BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55672.1
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938511 jgi|Araly1|938511|scaffold_502702.1 704 0.0
Ahg486001 jgi|Araly1|486001|fgenesh2_kg.5__1993__AT3G55677.1 455 1e-127
> Ahg938511 jgi|Araly1|938511|scaffold_502702.1
Length=543
Score = 704 bits (381), Expect = 0.0
Identities = 463/503 (92%), Gaps = 4/503 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCCATTACTAATTCTCATCTTATATTATTGTTTATAATCTCTTCTACTTTTATT 60
|||||||||||||| ||||||||| ||||||| |||||| ||||||||||||| ||||||
Sbjct 22 ATGGCTTCCATTACCAATTCTCATTTTATATTGTTGTTTCTAATCTCTTCTACCTTTATT 81
Query 61 GTTTTTACGTTAGCATTAGATTTTTCAGATGTTCCAGCAGAAGCACCAGATGGCTTTTTA 120
||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 82 GTTTTTACGTTAGCACTAGATTTTTCAGATGTTGCAGCAGAAGCACCAGACGGCTTCTTA 141
Query 121 CCTTTAGCCAAAAAGCATGTTGTAATTCGCAATACTGTAGAGAATGGAGAAGGGTTGAAT 180
||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 142 CCTCTAGCCAAAAAGCATGTTGTAATTCGCAATACCGTAGAGAATGGAGAAGAGTTGAAT 201
Query 181 ATACATTGCAAATCCAGTGAGGATGATTTGGGACATATCCATCTTAAACATGGGCATACT 240
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 202 ATACATTGCAAATCTAGTGAGGATGATTTGGGGCATATCCATCTTAAACATGGACATACT 261
Query 241 TGGGATTTCAGGTTTCATGTTAACATGTCAAAATCTACAAAATTTCGTTGCCATTTTTGG 300
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 262 TGGGATTTCAGATTTCATGTTAACATGTCAAAATCTACAAAATTTCGTTGTCATTTTTGG 321
Query 301 TGGTATGCAGGCGGTAATGATT-TTTTCAATTACTGGTTTGATATATTTAAAATATCTAG 359
|||||||||||||||| |||| |||| |||||||||||||||||||||||| |||| ||
Sbjct 322 TGGTATGCAGGCGGTACCGATTATTTT-AATTACTGGTTTGATATATTTAAAGTATCCAG 380
Query 360 AGATGACAAACCATCAGGAAAATATCCTGTTTGCAAAGAATGCATTTGGGAGTTAAACCG 419
||| || |||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 381 AGACGATAAACCATCGGGAAGGTATCCAGTTTGCAAAGAATGCATTTGGGAGTTAAACCA 440
Query 420 ATACGGTTTTGAAGGCTAT-ATTTGTCGTATAAATCGTGATAAATCAGATCTTTGGTGTT 478
|||||| | ||||| | || ||||||||||||||||||||| |||||||| ||||||||
Sbjct 441 ATACGGCTCTGAAGAC-ATTATTTGTCGTATAAATCGTGATGGATCAGATCCTTGGTGTT 499
Query 479 TCTCGATGGACGATAAACCTTAA 501
|| | ||||||||||||||||||
Sbjct 500 TCACAATGGACGATAAACCTTAA 522
> Ahg486001 jgi|Araly1|486001|fgenesh2_kg.5__1993__AT3G55677.1
Length=595
Score = 455 bits (246), Expect = 1e-127
Identities = 429/514 (83%), Gaps = 26/514 (5%)
Strand=Plus/Plus
Query 1 ATGGCTTCCATTACTAATTCTCATCTTATATTATTGTTTATAATCTCTTCTACTTTTATT 60
|||||||||||||||||||||||| ||||||| |||||| | |||| |||||||||||||
Sbjct 14 ATGGCTTCCATTACTAATTCTCATTTTATATTGTTGTTTCTTATCTTTTCTACTTTTATT 73
Query 61 GTTTTTACGTTAGCATTAGATTTTTCAGATGTTCCAGCAGAAGCACCAGATGGCTTTTTA 120
||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||
Sbjct 74 GTTTTTACGTTAGCATTAGATTTATCAGATGTTGCAGCAGAAGCACCGGATGGCTTGTTA 133
Query 121 CCTTTAGCCAAAAAGCATGTTGTAATTCGCAATACTGT-AGAGAATGGAGAAGGGTTGAA 179
||| || ||||||| || |||||||||||||| ||||| | | || ||||||| |||||
Sbjct 134 CCTCTATCCAAAAAACACGTTGTAATTCGCAACACTGTAACA-AACGGAGAAGTTTTGAA 192
Query 180 TATACATTGCAAATCCAGTGAGGATGATTTGGGACATATCCATCTTAAACATGGGCATAC 239
||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 193 TATACATTGCAAATCCAGTGAGGATGATTTGGGGCATATTCGTCTTAAACATGGGCATAC 252
Query 240 TTGGGATTTCAGGTTTCATGTTAACATGTCAAAATCTACAAAATTTCGTTGCCATTTTTG 299
||||| |||||| |||| ||||||| | ||| |||||| | |||||||| ||||||||
Sbjct 253 TTGGGGTTTCAGATTTCGTGTTAACTTTTCATTATCTACGTATTTTCGTTGTCATTTTTG 312
Query 300 GTGGTAT---G--C-AGGCGGTAATGATTTTT-TCAATTACTGGTTTGATATATTTAAAA 352
|||| || | | ||||||| | | | || | | ||| ||||||||||||||||
Sbjct 313 GTGGAATTCAGTTCCAGGCGGTCCTAACTATTAT-AGTTATTGGTTTGATATATTTACTG 371
Query 353 TAT-CTAGAGATGACAAACCATCAGGAAAATATCCTGTTTGCAAAGAATGCATTTGGGAG 411
||| | ||||| || || |||| |||||| ||||| |||||| |||||||||||||||||
Sbjct 372 TATAC-AGAGACGATAACCCATTAGGAAAGTATCCAGTTTGCGAAGAATGCATTTGGGAG 430
Query 412 TTAAACCGA-T-ACGGTTTTGAAGGCTATATTTGTCGTATAAATCGTGATAAATCAGATC 469
| || || | ||| | || ||||||||||||||||||||||||||||||||
Sbjct 431 ATGTAC-GAATTACG-TCAA-AA--CTATATTTGTCGTATAAATCGTGATAAATCAGGG- 484
Query 470 TTTGGTGTTTCTCG-ATGGACGATA-AACCTTAA 501
| |||||||| || |||||| || ||||||||
Sbjct 485 T--GGTGTTTC-CGCATGGAC-ATTGAACCTTAA 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18200215953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5