BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55680.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324090 jgi|Araly1|324090|fgenesh1_pm.C_scaffold_5001634 837 0.0
Ahg942876 jgi|Araly1|942876|scaffold_603420.1 274 5e-73
> Ahg324090 jgi|Araly1|324090|fgenesh1_pm.C_scaffold_5001634
Length=552
Score = 837 bits (453), Expect = 0.0
Identities = 519/552 (94%), Gaps = 0/552 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTCAATGCTCATCAAACACTTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTTC 60
|||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1 ATGGCCACAATGCTCATCAAACACTTAACTTTTTCTTTGTCGTTGTTAGTATTCGTGTTC 60
Query 61 TTTGCGTTTACAGTCGCAGATGCGATGTCTATCAAGGACATGTACGCATTTTGCAAGGAT 120
|||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 61 TTTGCGTTTACAGTCGTAGATGCGATGCCTATCAAAGACATGTACGCATTTTGCAAGGAT 120
Query 121 ACAGATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCA 180
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGGATGACGTGAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGCCGCA 180
Query 181 CGCGACCTCCATGATGTGCTTGTTATTGCAATTTCTCAATGCCAAATCCAATTGACCAAG 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CGCGACCTCCATGATGTGCTTGTAATTGCAATTTCTCAATGCCAAATCCAATTGACCAAC 240
Query 241 GCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTCGACGA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCAACCAAACAAATCAACAAAGTTCGTCAAAAGTTTAGTGGTCCGATTGGGACTCGACGA 300
Query 301 CTCTATTTTTGCGGAAAGCACTACTGTTTAGCGTCTGCTTTCTTCCAAAAGGCTTATGAA 360
|||||||||||||||||| ||||| |||||| |||||| |||||||| |||||||||
Sbjct 301 CTCTATTTTTGCGGAAAGTACTACAAACTAGCGTGTGCTTTGTTCCAAAAAGCTTATGAA 360
Query 361 GAAGCACAAGAAGAAGGGCTCGAGTCCATAGCTCAGCTTTCTGCAGTGGATGGCTCACAC 420
||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||
Sbjct 361 GAAGCACAAGAAGAAGGGCTCGAATCCATAGCTCTGTTTTCTGCAGTGGATGGTTCACAC 420
Query 421 TATATGTTCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTC 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATATGATCAAATGCGAAGATGAATGGAAAAATAATGGACCGATACAAAAGTCTCCTTTC 480
Query 481 ACTTTCTATTATACAAATGTTGTCGAATTGTTATCAATCATTCAGGTTATTATCGAAAAG 540
||||||||| | |||||||||||| |||| ||||| || ||||| |||||||||||||||
Sbjct 481 ACTTTCTATAACACAAATGTTGTCAAATTATTATCTATTATTCACGTTATTATCGAAAAG 540
Query 541 ATGTATGGCTAG 552
|||||||||||
Sbjct 541 TTGTATGGCTAG 552
> Ahg942876 jgi|Araly1|942876|scaffold_603420.1
Length=593
Score = 274 bits (148), Expect = 5e-73
Identities = 402/520 (77%), Gaps = 36/520 (7%)
Strand=Plus/Plus
Query 1 ATGGCCTCAATGCTCATCAAACAC-TTAACTTTGCCTTCGTCGTTGTTAGTATTCGTGTT 59
|||||| ||||| ||||||||||| | | ||| |||| |||||||||| || || ||||
Sbjct 21 ATGGCCACAATGTTCATCAAACACATCATGTTT-CCTTTGTCGTTGTTATTACTCTTGTT 79
Query 60 CTTTGCGTTTAC-AGTCGCAGATGCGATGTC-TATCAAGGACATGTACGCATTTTGCAAG 117
| |||||| | | | | || | |||||| | |||||| |||||||| |||||||||||
Sbjct 80 CATTGCGTCTCCAACT-ACAAACGCGATG-CTTATCAAAGACATGTATACATTTTGCAAG 137
Query 118 GATACAG-ATGACGTCAACTTCTGCTTGAAATACATTGGAACGGACATACGTATCTTAGC 176
|| |||| | || || |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 138 GAGACAGCA-GATGTGGACTTCTGCTTGAAATACATTGGAACGGACAAACGTATATTAGC 196
Query 177 CGCACGCGACCTCCATGATGTGCTTGTT-ATTGCAATTTCTCAATGCCAAATCCAATTGA 235
|||| ||| || | || || ||| || ||||| ||||||| ||| |||||||| |||
Sbjct 197 CGCAAAAGACTTCAACGACGTTCTT-TTAATTGCGTTTTCTCAGTGCAAAATCCAAGTGA 255
Query 236 CCAAGGCAACCAAACAAATCAACAAAGTTCGCCAAAAGTTTAGTGGTCCGATTGGGACTC 295
| ||||||||||||||||||||||||| || ||||| ||||||||||||| |||||
Sbjct 256 GCGAGGCAACCAAACAAATCAACAAAGTCCGTCAAAACTTTAGTGGTCCGAATGGGAAAA 315
Query 296 GACGACTCTATTTTTGCG-GA-AAGCACTACTGTT-TAGCGTCTGCTTTCTTCCAA-AAG 351
||||| || | ||| | || || |||| || |||| || ||||| ||| | |||
Sbjct 316 GACGAATCAAACGTTGTGAGATAA--ACTA-TGGGCTAGCTTCAGCTTTATTCGATGAAG 372
Query 352 GCTTATGAAGA-AGCACA-AG-AAGAAGGGCT-CGAGTCCATAGCTCAGCTTT-CTGCAG 406
|||||||| | || | | | || ||||| | | | | | |||||| | | | |||
Sbjct 373 -CTTATGAA-ATAGGA-ATACTAA-AAGGGGTACAAAACAA-AGCTCA-CAATGCCGCAT 426
Query 407 TGGATGGCTCACACTATATGT-T-CAAATGCGAAGATGAATGGAAAAAT-AATGGACC-G 462
||||||||| | ||||| || | || |||||||| |||||||| | | ||||| || |
Sbjct 427 TGGATGGCTTAGACTATGTGCGTGCA--TGCGAAGACGAATGGAAGA-TCAATGGTCCAG 483
Query 463 ATACAAAAGTCTCCTTTCACTTTCTATTATACAAATGTTG 502
|||||||||||||| ||||||||||| | |||||| |||
Sbjct 484 -TACAAAAGTCTCCTCTCACTTTCTATAACACAAATATTG 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5