BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55650.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898522 jgi|Araly1|898522|Al_scaffold_0005_2488 2327 0.0
Ahg898505 jgi|Araly1|898505|Al_scaffold_0005_2471 2316 0.0
Ahg340564 jgi|Araly1|340564|fgenesh1_pg.C_scaffold_3000327 1550 0.0
> Ahg898522 jgi|Araly1|898522|Al_scaffold_0005_2488
Length=1533
Score = 2327 bits (1260), Expect = 0.0
Identities = 1444/1535 (94%), Gaps = 4/1535 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATGTTACTTGGTGGACAAGCAACCAATGGAGCTCTTCGTTCAAAGACGAAGATA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATGTTACTTGGTGGACAAGCAACCAATGGAGCTCTTCGTTCAAAGACGAAGATT 60
Query 61 ATTTGTACTCTTGGACCGGTTTCAAGATCGGTGGAGATGATTGAGAAGCTTCTCAAGGCT 120
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GTTTGTACTCTTGGACCGGCTTCAAGATCGGTGGTGATGATTGAGAAGCTTCTCAAGGCT 120
Query 121 GGTATGAACGTAGCCCGGTTCAATTTCTCTCATGGTTCTCACTCTTACCATCAAGAAACT 180
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GGTATGAACGTAGCCAGGTTCAATTTCTCCCATGGTTCTCACTCTTACCATCAAGAAACT 180
Query 181 CTCGATAATCTCCGAACCGCCATGGACAACACTGGTATTCTCTCCGCCGTCATGCTCGAC 240
|||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 181 CTCGATAATCTCAGAACCGCCATGGCCAACACTGGAATTCTCTGCGCCGTCATGCTCGAC 240
Query 241 ACAAAGGGTCCTGAGATACGAACCGGGTTTCTCAAAGAAGGCAAACCGATACAGCTAAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAAAGGGTCCTGAGATACGAACCGGGTTTCTCAAAGAAGGCAAACCGATACAGCTAAAC 300
Query 301 CAAGGTCAAGAGATCACCATCTCAATTGATTACATGATAGAAGGAGATTCAAACGTTATC 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 301 CAAGGTCAAGAGATCACCATCTCAATTGATTACACAATAGAAGGAGATTCAAACACTATC 360
Query 361 TCCATGAGCTACAAGAAACTTGCAGAAGACGTCAAACCTGGTGATGTGATTCTCTGTTCA 420
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||
Sbjct 361 TCCATGAGCTACAAGAAACTTGCAGAGGACCTCAAACCTGGCGATGTGATTCTTTGTTCA 420
Query 421 GACGGCACAATCTCTTTAACTGTCTTGTCCTGTGACAAGTCTTTCGGTCTTGTTCGTTGC 480
|||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 421 GACGGCACAATCTCACTAACTGTCTTGTCCTGTGACAAGTATCTCGGTCTTGTTCGTTGC 480
Query 481 CGTTGCGAGAACTCTGCAATTCTAGGAGAAAGAAAAAACGTTAATCTTCCTGGAATTGTA 540
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 481 CGTTGCGAGAACTCTGCAATTCTTGGAGAAAGAAAGAACGTTAATCTTCCTGGAATTGTA 540
Query 541 GTTGATCTCCCAACACTTACTGAGAAAGATAAAGAAGATATCATCCAATGGGGAGTTCCG 600
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 541 GTTGATCTCCCAACACTTACCGAGAAAGATAAAGAAGATATTATGCAATGGGGAGTTCCG 600
Query 601 AACAAAATCGACATCATCGCTCTTTCTTTTGTTCGTAAAGGATCTGACCTAA-CTGAAGT 659
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 601 AACAAAATCGACATAATCGCTCTTTCTTTTGTTCGTAAAGGATCTGACCTAATC-GAAGT 659
Query 660 TAGGAGGTTACTTGGAGAACACTCAAAGAACATCATGCTCATGTCAAAGGTGGAGAATCA 719
||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 TAGGAAGTTACTTGGAGAGCACTCAAAGAACATCATGCTTATGTCAAAGGTGGAGAATCA 719
Query 720 AGAAGGGGTCATGAATTGTGAAAAGATTCTGGAGAATTCTGATGCTTTCATGGTGGCTAG 779
||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGAAGGGGTGATGAATTTTGATAAGATTCTGGAGAATTCTGATGCTTTCATGGTGGCTAG 779
Query 780 AGGAGATCTTGGAATGGAGATTCCGATCGAAAAGATGTTCCTTGCTCAGAAAACAATGAT 839
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 780 AGGAGATCTTGGGATGGAGATTCCAATCGAAAAGATGTTTCTTGCTCAGAAAACAATGAT 839
Query 840 CAAGATGGCTAATGCTCTTGGGAAACCAGTTGTCACAGCCACACAGATGCTTGAATCCAT 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CAAGATGGCTAATGCTCTTGGGAAACCAGTTGTCACAGCTACACAGATGCTTGAATCCAT 899
Query 900 GACAGTATCTCCTCGTCCGACTAGAGCTGAAGCCACTGACGTTGCAAACGCTGTTCTTGA 959
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 900 GACAGTATCTCCTCGTCCGACTAGAGCTGAAGCAACTGACGTTGCAAACGCAGTTCTTGA 959
Query 960 CGGGACAGACTGCGTTATGCTTAGTGGAGAAACCGCTGCTGGAGCTCACCCTGAGGCTGC 1019
|||||| || || ||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 960 CGGGACTGATTGTGTTATGCTTAGCGGAGAAACCGCTGCTGGAGCTCACCCTGAGACAGC 1019
Query 1020 CGTGCTAACAATGTCAAGGATCTGTAAAGAAGCAGAGGATTTCATCGATTACGACATTCT 1079
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1020 CGTGCTAACAATGTCAAGGATCTGTAAAGAAGCAGAGAATTTCATCGATTACGACGTTCT 1079
Query 1080 CCACAAGAAAACCCTAGGAATGGTTTCGTTACCGTTATCTCCGATCGAGAGCTTAGCTGC 1139
||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1080 CCACAAGAATACCCGAGGAATGGTTTCATTACCGTTATCCCCGATCGAGAGCTTAGCTGC 1139
Query 1140 TTCAGTTGTTTCGACGGCACAGAGTGTTTTTGCGTCGGCGATCGTTGTTCTCACCAAAGG 1199
||||| |||||| || |||| ||||||||||||| | |||||||| || ||||| || ||
Sbjct 1140 TTCAGCTGTTTCTACCGCACGGAGTGTTTTTGCGACAGCGATCGTCGTCCTCACTAAGGG 1199
Query 1200 CGGTTACACGGCGGAGCTTGTGGCTAAATACAGGCCGAGCGTTCCGATTTTGTCAGTGAT 1259
||| ||||| || |||||||||||||||||| | || |||||||| ||||||||||||||
Sbjct 1200 CGGATACACCGCAGAGCTTGTGGCTAAATACCGTCCCAGCGTTCCAATTTTGTCAGTGAT 1259
Query 1260 TGTGCCAGAGATTGCTCAAGGGAATGATATGGAGATGTCGTGCTCAGACTCGGTGGCTCA 1319
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1260 TGTGCCGGAGATTGCTCAAGGGAATGATATTGAGTTGTCGTGCTCAGACTCGGTGGCTCA 1319
Query 1320 TGCGGCGAGACGTGGTTTGATTTACCGTAGGATTATTCCGGTGGTGGCGACGGGATCTTC 1379
|| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1320 TGTGGCGAGACGTAGTTTGATTTACCGTGGGATTATTCCGGTGGTGGCGACGGGATCTTC 1379
Query 1380 GGCTAGGGATTCAAACAAAGATGCAACGGAGGAGATGATTA-ATTTGGCTATCGGATTCG 1438
||||| ||||||||||| || ||||||||||||||||||| ||| | ||||||||||||
Sbjct 1380 AGCTAGAGATTCAAACAACGAAGCAACGGAGGAGATGATTAGATTCG-CTATCGGATTCG 1438
Query 1439 CGAAGACGAAGGGAATTTGCAAGAATGGAGATTCGATTGTGGCGTTGCACAAGATTGATG 1498
|||||| |||||||||||| |||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1439 CGAAGATGAAGGGAATTTGTAAGACTGGAGATTCCATTGTGGCTTTGCACAAGATTGATG 1498
Query 1499 GTTCCTCTGTTGTTAAGATAGTGACCGTGGAGTAA 1533
||||||||||||| |||||||||||||| ||||||
Sbjct 1499 GTTCCTCTGTTGTGAAGATAGTGACCGTCGAGTAA 1533
> Ahg898505 jgi|Araly1|898505|Al_scaffold_0005_2471
Length=1533
Score = 2316 bits (1254), Expect = 0.0
Identities = 1444/1537 (94%), Gaps = 8/1537 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATGTTACTTGGTGGACAAGCAACCAATGGAGCTCTT-CGTTCAAAGACGAAGAT 59
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1 ATGGAGATGTTACTTGGTGGACAAGCAACCAATGGAGCTCTTAAG-TCAAAGACGAAGAT 59
Query 60 AATTTGTACTCTTGGACCGGTTTCAAGATCGGTGGAGATGATTGAGAAGCTTCTCAAGGC 119
| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 60 AGTTTGTACTCTTGGACCGGCTTCAAGATCGGTGGTGATGATTGAGAAGCTTCTCAAGGC 119
Query 120 TGGTATGAACGTAGCCCGGTTCAATTTCTCTCATGGTTCTCACTCTTACCATCAAGAAAC 179
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TGGTATGAACGTAGCCAGGTTCAATTTCTCCCATGGTTCTCACTCTTACCATCAAGAAAC 179
Query 180 TCTCGATAATCTCCGAACCGCCATGGACAACACTGGTATTCTCTCCGCCGTCATGCTCGA 239
||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 180 TCTCGATAATCTCAGAACCGCCATGGCCAACACTGGAATTCTCTGCGCCGTCATGCTCGA 239
Query 240 CACAAAGGGTCCTGAGATACGAACCGGGTTTCTCAAAGAAGGCAAACCGATACAGCTAAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CACAAAGGGTCCTGAGATACGAACCGGGTTTCTCAAAGAAGGCAAACCGATACAGCTAAA 299
Query 300 CCAAGGTCAAGAGATCACCATCTCAATTGATTACATGATAGAAGGAGATTCAAACGTTAT 359
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 300 CCAAGGTCAAGAGATCACCATCTCAATTGATTACACAATAGAAGGAGATTCAAACACTAT 359
Query 360 CTCCATGAGCTACAAGAAACTTGCAGAAGACGTCAAACCTGGTGATGTGATTCTCTGTTC 419
||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||
Sbjct 360 CTCCATGAGCTACAAGAAACTTGCAGAGGACCTCAAACCTGGCGATGTGATTCTTTGTTC 419
Query 420 AGACGGCACAATCTCTTTAACTGTCTTGTCCTGTGACAAGTCTTTCGGTCTTGTTCGTTG 479
||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 420 AGACGGCACAATCTCACTAACTGTCTTGTCCTGTGACAAGTATCTCGGTCTTGTTCGTTG 479
Query 480 CCGTTGCGAGAACTCTGCAATTCTAGGAGAAAGAAAAAACGTTAATCTTCCTGGAATTGT 539
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 480 CCGTTGCGAGAACTCTGCAATTCTTGGAGAAAGAAAGAACGTTAATCTTCCTGGAATTGT 539
Query 540 AGTTGATCTCCCAACACTTACTGAGAAAGATAAAGAAGATATCATCCAATGGGGAGTTCC 599
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 540 AGTTGATCTCCCAACACTTACCGAGAAAGATAAAGAAGATATTATGCAATGGGGAGTTCC 599
Query 600 GAACAAAATCGACATCATCGCTCTTTCTTTTGTTCGTAAAGGATCTGACCTAA-CTGAAG 658
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 600 GAACAAAATCGACATAATCGCTCTTTCTTTTGTTCGTAAAGGATCTGACCTAATC-GAAG 658
Query 659 TTAGGAGGTTACTTGGAGAACACTCAAAGAACATCATGCTCATGTCAAAGGTGGAGAATC 718
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 659 TTAGGAAGTTACTTGGAGAGCACTCAAAGAACATCATGCTTATGTCAAAGGTGGAGAATC 718
Query 719 AAGAAGGGGTCATGAATTGTGAAAAGATTCTGGAGAATTCTGATGCTTTCATGGTGGCTA 778
|||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 AAGAAGGGGTGATGAATTTTGATAAGATTCTGGAGAATTCTGATGCTTTCATGGTGGCTA 778
Query 779 GAGGAGATCTTGGAATGGAGATTCCGATCGAAAAGATGTTCCTTGCTCAGAAAACAATGA 838
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 779 GAGGAGATCTTGGGATGGAGATTCCAATCGAAAAGATGTTTCTTGCTCAGAAAACAATGA 838
Query 839 TCAAGATGGCTAATGCTCTTGGGAAACCAGTTGTCACAGCCACACAGATGCTTGAATCCA 898
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 839 TCAAGATGGCTAATGCTCTTGGGAAACCAGTTGTAACAGCTACACAGATGCTTGAATCCA 898
Query 899 TGACAGTATCTCCTCGTCCGACTAGAGCTGAAGCCACTGACGTTGCAAACGCTGTTCTTG 958
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 899 TGACAGTATCTCCTCGTCCGACTAGAGCTGAAGCTACCGACGTTGCAAACGCGGTTCTTG 958
Query 959 ACGGGACAGACTGCGTTATGCTTAGTGGAGAAACCGCTGCTGGAGCTCACCCTGAGGCTG 1018
| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 959 ATGGCACAGATTGCGTTATGCTTAGTGGAGAAACCGCTGCTGGAGCTCACCCTGAGACAG 1018
Query 1019 CCGTGCTAACAATGTCAAGGATCTGTAAAGAAGCAGAGGATTTCATCGATTACGACATTC 1078
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1019 CCGTGCTAACAATGTCAAGGATCTGTAAAGAAGCAGAGAATTTCATCGATTACGACATTC 1078
Query 1079 TCCACAAGAAAACCCTAGGAATGGTTTCGTTACCGTTATCTCCGATCGAGAGCTTAGCTG 1138
|||||||||||||||||||||| || ||| |||||||||| || ||||||||||||||||
Sbjct 1079 TCCACAAGAAAACCCTAGGAATCGTCTCGGTACCGTTATCCCCAATCGAGAGCTTAGCTG 1138
Query 1139 CTTCAGTTGTTTCGACGGCACAGAGTGTTTTTGCGTCGGCGATCGTTGTTCTCACCAAAG 1198
|||||| |||||| || || | ||||||||||||| | |||||||| || ||||| ||||
Sbjct 1139 CTTCAGCTGTTTCTACCGCGCGGAGTGTTTTTGCGACAGCGATCGTCGTCCTCACTAAAG 1198
Query 1199 GCGGTTACACGGCGGAGCTTGTGGCTAAATACAGGCCGAGCGTTCCGATTTTGTCAGTGA 1258
|||| ||||| || |||||||||||||||||| | || |||||||| |||||||||||||
Sbjct 1199 GCGGATACACCGCAGAGCTTGTGGCTAAATACCGTCCCAGCGTTCCAATTTTGTCAGTGA 1258
Query 1259 TTGTGCCAGAGATTGCTCAAGGGAATGATATGGAGAT-GTCGTGCTCAGACTCGGTGGCT 1317
||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1259 TTGTGCCGGAGATTGCTCAAGGGAATGATATTGA-ATTGTCGTGCTCAGACTCGGTGGCT 1317
Query 1318 CATGCGGCGAGACGTGGTTTGATTTACCGTAGGATTATTCCGGTGGTGGCGACGGGATCT 1377
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1318 CATGTAGCGAGACGTGGTTTGATTTACCGTGGGATTATTCCGGTGGTGGCGACGGGATCT 1377
Query 1378 TCGGCTAGGGATTCAAACAAAGATGCAACGGAGGAGATGATTA-ATTTGGCTATCGGATT 1436
||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 1378 TCGGCTAGGGATTTAAACAAAGATGCAACGGAGGAGATGATTAGATTCG-CTATCGGATT 1436
Query 1437 CGCGAAGACGAAGGGAATTTGCAAGAATGGAGATTCGATTGTGGCGTTGCACAAGATTGA 1496
|| ||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||
Sbjct 1437 TGCAAAGACGAAGGGAATTTGTAAGACTGGAGATTCCATTGTGGCTTTGCACAAGATTGA 1496
Query 1497 TGGTTCCTCTGTTGTTAAGATAGTGACCGTGGAGTAA 1533
||||||||||||||| |||||||||||||| ||||||
Sbjct 1497 TGGTTCCTCTGTTGTGAAGATAGTGACCGTCGAGTAA 1533
> Ahg340564 jgi|Araly1|340564|fgenesh1_pg.C_scaffold_3000327
Length=1533
Score = 1550 bits (839), Expect = 0.0
Identities = 1320/1551 (85%), Gaps = 38/1551 (2%)
Strand=Plus/Plus
Query 1 ATGGAGATGTTACTTGGTGGAC-AAGCAACCAATGGAGCTCTT-CGTTCAAAGACGAAGA 58
||||||| |||||||| ||||| || ||| ||||||||| ||| | |||||||||||||
Sbjct 1 ATGGAGAAGTTACTTGCTGGACAAACCAA-CAATGGAGCCCTTAAG-TCAAAGACGAAGA 58
Query 59 TAATTTGTACTCTTGGACCGGTTTCAAGATCGGTGGAGATGATTGAGAAGCTTCTCAAGG 118
| | |||||||| ||||| | ||| ||||| || |||||| |||||||||||||||| |
Sbjct 59 TCGTGTGTACTCTCGGACCTGCTTCGAGATCTGTTGAGATGGTTGAGAAGCTTCTCAAAG 118
Query 119 CTGGTATGAACGTAGCCCGGTTCAATTTCTCTCATGGTTCTCACTCTTACCATCAAGAAA 178
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 119 CCGGTATGAACGTAGCCCGGTTCAATTTCTCCCATGGTTCTCACTCGTACCATCAAGAAA 178
Query 179 CTCTCGATAATCTCCGAACCGCCATGGACAACACTGGTATT-CTCTCCGCCGTCATGCTC 237
||||||| |||||| ||||||||||||| |||||| ||||| || | ||||||||||||
Sbjct 179 CTCTCGACAATCTCAGAACCGCCATGGAAAACACTTGTATTCCT-TGTGCCGTCATGCTC 237
Query 238 GACACAAAGGGTCCTGAGATACGAACCGGGTTTCTCAAAGAAGGCAAACCGATACAGCTA 297
|||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||
Sbjct 238 GACACAAAGGGTCCTGAGATCCGAACCGGATTTCTCAAAGAAGGCAAACCGGTTGAGCTA 297
Query 298 AACCAAGGTCAAGAGATCACCATCTCAATTGATTACATGATAGAAGGAGATTCAAACGTT 357
| ||||||||||||||||| ||||||| |||||||| || |||||||||||||||
Sbjct 298 ATTCAAGGTCAAGAGATCACAATCTCAACTGATTACACAATGGAAGGAGATTCAAACACA 357
Query 358 ATCTCCATGAGCTACAAGAAACTTGCAGAAGA-CGTCAA-ACCTGGTGATGTGATTCTCT 415
||||||||||| |||||||||||||| ||||| | |||| || || || ||||||||||
Sbjct 358 ATCTCCATGAGTTACAAGAAACTTGCTGAAGATC-TCAAGTCC-GGCGACGTGATTCTCT 415
Query 416 GTTCAGACGGCACAATCTCT-TTAACTGTCTTGTCCTGTGACAAGTCTTTCGGTCTTGTT 474
|||| ||||||||||||||| || || |||||| ||||||||||| | |||||||||||
Sbjct 416 GTTCCGACGGCACAATCTCTCTT-ACCGTCTTGGCCTGTGACAAGAATCTCGGTCTTGTT 474
Query 475 CGTTGCCGTTGCGAGAACTCTGCAATTCTAGGAGAAAGAAAAAACGTTAATCTTCCTGGA 534
||||||||||||||||||||||| |||| ||||||||||| ||||| || || ||||||
Sbjct 475 CGTTGCCGTTGCGAGAACTCTGCGGTTCTTGGAGAAAGAAAGAACGTGAACCTCCCTGGA 534
Query 535 ATTGTAGTTGATCTCCCAACACTTACTGAGAAAGATAAAGAAGATAT-CATCCAATGGGG 593
|| |||||||||||||||||||| || ||||| ||| |||| ||||| | ||||||||||
Sbjct 535 ATCGTAGTTGATCTCCCAACACTCACAGAGAAGGATCAAGAGGATATTC-TCCAATGGGG 593
Query 594 AGTTCCGAACAAAATCGACATCATCGCTCTTTCTTTTGTTCGTAAAGGATCTGACCTAAC 653
|||||| || || || || |||||||||||||| |||||||||||||||||||| ||
Sbjct 594 AGTTCCCAATAAGATTGATATCATCGCTCTTTCCTTTGTTCGTAAAGGATCTGATCTGG- 652
Query 654 TGAAGTT-AGGAGGTTACTTGGAGAACACTCAAAGAACATCATGCTCATGTCAAAGGTGG 712
|| || | |||| || |||||||| ||| |||||| |||||||| |||||||||||||
Sbjct 653 TGGAGGTCAGGAAATTGCTTGGAGAGCACGCAAAGAGTATCATGCTTATGTCAAAGGTGG 712
Query 713 AGAATCAAGAAGGGGTCATGAATTGT-GAAAAGATTCTGGAGAATTCTGATGCTTTCATG 771
||||||||||||| || ||||||| | || ||||||||||||||||||||||| ||||||
Sbjct 713 AGAATCAAGAAGGAGTGATGAATT-TCGACAAGATTCTGGAGAATTCTGATGCATTCATG 771
Query 772 GTGGCTAGAGGAGATCTT-GGAATGGAGATTCCGATCGAAAAGATGTTCCTTGCTCAGAA 830
||||||||||| ||| || ||||||||||||||||| || |||||||| |||||||||||
Sbjct 772 GTGGCTAGAGGTGAT-TTAGGAATGGAGATTCCGATTGAGAAGATGTTTCTTGCTCAGAA 830
Query 831 AACAATGAT-CAAGATGGCTAATGCTCTTGGGAAACCAGTTGTCACAGCCACACAGATGC 889
| ||||| || || |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 831 GATGATGATTCA-GAAGGCTAATGCTCTTGGGAAGCCAGTCGTCACAGCCACACAGATGC 889
Query 890 TTGAATCCATGAC-AGTATCTCCTCGTCCGACTAGAGCTGAAGCCACTGACGTTGCAAAC 948
|||| || ||||| | ||||||||||||||||||||| |||||||| || || || |||
Sbjct 890 TTGAGTCAATGACCAA-ATCTCCTCGTCCGACTAGAGCCGAAGCCACCGATGTAGCTAAC 948
Query 949 GCTGTTCTTGACGGGACAGACTGCGTTATGCTTAGTGGAGAAACCGCTGCTGGAGCTCAC 1008
|||||||||||||| || || ||||| ||||| |||||||||||||| || |||||||||
Sbjct 949 GCTGTTCTTGACGGCACTGATTGCGTCATGCTCAGTGGAGAAACCGCAGCCGGAGCTCAC 1008
Query 1009 CCTGAGGCTGCCGTGCTAACAATGTCAAGGATCTGTAAAGAAGCAGAGGATTTCATCGAT 1068
|||||| | |||||||| ||||||||||| |||||||| || |||||| ||||||||||
Sbjct 1009 CCTGAGACCGCCGTGCTTACAATGTCAAGAATCTGTAAGGAGGCAGAGAATTTCATCGAC 1068
Query 1069 TACGACATTCTCCACAAGAAAACCCTAGGA-ATGGTTTCGTTACCGT-TATCTCCGATCG 1126
||||||| | |||||||| | | || | || |||||||| || | ||||||| ||||
Sbjct 1069 TACGACACAATGCACAAGAAGATTCAAG-ATATCGTTTCGTTGCC-TCTATCTCCTATCG 1126
Query 1127 AGAGCTTAGCTGCTTCAGTTGTTTCGACGGCACAG-AGTGTTTTTGCGTCGGCGATCGTT 1185
|||||||||||||||||| ||||||||||| || ||| ||| |||| | ||||| ||
Sbjct 1127 AGAGCTTAGCTGCTTCAGCCGTTTCGACGGCT-AGGAGTCTTTGTGCGGCTGCGATTGTG 1185
Query 1186 GTTCTCACCAAAGGCGGTTACACGGCGGAGCTTGTGGCTAAATACAGGCCGAGCGTTCCG 1245
||||| ||||| || |||||||||| ||||||||| || || |||||||| |||||||||
Sbjct 1186 GTTCTAACCAAGGGAGGTTACACGGTGGAGCTTGTTGCGAAGTACAGGCCTAGCGTTCCG 1245
Query 1246 ATT-TTGTCAGTGATTGTGCCAGAGATTGCTCA-AGGGAATGATATGGAGATG-TCGTGC 1302
||| || || ||||||||||| |||||| ||| | || |||| | ||| || ||||||
Sbjct 1246 ATTCTT-TCGGTGATTGTGCCGGAGATTACTCGTACCGA-TGATTTCGAG-TGGTCGTGC 1302
Query 1303 TCAGACTCGGTGGCTCATGCGGCGAGACGTGGTTTGATTTACCGTAGGATTA-TTCCGGT 1361
|| || | | |||||||| |||||||||||| |||||||||||| ||| || |||||||
Sbjct 1303 TCTGAAACTGCGGCTCATGTGGCGAGACGTGGATTGATTTACCGT-GGAATAGTTCCGGT 1361
Query 1362 GGTGGCGACGGGATCTTCGGCTAGGGATTCAAACAAAGATGCAACGGAGGAGATGATTAA 1421
| ||||||| ||| |||| |||||| ||| ||||| ||| | |||||||||| ||||||
Sbjct 1362 GATGGCGACAGGAGCTTCTGCTAGGTCTTCGAACAAGGATTCGACGGAGGAGACGATTAA 1421
Query 1422 TTTGGCTATCGGATTCGCGAAGACGAAGGGAATTTGCAAGAATGGAGATTCGATTGTGGC 1481
|| || || | ||| ||||||| ||||||||| || ||| ||||| |||||||||||
Sbjct 1422 ATTCGCCATTGAATTTGCGAAGAAGAAGGGAATATGTAAGGCGGGAGACTCGATTGTGGC 1481
Query 1482 GTTGCACAAGATTGATGGTTCCTCTGTTGTTAAGATAGTGACCGTGGAGTA 1532
|||||||||||| ||||||||||||||||| ||||| ||| |||||||||
Sbjct 1482 GTTGCACAAGATCGATGGTTCCTCTGTTGTCAAGATTTTGAACGTGGAGTA 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5