BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55660.1 Length=1947 Score E Sequences producing significant alignments: (Bits) Value Ahg485999 jgi|Araly1|485999|fgenesh2_kg.5__1991__AT3G55660.1 3038 0.0 > Ahg485999 jgi|Araly1|485999|fgenesh2_kg.5__1991__AT3G55660.1 Length=1911 Score = 3038 bits (1645), Expect = 0.0 Identities = 1835/1923 (95%), Gaps = 27/1923 (1%) Strand=Plus/Plus Query 5 AATTACTAttcttcttcttcttctctatgatctctgcttccttttttctGGGTATCTaaa 64 ||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 AATAACTACTATTCTTCTTCTTCTCTATGATCTCTGCTTCCTTGTTTCTGGGTATCTAAA 60 Query 65 aaaaCTCAATC--TTTATTTCTTTTTGTTAGCGAAAATGGAGGATAATAGCTGTATCGGG 122 |||| |||||| ||| ||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct 61 AAAAATCAATCTTTTTTTTTGTTTTTGTTAGCGAAAATGGAGAATAATAGCTGTATTGGG 120 Query 123 TTTG-AGGGATCGAAAAGATTTGGTGAGACTAGTAAACGTATCATTGGTTTGATTGACTC 181 |||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 TTTGAAGGG-TCGAGAAGATTTGGTGAG---AGTAAACGTATCATTGGTTTGATTGACTC 176 Query 182 AGTGACTGAGTCAACGACTGATTCAAGTCTTAGCAGCTCAAGTT-CTGGTGTTGGATCGA 240 |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| Sbjct 177 AGTGACTGAGTCAACGACTGATTCAAGTCTTAGCAGCTCAAGTTGC-GGTGCTGGATCGA 235 Query 241 GCTCCGGGAGGTCTTCTGTAGCTGAGAGATCTG-----T-T---TCATCACCTCCGACGA 291 ||||||||||||||||||| || |||||||||| | | ||||| |||||||||| Sbjct 236 GCTCCGGGAGGTCTTCTGTGGCGGAGAGATCTGTTTCTTCTCCGTCATCTCCTCCGACGA 295 Query 292 AATCGCAGATTCTTGGATGGCCGTTAGGACAAGGTTCATGGAGGAAGAGTTCTGGTAAAA 351 |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 296 AATCGCAGATCCTTGGATGGCCGTTAGGGCAAGGCTCATGGAGGAAGAGTTCTGGTAAAA 355 Query 352 TGAAGAAGAAAACTCCGACAAAGATCGATGATTTTGGGTTTAAGAGAGTTGGAACAGAGA 411 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 356 TGAAGAAGAAAACTCCGACAAAGATCGATGATTTCGGGTTTAAGAGAGTTGGAACAGAGA 415 Query 412 CTTCAGAGATTGAGTTGTTGAAAGAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGT 471 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 416 CTTCAGAGATTGAGTTGTTGAAAGAGAGAATGGCGAAGTTGTTGCTTGGTGAAGATATGT 475 Query 472 CTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCT 531 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 476 CTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCAAACGCCATTACCAATCTCT 535 Query 532 ATGCTGCAATATTGGGACAACAATGGAGGCTAGAGCCAATCCCTAGTGAGAAAAAATTAA 591 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 536 ATGCTGCAATATTGGGACAACAATGGAGGTTAGAGCCAATCCCTAGTGAGAAAAAATCAA 595 Query 592 TGTGGAGAAGAGAAATCGAAGTTCTTCTTTCTGTTAGTGATCACATTGTTGAATTGGTAC 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 TGTGGAGAAGAGAAATCGAAGTTCTTCTTTCTGTTAGTGATCACATTGTTGAATTGGTAC 655 Query 652 CTTCCTTTCAGAATTTCCCCAATGGAAACAAGATTGAGGTGATGAACTGCAGACCAAGAT 711 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 656 CTTCCTTTCAGAATTTCCCCAATGGAAACAAGATTGAGGTGATGAATTGCAGACCAAGAT 715 Query 712 CAGATCTCTTTACTTGTCTTCCTGCTCTTAGGAAGCTAGACAATATGCTTATTGAAATAT 771 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 716 CAGATCTCTTTACTTGTCTTCCTGCTCTTAGGAAGCTAGACCATATGCTTATTGAAATAT 775 Query 772 TAGATAGTTTTGGAGAAACAGAGTTCTGGTACGTTGATCAAGGGATTGTAGCTGCGGAAT 831 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 776 TAGATAGTTTTGGAGAAACAGAGTTCTGGTACGTTGATCAAGGAATCGTAGCTGCGGAAT 835 Query 832 CTGCAAGGTCTAACTCTTTCCGTGAAGACGGAGACAAATGGTGGCTTCCGCTGCCGCGTG 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 CTGCAAGGTCTAACTCTTTCCGTGAAGACGGAGACAAATGGTGGCTTCCGCTGCCGCGTG 895 Query 892 TGCCATCCGATGGACTTACCGAACAAACTAGGAAGAAACTGGATCATACTCGCGAATTCA 951 ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| | Sbjct 896 TGCCATCCGATGGACTTACTGAGCAATCTAGGAAGAAACTGGATCATACTCGCGAATTTA 955 Query 952 CCAACCAAATCTTGAAAGCTTGTATGTCAATCAACAGCATTGCTTTAGCTGAAATGGAAG 1011 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 956 CTAACCAAATCTTGAAAGCTTGTATGTCAATCAACAGCATTGCTTTAGCTGAAATGGAGG 1015 Query 1012 TTCCACAATCATACCTTGAAGCCCTTCCAAAGAACGGAAGATCTTGTCTTGGAGATTTTC 1071 |||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||| Sbjct 1016 TTCCACAATCATACCTTGAAGCTCTTCCAAAGAACGGGAGATCATGCCTTGGCGATTTTC 1075 Query 1072 TATATAGAAACATCACATCGGATAACTTCTCTGCGGATCACTTGCTAGAATCAATAGATC 1131 ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct 1076 TATATAGAAACATCACATCGGATAACTTCTCAGCAGATCACTTGCTGGAATCAATAGATC 1135 Query 1132 TTTCATCTGAGCTTGCGGTTGTAGAAATGGCGAACCGAGTAGAAGCATCAATGTACGTTT 1191 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 TTTCATCTGAGCTTGCCCTTGTAGAAATGGCGAACCGAGTAGAAGCATCAATGTACGTTT 1195 Query 1192 GGAGGAGAAGAGCTCACTCGAGGCATCTGATATCTCTGTATCGATCCACAAGTACAAGAT 1251 ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1196 GGAGGCGAAGAGCTCACTCGAGGCATCTGATTTCTCTGTATCGGTCCACAAGTACAAGAT 1255 Query 1252 GGGGGATGATAGTGAAGGAGATGATGATGCATCAAACCGATGGTGACAAAAGGGAAATAT 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 GGGGGATGATAGTGAAGGAGATGATGATGCATCAAACCGATGGTGACAAAAGGGAAATAT 1315 Query 1312 TTGCGGAGAGAGCAGAAAGCTTATTGATCCGTCTCAAGCAACGTTTCCCGGGACTTAGAC 1371 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 TTGCGGAAAGAGCAGAAAGCTTATTGATCCGTCTCAAGCAACGTTTCCCGGGACTTAGAC 1375 Query 1372 AAACAGCTTTAGACACAAGCAAGATCCAATACAACAAGGATGTAGGAAAGTCTATACTTG 1431 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1376 AAACAGCTTTAGACACAAGCAAGATCCAATACAACAAGGATGTAGGAAAGTCTATTCTTG 1435 Query 1432 AGAGCTACTCAAGGGTATTAGAGAGTTTAGCGTATAGCATTGGTGTACGCATAGAGGAAG 1491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1436 AGAGCTACTCAAGGGTATTAGAGAGTTTAGCGTATAGCATTGGTGTACGCATAGAGGAAG 1495 Query 1492 TGTTGTTCATGGATGACATCAGCAAAGATGATGGTGATGGTGATGATGATTCTTGTTCAG 1551 ||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| Sbjct 1496 TGTTGTTCATGGATGACATCAGCAAAGATGATGGTGATG---ATGAT--T-CTTGTTCAG 1549 Query 1552 ACAAGTTGAGATTGTTGTCTAAAGAAGCAGCTAGTGGTGGTTCAGGCTCTCTAAGGGAGA 1611 ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| Sbjct 1550 ACAAGTTGAGATTGTTGTCTAAAGAAGCAGCTAATGGTGGCTCAGGCTCTCTAAGAAAGA 1609 Query 1612 AACTTTCTGCTCCATCGCTGTTCTCTGTGTCATTCTCAGGCACGTCAACTCCGTACAGAA 1671 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1610 AACTTTCTGCCCCATCGTTGTTCTCTGTGTCATTCTCAGGCACGTCAACTCCGTACAGAA 1669 Query 1672 CTCTATCTTTCTCTGCATCGACTCCAAGTTATTCACCAATGCCGTTGATAAGCCCCATCA 1731 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1670 CTCCATCTTTCTCTGCATCAACTCCAAGTTATTCACCAATGCCGTTGATAAGCCCCATCA 1729 Query 1732 ACGGAGGAAGAGGAGGAGAAAGAGCTCCGTTTCTCTCTGGGAGGAACATTAGAGAACGTT 1791 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1730 ACGGAGGAAGAGGAGGAGAAAGAGCACCGTTTCTCTCTGGGAGGAACATTAGAGAACGTT 1789 Query 1792 GCGGGTTTGGTCCAAAGAAAGCATTGGCCAATTATCTCCGGGGTTGAATGTTAAGTTAAA 1851 | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1790 GTGGGTTTGGTCCAAAGAAAGCATTGGCCAATTATCTCCGGGGTTGAATGTTATGTTAAA 1849 Query 1852 AAATTTGGATTTAGATT--CTTTCTGTCTGTATCACACAACACGTTCTTTAtgttgttgt 1909 |||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1850 GAATTTGGATTTACATTTTCTTT-TGTCTGTATCACACAACACGTTCTTTATGTTGTTGT 1908 Query 1910 tgt 1912 ||| Sbjct 1909 TGT 1911 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73171360645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5