BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55690.1 Length=1246 Score E Sequences producing significant alignments: (Bits) Value Ahg938515 jgi|Araly1|938515|scaffold_502706.1 1256 0.0 > Ahg938515 jgi|Araly1|938515|scaffold_502706.1 Length=916 Score = 1256 bits (680), Expect = 0.0 Identities = 845/923 (92%), Gaps = 18/923 (2%) Strand=Plus/Plus Query 44 TGTCTTTACTCATTGTCGTTATGGTCGCGCCGCCTATAGCCGCCGCGTCGTTAGAGCTCC 103 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 1 TGTCTTTACTCATTGTCGTTATGGTCGCGCCGCCTATATCCGCCGCGTCCTTAGAGCTCC 60 Query 104 CTCCTCCGTTCCCCGCCGTCTTCGAACAACCAATGGAGAAACTCACCTTCCCTAACGAGT 163 ||||||| ||||||||||||||||||||||||||||||||| ||| |||||| || |||| Sbjct 61 CTCCTCCTTTCCCCGCCGTCTTCGAACAACCAATGGAGAAATTCAGCTTCCCGAATGAGT 120 Query 164 TCCCTTACGAGTTTGCCTCCTCAACGTTTTCAACTTCTCCGGAAGACTCAACGGAGACAG 223 ||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| | Sbjct 121 TCCCTTACGAGTTTG---CCTCAACGTTTTCCACTTCTCCAGAAGACTCAACGGAGACGG 177 Query 224 AAGATGAAACAACCGACGACGAAGATGACTTCTTAGCCGGGTTAACTCGCAGACTCGCTC 283 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 178 AAGATGAAACAAGCGACGACGAAGATGACTTCTTAGCCGGGTTAACTCGAAGACTCGCTC 237 Query 284 TCTCGACTCAGCGCCTCTCTTCTCCTTCCTTCGTCACCGACAAGTCTCAGATGAAACCCA 343 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 238 TCTCGACTCAGCGCCTCTCTTCTCCTTCCTTCGTCGCCGACAAGTCTCAGATGAAACCTA 297 Query 344 AAGTCACAGAGTCAACTCAGAGTGGACTCGGAAGTCCTAATGGTCCGTTTTCTCAAGTTC 403 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 298 AAGTCACCGAGTCAACTCAGAGTGGACTCGGAAGTCCTAATGGACCGTTTTCTCAAGCTC 357 Query 404 CTTCACCGCCGACATCTCCGTCTCGTGAAGAAGACTCTTTGAAAGTGTTATCTGCTGCAG 463 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 358 CTTCACCGCCGACATCTCCGTTTCGTGAAGAAGACTCTTTGAAAGTGTTATCTGCTGCAG 417 Query 464 CTGGAGAAGTCGCCAAGATCAAAAAGGCCAATTTTGATGCTAAACCCATCAGCTACCCAA 523 |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| Sbjct 418 CTGGAGAAGTCGCCAAGATCAAAAAGGCTAACTTTGATGCTAAACCCATCAGCCGCCCAA 477 Query 524 ACCCTAACCCTAATTACTTAA-CCAGCTTT-CCTCAAAACGTGGCATATTATAACTGCTA 581 |||||||||||| || ||||| || |||| |||||||||| || | |||||||| ||| Sbjct 478 ACCCTAACCCTAGTTCCTTAATCC--CTTTTCCTCAAAACGCAGCGTTTTATAACTACTA 535 Query 582 CTGGTTATGGGAGCCGCATTATCCTCAATCTCAGATGGGAATAGTTCCAAATGCTTGGCA 641 |||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 536 CTGGCTATGGCAGCCGCATTATCATCAATCTCAGATGGGAATAGTCCCAAATGCTTGGCT 595 Query 642 TATACCTCCTTCTCCCGTTAGAGCCTTTTACACC-CTTCCAACCGCCGTTAAATCGCCGT 700 | | |||||||||||||||||| | | |||||| || ||||||||||| |||||||||| Sbjct 596 TGTGTCTCCTTCTCCCGTTAGAGGCGTATACACCGCT-CCAACCGCCGTCAAATCGCCGT 654 Query 701 CGACTGGTACCGGCGTTTTCCTTCCCCGGAAATACTCAAACCCTTCTGATTCCCCGAAGA 760 | ||||||||||| || |||||||||||||||||||||| |||||| ||||||| | || Sbjct 655 CTACTGGTACCGGTGTGTTCCTTCCCCGGAAATACTCAATCCCTTCCGATTCCC-G--GA 711 Query 761 AGAAATCAGGAGATGGATGTGTTAAGGTTGTTAACCAGCAAAAACCTAAAATTGAAGTGT 820 |||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| || Sbjct 712 AGAATTCAGGAGGTGGATGTGGTAAGGTTATTAACCAACAAAAACCTAAAATTGAAGAGT 771 Query 821 TACCGGTTCGCTGTAAACCAAATTCGAAAGCTGGTCTCTCTACAGGACGCAGCAAAATCG 880 || ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 772 TATCGGGTCGGTGTAAACCAAATTCGAAAGCTGGTCCCTCTACAGGACGCAGCAAAA-CG 830 Query 881 -ATTACGTAGCTGGTGGTGGATGTCTGAAGCATGAAA-AGCCTCTTCTACAAGAATGGAT 938 ||||||||||||||||||| ||| ||||||| |||| | ||||||| |||||||||||| Sbjct 831 GATTACGTAGCTGGTGGTGGTTGTTTGAAGCAAGAAAGA-CCTCTTCCACAAGAATGGAT 889 Query 939 GTACTGAG--TTTGAATTAGGTT 959 |||||||| ||||||||||||| Sbjct 890 GTACTGAGAGTTTGAATTAGGTT 912 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46548081657 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5