BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55660.1
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485999 jgi|Araly1|485999|fgenesh2_kg.5__1991__AT3G55660.1 3038 0.0
> Ahg485999 jgi|Araly1|485999|fgenesh2_kg.5__1991__AT3G55660.1
Length=1911
Score = 3038 bits (1645), Expect = 0.0
Identities = 1835/1923 (95%), Gaps = 27/1923 (1%)
Strand=Plus/Plus
Query 5 AATTACTAttcttcttcttcttctctatgatctctgcttccttttttctGGGTATCTaaa 64
||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AATAACTACTATTCTTCTTCTTCTCTATGATCTCTGCTTCCTTGTTTCTGGGTATCTAAA 60
Query 65 aaaaCTCAATC--TTTATTTCTTTTTGTTAGCGAAAATGGAGGATAATAGCTGTATCGGG 122
|||| |||||| ||| ||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 61 AAAAATCAATCTTTTTTTTTGTTTTTGTTAGCGAAAATGGAGAATAATAGCTGTATTGGG 120
Query 123 TTTG-AGGGATCGAAAAGATTTGGTGAGACTAGTAAACGTATCATTGGTTTGATTGACTC 181
|||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TTTGAAGGG-TCGAGAAGATTTGGTGAG---AGTAAACGTATCATTGGTTTGATTGACTC 176
Query 182 AGTGACTGAGTCAACGACTGATTCAAGTCTTAGCAGCTCAAGTT-CTGGTGTTGGATCGA 240
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 177 AGTGACTGAGTCAACGACTGATTCAAGTCTTAGCAGCTCAAGTTGC-GGTGCTGGATCGA 235
Query 241 GCTCCGGGAGGTCTTCTGTAGCTGAGAGATCTG-----T-T---TCATCACCTCCGACGA 291
||||||||||||||||||| || |||||||||| | | ||||| ||||||||||
Sbjct 236 GCTCCGGGAGGTCTTCTGTGGCGGAGAGATCTGTTTCTTCTCCGTCATCTCCTCCGACGA 295
Query 292 AATCGCAGATTCTTGGATGGCCGTTAGGACAAGGTTCATGGAGGAAGAGTTCTGGTAAAA 351
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 296 AATCGCAGATCCTTGGATGGCCGTTAGGGCAAGGCTCATGGAGGAAGAGTTCTGGTAAAA 355
Query 352 TGAAGAAGAAAACTCCGACAAAGATCGATGATTTTGGGTTTAAGAGAGTTGGAACAGAGA 411
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 356 TGAAGAAGAAAACTCCGACAAAGATCGATGATTTCGGGTTTAAGAGAGTTGGAACAGAGA 415
Query 412 CTTCAGAGATTGAGTTGTTGAAAGAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 416 CTTCAGAGATTGAGTTGTTGAAAGAGAGAATGGCGAAGTTGTTGCTTGGTGAAGATATGT 475
Query 472 CTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCT 531
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 476 CTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCAAACGCCATTACCAATCTCT 535
Query 532 ATGCTGCAATATTGGGACAACAATGGAGGCTAGAGCCAATCCCTAGTGAGAAAAAATTAA 591
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 536 ATGCTGCAATATTGGGACAACAATGGAGGTTAGAGCCAATCCCTAGTGAGAAAAAATCAA 595
Query 592 TGTGGAGAAGAGAAATCGAAGTTCTTCTTTCTGTTAGTGATCACATTGTTGAATTGGTAC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGTGGAGAAGAGAAATCGAAGTTCTTCTTTCTGTTAGTGATCACATTGTTGAATTGGTAC 655
Query 652 CTTCCTTTCAGAATTTCCCCAATGGAAACAAGATTGAGGTGATGAACTGCAGACCAAGAT 711
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 656 CTTCCTTTCAGAATTTCCCCAATGGAAACAAGATTGAGGTGATGAATTGCAGACCAAGAT 715
Query 712 CAGATCTCTTTACTTGTCTTCCTGCTCTTAGGAAGCTAGACAATATGCTTATTGAAATAT 771
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 CAGATCTCTTTACTTGTCTTCCTGCTCTTAGGAAGCTAGACCATATGCTTATTGAAATAT 775
Query 772 TAGATAGTTTTGGAGAAACAGAGTTCTGGTACGTTGATCAAGGGATTGTAGCTGCGGAAT 831
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 776 TAGATAGTTTTGGAGAAACAGAGTTCTGGTACGTTGATCAAGGAATCGTAGCTGCGGAAT 835
Query 832 CTGCAAGGTCTAACTCTTTCCGTGAAGACGGAGACAAATGGTGGCTTCCGCTGCCGCGTG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CTGCAAGGTCTAACTCTTTCCGTGAAGACGGAGACAAATGGTGGCTTCCGCTGCCGCGTG 895
Query 892 TGCCATCCGATGGACTTACCGAACAAACTAGGAAGAAACTGGATCATACTCGCGAATTCA 951
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
Sbjct 896 TGCCATCCGATGGACTTACTGAGCAATCTAGGAAGAAACTGGATCATACTCGCGAATTTA 955
Query 952 CCAACCAAATCTTGAAAGCTTGTATGTCAATCAACAGCATTGCTTTAGCTGAAATGGAAG 1011
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 956 CTAACCAAATCTTGAAAGCTTGTATGTCAATCAACAGCATTGCTTTAGCTGAAATGGAGG 1015
Query 1012 TTCCACAATCATACCTTGAAGCCCTTCCAAAGAACGGAAGATCTTGTCTTGGAGATTTTC 1071
|||||||||||||||||||||| |||||||||||||| ||||| || ||||| |||||||
Sbjct 1016 TTCCACAATCATACCTTGAAGCTCTTCCAAAGAACGGGAGATCATGCCTTGGCGATTTTC 1075
Query 1072 TATATAGAAACATCACATCGGATAACTTCTCTGCGGATCACTTGCTAGAATCAATAGATC 1131
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1076 TATATAGAAACATCACATCGGATAACTTCTCAGCAGATCACTTGCTGGAATCAATAGATC 1135
Query 1132 TTTCATCTGAGCTTGCGGTTGTAGAAATGGCGAACCGAGTAGAAGCATCAATGTACGTTT 1191
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TTTCATCTGAGCTTGCCCTTGTAGAAATGGCGAACCGAGTAGAAGCATCAATGTACGTTT 1195
Query 1192 GGAGGAGAAGAGCTCACTCGAGGCATCTGATATCTCTGTATCGATCCACAAGTACAAGAT 1251
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1196 GGAGGCGAAGAGCTCACTCGAGGCATCTGATTTCTCTGTATCGGTCCACAAGTACAAGAT 1255
Query 1252 GGGGGATGATAGTGAAGGAGATGATGATGCATCAAACCGATGGTGACAAAAGGGAAATAT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GGGGGATGATAGTGAAGGAGATGATGATGCATCAAACCGATGGTGACAAAAGGGAAATAT 1315
Query 1312 TTGCGGAGAGAGCAGAAAGCTTATTGATCCGTCTCAAGCAACGTTTCCCGGGACTTAGAC 1371
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TTGCGGAAAGAGCAGAAAGCTTATTGATCCGTCTCAAGCAACGTTTCCCGGGACTTAGAC 1375
Query 1372 AAACAGCTTTAGACACAAGCAAGATCCAATACAACAAGGATGTAGGAAAGTCTATACTTG 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1376 AAACAGCTTTAGACACAAGCAAGATCCAATACAACAAGGATGTAGGAAAGTCTATTCTTG 1435
Query 1432 AGAGCTACTCAAGGGTATTAGAGAGTTTAGCGTATAGCATTGGTGTACGCATAGAGGAAG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AGAGCTACTCAAGGGTATTAGAGAGTTTAGCGTATAGCATTGGTGTACGCATAGAGGAAG 1495
Query 1492 TGTTGTTCATGGATGACATCAGCAAAGATGATGGTGATGGTGATGATGATTCTTGTTCAG 1551
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 1496 TGTTGTTCATGGATGACATCAGCAAAGATGATGGTGATG---ATGAT--T-CTTGTTCAG 1549
Query 1552 ACAAGTTGAGATTGTTGTCTAAAGAAGCAGCTAGTGGTGGTTCAGGCTCTCTAAGGGAGA 1611
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1550 ACAAGTTGAGATTGTTGTCTAAAGAAGCAGCTAATGGTGGCTCAGGCTCTCTAAGAAAGA 1609
Query 1612 AACTTTCTGCTCCATCGCTGTTCTCTGTGTCATTCTCAGGCACGTCAACTCCGTACAGAA 1671
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 AACTTTCTGCCCCATCGTTGTTCTCTGTGTCATTCTCAGGCACGTCAACTCCGTACAGAA 1669
Query 1672 CTCTATCTTTCTCTGCATCGACTCCAAGTTATTCACCAATGCCGTTGATAAGCCCCATCA 1731
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CTCCATCTTTCTCTGCATCAACTCCAAGTTATTCACCAATGCCGTTGATAAGCCCCATCA 1729
Query 1732 ACGGAGGAAGAGGAGGAGAAAGAGCTCCGTTTCTCTCTGGGAGGAACATTAGAGAACGTT 1791
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1730 ACGGAGGAAGAGGAGGAGAAAGAGCACCGTTTCTCTCTGGGAGGAACATTAGAGAACGTT 1789
Query 1792 GCGGGTTTGGTCCAAAGAAAGCATTGGCCAATTATCTCCGGGGTTGAATGTTAAGTTAAA 1851
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1790 GTGGGTTTGGTCCAAAGAAAGCATTGGCCAATTATCTCCGGGGTTGAATGTTATGTTAAA 1849
Query 1852 AAATTTGGATTTAGATT--CTTTCTGTCTGTATCACACAACACGTTCTTTAtgttgttgt 1909
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1850 GAATTTGGATTTACATTTTCTTT-TGTCTGTATCACACAACACGTTCTTTATGTTGTTGT 1908
Query 1910 tgt 1912
|||
Sbjct 1909 TGT 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73171360645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5