BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55646.1
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485995 jgi|Araly1|485995|fgenesh2_kg.5__1987__AT3G55646.1 1114 0.0
> Ahg485995 jgi|Araly1|485995|fgenesh2_kg.5__1987__AT3G55646.1
Length=916
Score = 1114 bits (603), Expect = 0.0
Identities = 864/977 (88%), Gaps = 69/977 (7%)
Strand=Plus/Plus
Query 17 ATCTTCACGTGTCTTCTCTTTTGTTTCATCACATGTTCTCTCCTTTCTTCACCTCTCTCT 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCACGTGTCTTCTCTTTTGTTTCATCACATGTTCTCTCCTTTCTTCACCTCTCTCT 60
Query 77 ACAAATTTAATCCTTTCTCTTTTCGGCATC-CCTAGGCCCCTTTGGCCTTTTCTTAAATA 135
||||||||||||||||||||||||||| | |||||| | ||||||||| |||
Sbjct 61 GCAAATTTAATCCTTTCTCTTTTCGGCA-CTCCTAGG---C-----CCTTTTCTTTAATT 111
Query 136 CATCTCTCAGAAA-CAAAAAGTTTGTATACATACATTTCCACCTACAC-ATCTTTGGCAT 193
||||| ||| ||| |||||||||| ||| |||||||| |||| |||| || ||||| ||
Sbjct 112 CATCTTTCA-AAACCAAAAAGTTT-AATATATACATTTTCACCAACACAAT-TTTGGGAT 168
Query 194 GGACAAGAACAAGAACAAGAAAAAGATTGTTTCCGCTTCATCTTCGTCCTCATCTCTTTC 253
||||||||||||| ||||| ||||||||||||| | | ||| ||||||
Sbjct 169 GGACAAGAACAAG---AAGAAGAAGATTGTTTCCG---------C-T--TCA--TCTTTC 211
Query 254 GTCATTCGATCATATATTTGGGCCAAGAGTCTCTTCTTCGTCTTCTTCATCGGCCACTGG 313
| | || || || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 G--A-TC-AT-AT-T-TTTGGGCCAAGAGTCTCTTCTTCGTCTTCTTCATCGGCCACTGG 264
Query 314 ATTGTTCAAATCCATCTTCCCACCACCCTCTGCAGATCAGTTGGGGAGGCAAGTGGACTT 373
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 265 ATTGTTCAAATCCATCTTCCCACCACCCTCTGCGGATCAGTTGGGGAGGCAAGTGGACTT 324
Query 374 TGCAAGTCAAGGTGGACATGTGAAGTATCAATCTCCAAATGCGAAAGGAGAAAGAAGCAA 433
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 325 TGCAAGTCAAGGTGGACATGTGAAGTATCAATCTCCAAATGAGAGAGGAGAAAGAAGCAA 384
Query 434 TAAAAAGGAGAAAAAGAGTTACTATAATGAGGAAACAGAACCACCATGCCACTTGAGCTC 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CAAAAAGGAGAAAAAGAGTTACTATAATGAGGAAACAGAACCACCATGCCACTTGAGCTC 444
Query 494 ATCCCTTTACTATGGAGGCCAAGAGACTTATTCCTCAACAACGACTACCACCCATGATAC 553
||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 445 ATCACTTTACTATGGAGGCCAAGAGAAATATTCCTCCACAACGACTACCACCCATGATAC 504
Query 554 T--T-ACAAAAAGGATGGAGAGGAAGGCGATTCCAAACGCGCATCAAGAGGAAACTGGTG 610
| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 505 TACTTACAAAAAAGATGGAGAGGAAGGCGATTCCAAAAGCGCATCAAGAGGAAACTGGTG 564
Query 611 GGAAGGTTCGCTTTATTACTAGCAATCCTGGTTTACGAGCACCTGTTAAGGTGCATGCAT 670
|||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||
Sbjct 565 GGAAGGGTCGCTTTATTACTAGCAATCCTGATTTAGGAGCACCTGTTAAGGTACATGCAT 624
Query 671 GGTCTTATCTTTATACGAAATCTGAAGGGTCGCTAGATA-ATAAAAAGAAAGCAAAATTT 729
||||||||||||||| ||||| |||||||||||||| || |||| || |||| |||||
Sbjct 625 GGTCTTATCTTTATATGAAATTTGAAGGGTCGCTAGCTATATAATAA-AAAG-AAAAT-- 680
Query 730 CCAAATGTCCTTAATTACAAATTTAAA-AGAGTTTAGTATATTGTCTAAAAGAAGAGGGG 788
||| | | | | | ||| | | | || | |||||||||||||||||||||||
Sbjct 681 --AAA---C-T-A-T-ATAAAGGTCCTTA-A-TT-A-TATATTGTCTAAAAGAAGAGGGG 727
Query 789 CTTGTTCTTTACATGTTGATTCATTTTGTTTAACGACAAATGCAAACAACACGAAGAGAA 848
||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct 728 CTTGTTCTTCACATGTTGATTCATTTTGTTTA-CGACAAATGCAA-CAACACTAAGAGAA 785
Query 849 GTCTCTTCCTGATGAAATTAATGTTTGGCTCCTTTTTAGTCAATTAATGTTTGTCTAATA 908
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 786 GTCTCTTCCTGATGAAATTAATGTTTGGCTCCTTTTTCGTCAATTAATGTTTGTCTAATA 845
Query 909 GTGTATGTAAGGGAAAAAATGATATGTATAACAGTGTCTACTACAATGTACTTAGCTTAC 968
|||| ||||||| |||||||||| ||||||| || ||||| | |||||| ||||||
Sbjct 846 GTGTTTGTAAGGAAAAAAATGATGTGTATAATAGAGTCTA-T-----GTACTTGGCTTAC 899
Query 969 TTTAATAAATAATGGAT 985
|||||| ||||||||||
Sbjct 900 TTTAATGAATAATGGAT 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38008548249
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5