BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55677.1
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486001 jgi|Araly1|486001|fgenesh2_kg.5__1993__AT3G55677.1 665 0.0
Ahg938511 jgi|Araly1|938511|scaffold_502702.1 453 6e-127
> Ahg486001 jgi|Araly1|486001|fgenesh2_kg.5__1993__AT3G55677.1
Length=595
Score = 665 bits (360), Expect = 0.0
Identities = 525/603 (87%), Gaps = 18/603 (3%)
Strand=Plus/Plus
Query 1 AATTTACAGAACCATGGCTTCCATTACTAATTCTCattatatattgttgtttcttatctt 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AATTTACATAACCATGGCTTCCATTACTAATTCTCATTTTATATTGTTGTTTCTTATCTT 60
Query 61 ttttacttttattgtatttactttagcattagatttatCAAATGTTGCAGCAGAAGCACC 120
|| |||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTCTACTTTTATTGTTTTTACGTTAGCATTAGATTTATCAGATGTTGCAGCAGAAGCACC 120
Query 121 AGACGGCTTGTTACCTCTGTCCAAAAAGCACGTTTTAATTCGCAACACTGT-TCAGAACG 179
|| |||||||||||||| |||||||| |||||| |||||||||||||||| || ||||
Sbjct 121 GGATGGCTTGTTACCTCTATCCAAAAAACACGTTGTAATTCGCAACACTGTAACA-AACG 179
Query 180 GACAAGTTTTGAATATACATTGCAAATCCAGTGAGGATGATTTGGGGCATATCCGTCTTA 239
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GAGAAGTTTTGAATATACATTGCAAATCCAGTGAGGATGATTTGGGGCATATTCGTCTTA 239
Query 240 AACATGGGGATACTTGGGGTTTCAGATTTCGTGTTAACATGGCACTAACTACGAGATTT- 298
|||||||| ||||||||||||||||||||||||||||| | || || ||||| ||||
Sbjct 240 AACATGGGCATACTTGGGGTTTCAGATTTCGTGTTAACTTTTCATTATCTACGT-ATTTT 298
Query 299 CGTTGTCACTTTTGGTGGTATGCACG--CGAC-CA-TC-TAGGCCATTATAGTTACTGGT 353
|||||||| ||||||||| || || | | | | || || | |||||||||| ||||
Sbjct 299 CGTTGTCATTTTTGGTGGAATTCA-GTTCCAGGCGGTCCTAA-CTATTATAGTTATTGGT 356
Query 354 TTGATATATTTACTGTATACAGAGACGATAATCCATTTGGAAAATATCCAATTTGCGATG 413
||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |
Sbjct 357 TTGATATATTTACTGTATACAGAGACGATAACCCATTAGGAAAGTATCCAGTTTGCGAAG 416
Query 414 AATGCGTTTGGAATATGTACGAATTAAGTGAAAACTTTATTTGTCGTATAAATCGTGATC 473
||||| ||||| | |||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 417 AATGCATTTGGGAGATGTACGAATTACGTCAAAACTATATTTGTCGTATAAATCGTGATA 476
Query 474 AATCTGGATGGTGTTTTAAAATGGACAGAGAAAATTAAGAAGAAAACACATTATCGTTCG 533
|||| || |||||||| ||||||| ||| |||| || || |||||||| ||||
Sbjct 477 AATCAGGGTGGTGTTTCCGCATGGACATTGAACCTTAA-AA-AA--CACATTATTGTTCA 532
Query 534 ATGTATCTTATCC--TAA-TACAATCATTAAAATTGATTGAATAAAATAAAATCGTTGAT 590
|| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||||
Sbjct 533 ATATATCTTATCTAATAAATACAATCATTTAAATTGATTGAATAAAATAATATCATTGAG 592
Query 591 ACT 593
|||
Sbjct 593 ACT 595
> Ahg938511 jgi|Araly1|938511|scaffold_502702.1
Length=543
Score = 453 bits (245), Expect = 6e-127
Identities = 441/532 (83%), Gaps = 27/532 (5%)
Strand=Plus/Plus
Query 1 AATTTACAGAACCATGGCTTCCATTACTAATTCTCattatatattgttgtttcttatctt 60
|||||||| || ||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 9 AATTTACATAAGCATGGCTTCCATTACCAATTCTCATTTTATATTGTTGTTTCTAATCTC 68
Query 61 ttttacttttattgtatttactttagcattagatttatCAAATGTTGCAGCAGAAGCACC 120
|| ||| |||||||| ||||| |||||| ||||||| ||| |||||||||||||||||||
Sbjct 69 TTCTACCTTTATTGTTTTTACGTTAGCACTAGATTTTTCAGATGTTGCAGCAGAAGCACC 128
Query 121 AGACGGCTTGTTACCTCT-GTCCAAAAAGCACGTTTTAATTCGCAACACTGTTCAGAACG 179
||||||||| |||||||| | |||||||||| ||| |||||||||| || || |||| |
Sbjct 129 AGACGGCTTCTTACCTCTAG-CCAAAAAGCATGTTGTAATTCGCAATACCGTAGAGAATG 187
Query 180 GACAAGTTTTGAATATACATTGCAAATCCAGTGAGGATGATTTGGGGCATATCCGTCTTA 239
|| ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 188 GAGAAGAGTTGAATATACATTGCAAATCTAGTGAGGATGATTTGGGGCATATCCATCTTA 247
Query 240 AACATGGGGATACTTGGGGTTTCAGATTTCGTGTTAACATGGCACTAA-CTACGAGATTT 298
||||||| ||||||||| ||||||||||| |||||||||| || || |||| | ||||
Sbjct 248 AACATGGACATACTTGGGATTTCAGATTTCATGTTAACATGTCAA-AATCTACAAAATTT 306
Query 299 CGTTGTCACTTTTGGTGGTATGCACGCG--ACC-ATCTAGGCCATTATAGTTACTGGTTT 355
|||||||| ||||||||||||||| ||| ||| || || ||| | ||||||||||
Sbjct 307 CGTTGTCATTTTTGGTGGTATGCAGGCGGTACCGAT-TATT---TTA-A-TTACTGGTTT 360
Query 356 GATATATTTACTGTATACAGAGACGATAATCCATTTGGAAAATATCCAATTTGCGATGAA 415
|||||||||| |||| |||||||||||| |||| |||| |||||| ||||| | |||
Sbjct 361 GATATATTTAAAGTATCCAGAGACGATAAACCATCGGGAAGGTATCCAGTTTGCAAAGAA 420
Query 416 TGCGTTTGGAA-TATGTACGAATTAAG--T--GAAAACTTTATTTGTCGTATAAATCGTG 470
||| ||||| | | | || ||| | | | ||| || |||||||||||||||||||||
Sbjct 421 TGCATTTGGGAGT-TAAACCAAT-ACGGCTCTGAAGACATTATTTGTCGTATAAATCGTG 478
Query 471 ATCAATCTGGAT----GGTGTTTTAAAATGGACAGAGAAAA-TTAAGAAGAA 517
|| ||| | || ||||||| | ||||||| || ||| ||||||||||
Sbjct 479 ATGGATCAG-ATCCTTGGTGTTTCACAATGGAC-GATAAACCTTAAGAAGAA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21748685730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5