BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55680.1 Length=552 Score E Sequences producing significant alignments: (Bits) Value Ahg324090 jgi|Araly1|324090|fgenesh1_pm.C_scaffold_5001634 837 0.0 Ahg942876 jgi|Araly1|942876|scaffold_603420.1 274 5e-73 > Ahg324090 jgi|Araly1|324090|fgenesh1_pm.C_scaffold_5001634 Length=552 Score = 837 bits (453), Expect = 0.0 Identities = 519/552 (94%), Gaps = 0/552 (0%) Strand=Plus/Plus Query 1 ATGGCCTCAATGCTCATCAAACACTTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTTC 60 |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1 ATGGCCACAATGCTCATCAAACACTTAACTTTTTCTTTGTCGTTGTTAGTATTCGTGTTC 60 Query 61 TTTGCGTTTACAGTCGCAGATGCGATGTCTATCAAGGACATGTACGCATTTTGCAAGGAT 120 |||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| Sbjct 61 TTTGCGTTTACAGTCGTAGATGCGATGCCTATCAAAGACATGTACGCATTTTGCAAGGAT 120 Query 121 ACAGATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCA 180 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACGGATGACGTGAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCA 180 Query 181 CGCGACCTCCATGATGTGCTTGTTATTGCAATTTCTCAATGCCAAATCCAATTGACCAAG 240 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 181 CGCGACCTCCATGATGTGCTTGTAATTGCAATTTCTCAATGCCAAATCCAATTGACCAAC 240 Query 241 GCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTCGACGA 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 GCAACCAAACAAATCAACAAAGTTCGTCAAAAGTTTAGTGGTCCGATTGGGACTCGACGA 300 Query 301 CTCTATTTTTGCGGAAAGCACTACTGTTTAGCGTCTGCTTTCTTCCAAAAGGCTTATGAA 360 |||||||||||||||||| ||||| |||||| |||||| |||||||| ||||||||| Sbjct 301 CTCTATTTTTGCGGAAAGTACTACAAACTAGCGTGTGCTTTGTTCCAAAAAGCTTATGAA 360 Query 361 GAAGCACAAGAAGAAGGGCTCGAGTCCATAGCTCAGCTTTCTGCAGTGGATGGCTCACAC 420 ||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||| Sbjct 361 GAAGCACAAGAAGAAGGGCTCGAATCCATAGCTCTGTTTTCTGCAGTGGATGGTTCACAC 420 Query 421 TATATGTTCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTC 480 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TATATGATCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTC 480 Query 481 ACTTTCTATTATACAAATGTTGTCGAATTGTTATCAATCATTCAGGTTATTATCGAAAAG 540 ||||||||| | |||||||||||| |||| ||||| || ||||| ||||||||||||||| Sbjct 481 ACTTTCTATAACACAAATGTTGTCAAATTATTATCTATTATTCACGTTATTATCGAAAAG 540 Query 541 ATGTATGGCTAG 552 ||||||||||| Sbjct 541 TTGTATGGCTAG 552 > Ahg942876 jgi|Araly1|942876|scaffold_603420.1 Length=593 Score = 274 bits (148), Expect = 5e-73 Identities = 402/520 (77%), Gaps = 36/520 (7%) Strand=Plus/Plus Query 1 ATGGCCTCAATGCTCATCAAACAC-TTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTT 59 |||||| ||||| ||||||||||| | | ||| |||| |||||||||| || || |||| Sbjct 21 ATGGCCACAATGTTCATCAAACACATCATGTTT-CCTTTGTCGTTGTTATTACTCTTGTT 79 Query 60 CTTTGCGTTTAC-AGTCGCAGATGCGATGTC-TATCAAGGACATGTACGCATTTTGCAAG 117 | |||||| | | | | || | |||||| | |||||| |||||||| ||||||||||| Sbjct 80 CATTGCGTCTCCAACT-ACAAACGCGATG-CTTATCAAAGACATGTATACATTTTGCAAG 137 Query 118 GATACAG-ATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGC 176 || |||| | || || |||||||||||||||||||||||||||||| |||||| ||||| Sbjct 138 GAGACAGCA-GATGTGGACTTCTGCTTGAAATACATTGGAACGGACAAACGTATATTAGC 196 Query 177 CGCACGCGACCTCCATGATGTGCTTGTT-ATTGCAATTTCTCAATGCCAAATCCAATTGA 235 |||| ||| || | || || ||| || ||||| ||||||| ||| |||||||| ||| Sbjct 197 CGCAAAAGACTTCAACGACGTTCTT-TTAATTGCGTTTTCTCAGTGCAAAATCCAAGTGA 255 Query 236 CCAAGGCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTC 295 | ||||||||||||||||||||||||| || ||||| ||||||||||||| ||||| Sbjct 256 GCGAGGCAACCAAACAAATCAACAAAGTCCGTCAAAACTTTAGTGGTCCGAATGGGAAAA 315 Query 296 GACGACTCTATTTTTGCG-GA-AAGCACTACTGTT-TAGCGTCTGCTTTCTTCCAA-AAG 351 ||||| || | ||| | || || |||| || |||| || ||||| ||| | ||| Sbjct 316 GACGAATCAAACGTTGTGAGATAA--ACTA-TGGGCTAGCTTCAGCTTTATTCGATGAAG 372 Query 352 GCTTATGAAGA-AGCACA-AG-AAGAAGGGCT-CGAGTCCATAGCTCAGCTTT-CTGCAG 406 |||||||| | || | | | || ||||| | | | | | |||||| | | | ||| Sbjct 373 -CTTATGAA-ATAGGA-ATACTAA-AAGGGGTACAAAACAA-AGCTCA-CAATGCCGCAT 426 Query 407 TGGATGGCTCACACTATATGT-T-CAAATGCGAAGATGAATGGAAAAAT-AATGGACC-G 462 ||||||||| | ||||| || | || |||||||| |||||||| | | ||||| || | Sbjct 427 TGGATGGCTTAGACTATGTGCGTGCA--TGCGAAGACGAATGGAAGA-TCAATGGTCCAG 483 Query 463 ATACAAAAGTCTCCTTTCACTTTCTATTATACAAATGTTG 502 |||||||||||||| ||||||||||| | |||||| ||| Sbjct 484 -TACAAAAGTCTCCTCTCACTTTCTATAACACAAATATTG 522 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20146150992 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5