAAGGATTGAA 493
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 TCTAAGAAAGCCAAGCATATTACACGAGGCGTCACGGATATTGAATGAAGAAGGATTGAA 299
Query 494 AGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTTAA 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTCAA 359
Query 554 TTTCTACGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCA 613
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTCTGCGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCA 419
Query 614 CAAGGAGGGTATAAGTTCAAACCTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAAT 673
||||| | ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 CAAGGCGAGTATAAGCTCAAACGTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAAT 479
Query 674 CACAGCTGCTTCTGCCACTTATCCACTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGAC 733
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 CACAGCTGCTTCTGCCACTTATCCGCTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGAC 539
Query 734 AAAAGTAATCTACTACTCGGGTATCTGGCATACTCTGCGCTCTATTACAACCGATGAAGG 793
|||||||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 540 AAAAGTAATCTACTACACGGGTATCTGGCATACTCTGCGCACTATTACTAGAGATGAAGG 599
Query 794 TATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGC 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGC 659
Query 854 CATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGA 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGA 719
Query 914 TTCCCCTATCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGC 973
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTCCCCTGTCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGC 779
Query 974 TACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTGGAAGGAATAGGCGGGCGAGC 1033
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTAGAAGGAATAGGCGGGCGAGC 839
Query 1034 GGTAGTGTACAAGACAGGTTTGTTAGGCACATTAAAGCGTATTGTTCAAACGGAAGGAGC 1093
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 840 GGTAGTGTACAAGACAGGATTGTTAGGCACATTAAAGCGTATAGTTCAGACGGAAGGAGC 899
Query 1094 GAGAGGCCTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTAGGGAT 1153
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 AAGAGGTTTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTTGGGAT 959
Query 1154 TTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAGGATCTTTCTTCGAATCTATA 1213
||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||
Sbjct 960 TTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAAGATCTTTCCTCAAAGCTATA 1019
Query 1214 ACGGTTTAAAAGGTTGGTAGA 1234
|||||||||| |||| ||||
Sbjct 1020 ACGGTTTAAACTGTTGATAGA 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5