BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55690.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938515 jgi|Araly1|938515|scaffold_502706.1 1256 0.0
> Ahg938515 jgi|Araly1|938515|scaffold_502706.1
Length=916
Score = 1256 bits (680), Expect = 0.0
Identities = 845/923 (92%), Gaps = 18/923 (2%)
Strand=Plus/Plus
Query 44 TGTCTTTACTCATTGTCGTTATGGTCGCGCCGCCTATAGCCGCCGCGTCGTTAGAGCTCC 103
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1 TGTCTTTACTCATTGTCGTTATGGTCGCGCCGCCTATATCCGCCGCGTCCTTAGAGCTCC 60
Query 104 CTCCTCCGTTCCCCGCCGTCTTCGAACAACCAATGGAGAAACTCACCTTCCCTAACGAGT 163
||||||| ||||||||||||||||||||||||||||||||| ||| |||||| || ||||
Sbjct 61 CTCCTCCTTTCCCCGCCGTCTTCGAACAACCAATGGAGAAATTCAGCTTCCCGAATGAGT 120
Query 164 TCCCTTACGAGTTTGCCTCCTCAACGTTTTCAACTTCTCCGGAAGACTCAACGGAGACAG 223
||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 121 TCCCTTACGAGTTTG---CCTCAACGTTTTCCACTTCTCCAGAAGACTCAACGGAGACGG 177
Query 224 AAGATGAAACAACCGACGACGAAGATGACTTCTTAGCCGGGTTAACTCGCAGACTCGCTC 283
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 AAGATGAAACAAGCGACGACGAAGATGACTTCTTAGCCGGGTTAACTCGAAGACTCGCTC 237
Query 284 TCTCGACTCAGCGCCTCTCTTCTCCTTCCTTCGTCACCGACAAGTCTCAGATGAAACCCA 343
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 238 TCTCGACTCAGCGCCTCTCTTCTCCTTCCTTCGTCGCCGACAAGTCTCAGATGAAACCTA 297
Query 344 AAGTCACAGAGTCAACTCAGAGTGGACTCGGAAGTCCTAATGGTCCGTTTTCTCAAGTTC 403
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 298 AAGTCACCGAGTCAACTCAGAGTGGACTCGGAAGTCCTAATGGACCGTTTTCTCAAGCTC 357
Query 404 CTTCACCGCCGACATCTCCGTCTCGTGAAGAAGACTCTTTGAAAGTGTTATCTGCTGCAG 463
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTCACCGCCGACATCTCCGTTTCGTGAAGAAGACTCTTTGAAAGTGTTATCTGCTGCAG 417
Query 464 CTGGAGAAGTCGCCAAGATCAAAAAGGCCAATTTTGATGCTAAACCCATCAGCTACCCAA 523
|||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 418 CTGGAGAAGTCGCCAAGATCAAAAAGGCTAACTTTGATGCTAAACCCATCAGCCGCCCAA 477
Query 524 ACCCTAACCCTAATTACTTAA-CCAGCTTT-CCTCAAAACGTGGCATATTATAACTGCTA 581
|||||||||||| || ||||| || |||| |||||||||| || | |||||||| |||
Sbjct 478 ACCCTAACCCTAGTTCCTTAATCC--CTTTTCCTCAAAACGCAGCGTTTTATAACTACTA 535
Query 582 CTGGTTATGGGAGCCGCATTATCCTCAATCTCAGATGGGAATAGTTCCAAATGCTTGGCA 641
|||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 536 CTGGCTATGGCAGCCGCATTATCATCAATCTCAGATGGGAATAGTCCCAAATGCTTGGCT 595
Query 642 TATACCTCCTTCTCCCGTTAGAGCCTTTTACACC-CTTCCAACCGCCGTTAAATCGCCGT 700
| | |||||||||||||||||| | | |||||| || ||||||||||| ||||||||||
Sbjct 596 TGTGTCTCCTTCTCCCGTTAGAGGCGTATACACCGCT-CCAACCGCCGTCAAATCGCCGT 654
Query 701 CGACTGGTACCGGCGTTTTCCTTCCCCGGAAATACTCAAACCCTTCTGATTCCCCGAAGA 760
| ||||||||||| || |||||||||||||||||||||| |||||| ||||||| | ||
Sbjct 655 CTACTGGTACCGGTGTGTTCCTTCCCCGGAAATACTCAATCCCTTCCGATTCCC-G--GA 711
Query 761 AGAAATCAGGAGATGGATGTGTTAAGGTTGTTAACCAGCAAAAACCTAAAATTGAAGTGT 820
|||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| ||
Sbjct 712 AGAATTCAGGAGGTGGATGTGGTAAGGTTATTAACCAACAAAAACCTAAAATTGAAGAGT 771
Query 821 TACCGGTTCGCTGTAAACCAAATTCGAAAGCTGGTCTCTCTACAGGACGCAGCAAAATCG 880
|| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 772 TATCGGGTCGGTGTAAACCAAATTCGAAAGCTGGTCCCTCTACAGGACGCAGCAAAA-CG 830
Query 881 -ATTACGTAGCTGGTGGTGGATGTCTGAAGCATGAAA-AGCCTCTTCTACAAGAATGGAT 938
||||||||||||||||||| ||| ||||||| |||| | ||||||| ||||||||||||
Sbjct 831 GATTACGTAGCTGGTGGTGGTTGTTTGAAGCAAGAAAGA-CCTCTTCCACAAGAATGGAT 889
Query 939 GTACTGAG--TTTGAATTAGGTT 959
|||||||| |||||||||||||
Sbjct 890 GTACTGAGAGTTTGAATTAGGTT 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5