BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55700.1
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486004 jgi|Araly1|486004|fgenesh2_kg.5__1996__AT3G55700.1 1986 0.0
Ahg486005 jgi|Araly1|486005|fgenesh2_kg.5__1997__AT3G55710.1 1720 0.0
Ahg898513 jgi|Araly1|898513|Al_scaffold_0005_2479 1447 0.0
Ahg485040 jgi|Araly1|485040|fgenesh2_kg.5__1032__AT3G46670.1 76.8 4e-13
> Ahg486004 jgi|Araly1|486004|fgenesh2_kg.5__1996__AT3G55700.1
Length=1526
Score = 1986 bits (1075), Expect = 0.0
Identities = 1339/1466 (91%), Gaps = 20/1466 (1%)
Strand=Plus/Plus
Query 62 aaaaaaaaaCAAAGTC-AGTAAGAAAAATGGAAGAGAGAAAAGGGAGGAGAATAATCATG 120
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 36 AAAAAAAAACAAAGTCAAG-AAGAAAAATGGAAGAGAGAAGAGGGAGGAGAATAATCATG 94
Query 121 TTCCCTCTTCCATTTCCAGGG-CACTTCAACCCCATGATCGAGCTCGCTGGAATATTCCA 179
|||||||| |||||| | ||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 95 TTCCCTCTACCATTTGC-GGGACACTTCAACCCGATGATCGAGCTTGCTGGAATATTCCA 153
Query 180 CCACCGTGGCTTCTCCGTGACGATCCTCCACACTTCCTACAACTTCCCCGATCCTTCTCG 239
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 154 CCACCGTGGCTTCTCCGTCACGATCCTCCACACTTCCTACAACTTTCCCGATCCTTCTCG 213
Query 240 CCACCCACACTTCACTTTTCGAACCATCTCTCACAACAAAGAAGGAGAAGAAGATCCTCT 299
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 214 CCACCCTCACTTCACTTTTCGATCCATCCCTCACAACAAAGAAGGAGAAGAAGACCCTCT 273
Query 300 GTCTCAGTCAGAAACTTCGAGTATGGACCTAATCGTTCTCGTTCGTCGGCTGAAACAACG 359
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |
Sbjct 274 ATCTCAGTCAGAAACTTCGAGTATGGACCTCATCGTTCTCATGCGTCGGCTGAAACAATG 333
Query 360 CTACGCCGA-ACCGTTTCGTAAGTCTGTGGCGGCGGAAGTAGGTGGAGGAGAGACGGTGT 418
||||||||| | |||||||| ||||| |||| | |||||||||||||||||||||| |||
Sbjct 334 CTACGCCGAGA-CGTTTCGTCAGTCTTTGGCAGAGGAAGTAGGTGGAGGAGAGACGATGT 392
Query 419 GTTGTTTGGTCTCCGACGCTATATGGGGGAAGAACACGGAGGTTGTAGCGGAAGAGATTG 478
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 393 GTTGTTTGGTCTCCGACGCTATATGGGGAAAGATCTCGGAGGTTGTAGCGGAAGAGATTG 452
Query 479 GAGTTCGTAGGGTGGTGTTGAGGACAGGTGGTGCGTCGTCGTTTTGTGCTTTTGCCGCTT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GAGTTCGTAGGGTGGTGTTGAGGACAGGTGGTGCGTCGTCGTTTTGTGCTTTTGCCGCTT 512
Query 539 TCCCTCTCCTTAGGGATAAGGGTTACCTCCCTATACAAGATTCTAGATTAGATGAGCCAG 598
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 513 ACCCTCTGCTTAGGGATAAGGGATACCTCCCTATACAAGATTCTAGATTAGATGAGCTAG 572
Query 599 TGACAGAGCTTCCACCTTTGAAAGTGAAGGATCTTCCGGTAATGGAAACGAATGAGCCGG 658
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 573 TGACAGAGCTTCCACCTTTGAAAGTTAAAGATCTTCCGGTAATGGAAACGAAAGAGCCGG 632
Query 659 AGGAACTTTACCGGGTAGTTAACGACATGGTGGAAGGAGCCAAGTCTTCTTCAGGAGTCA 718
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 633 AGGAACTTTACCGGGTAGTTAACGATATGGTGGAAGGAGCCAAGTCTTCTTCAGGAGTCA 692
Query 719 TATGGAACACATTTGAAGATCTTGAAAGACTATCACTTATGAATTGTAGCAGCAAATTAC 778
||||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||| ||||
Sbjct 693 TATGGAACACATTTGAAGATCTTGAAAGACTCTCACTCATGGATTGTAGCAACAAGTTAC 752
Query 779 AAGTTCCATTTTTCCCGATCGGACCGTTTCACAAATATAGCGAAGATCCTACACCGAAGA 838
||||||| |||||||| |||||||||||||||||| ||||||| |||| | ||| |||||
Sbjct 753 AAGTTCCGTTTTTCCCAATCGGACCGTTTCACAAACATAGCGACGATCATCCACTGAAGA 812
Query 839 CAGAGAACAAGGA--A-GATAC--CGA--T-T-GGCTCGACAAGCAAGACCCACAGTCGG 889
|| |||||||||| | |||| | | | | |||| ||||||||||| |||||||| |
Sbjct 813 CAAAGAACAAGGACGACGATAAAACAACCTGTTGGCTTGACAAGCAAGATCCACAGTCTG 872
Query 890 TGGTCTATGCGAGTTTCGGAAGCCTTGCAGCTATAGAAGAGAAGGAGTTTCTCGAGATTG 949
| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TAGTCTACGTGAGTTTTGGAAGCCTTGCAGCTATAGAAGAGAAGGAGTTTCTCGAGATTG 932
Query 950 CTTGGGGTCTAAGAAACAGTGAACGACCGTTTTTGTGGGTGGTTAGGCCGGGGTCTG-TC 1008
|||||||||||||||||||| || ||| || ||||||||||||||||| ||| || ||
Sbjct 933 CTTGGGGTCTAAGAAACAGTAAATTACCATTCTTGTGGGTGGTTAGGCCAGGGA-TGGTC 991
Query 1009 AGGGGGACCGAGTGGCTCGAGTCATTGCCTT-TAGGGTTTATGGAAAACATTGGAGATAA 1067
| |||||||||||||| ||||||||||||| | |||||| ||||| ||||||| ||||
Sbjct 992 CGAGGGACCGAGTGGCTTGAGTCATTGCCTTGT-GGGTTTTTGGAAGACATTGGTCATAA 1050
Query 1068 GGGAAAAATCGTGAAATGGGCGAATCAGTTAGAGGTATTGGCGCATCCTGCCATTGGAGC 1127
||||||||| |||||||||| |||||| ||||||| ||||||||||||||| |||||||
Sbjct 1051 GGGAAAAATTGTGAAATGGGTGAATCAACTAGAGGTTTTGGCGCATCCTGCCGTTGGAGC 1110
Query 1128 GTTTTGGACACATTGTGGATGGAACTCGACACTAGAGAGCATATGTGAAGGTGTTCCTAT 1187
||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1111 GTTTTGGACGCACTGCGGATGGAACTCAACACTAGAGAGCATATGTGAAGGTGTTCCAAT 1170
Query 1188 GATATGTACGTCATGTTTCACGGACCAGCATGTGAACGCGAGATACATCGTTGATGTATG 1247
|||||||||| | |||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 1171 GATATGTACGCCGTGTTTCTCAGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATG 1230
Query 1248 GCGAGTCGGGATGTTGTTAGAGAGAAGTAAGATGGAAAAGAAGGAGATTGAAAAGGTGCT 1307
||||||||| ||| |||||||||||||||||||||||| |||||||||||| || | ||
Sbjct 1231 GCGAGTCGGTATGGTGTTAGAGAGAAGTAAGATGGAAATGAAGGAGATTGAGAATGCACT 1290
Query 1308 AAGAAGTGTAATGATGGAGAAGGGAGATGGATTGAGGGAAAGGAGTTTGAAGTTGAAAGA 1367
||||||||||||||||||||||||||||| |||||| || |||||| ||||||| |||||
Sbjct 1291 AAGAAGTGTAATGATGGAGAAGGGAGATGAATTGAGAGAGAGGAGTCTGAAGTTAAAAGA 1350
Query 1368 GAGAGCTGATTTTTGCTTAAGTAAAGATGGGTCTTCTTCCAAGTATTTAGACAAACTTGT 1427
||| |||||||||||||||| ||||||||| ||||| |||||| ||||||| ||||||||
Sbjct 1351 GAGTGCTGATTTTTGCTTAACTAAAGATGGATCTTCGTCCAAGAATTTAGAAAAACTTGT 1410
Query 1428 GAGTCATGTCCTGTCTTTTGATTCTTATGCTTTTGCAAGTTAAGAAAACTTATGAATGAG 1487
||||||||||||||||||| |||||||||||||||||||||| ||||| | |||||||||
Sbjct 1411 GAGTCATGTCCTGTCTTTTAATTCTTATGCTTTTGCAAGTTA-GAAAAATCATGAATGAG 1469
Query 1488 TAACGTATTCTAAGCACTCTCCAAAA 1513
||| |||||||||||||||| |||||
Sbjct 1470 TAATGTATTCTAAGCACTCTTCAAAA 1495
> Ahg486005 jgi|Araly1|486005|fgenesh2_kg.5__1997__AT3G55710.1
Length=1417
Score = 1720 bits (931), Expect = 0.0
Identities = 1253/1406 (89%), Gaps = 31/1406 (2%)
Strand=Plus/Plus
Query 88 ATGGAAGAGAGAAAAGGGAGGAGAATAATCATGTTCCCTCTTCCATTTCCAGGG-CACTT 146
||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||
Sbjct 1 ATGGAAGAGAGAAAAGGGAGGAGAATAATCATGTTCCCTCTACCATTTAC-GGGACACTT 59
Query 147 CAACCCCATGATCGAGCTCGCTGGAATATTCCACCACCGTGGCTTCTCCGTGACGATCCT 206
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 CAACCCGATGATCGAGCTTGCTGGAATATTCCACCACCGTGGCTTCTCCGTCACGATCCT 119
Query 207 CCACACTTCCTACAACTTCCCCGATCCTTCTCGCCACCCACACTTCACTTTTCGAACCAT 266
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 120 CCACACTTCCTACAACTTCCCTGATCCTTCTCGCCATCCACACTTCACTTTTCGAACCAT 179
Query 267 CTCTCAC-AACAAAGAAGGAGAAGAAGATCCTCTGTCTCAGTCAGA-A--ACTTCGAGTA 322
| ||||| || || |||||||||||||| ||||||||||| ||||| | ||||| |||
Sbjct 180 CACTCACGAA-AACGAAGGAGAAGAAGACCCTCTGTCTCAATCAGAGACGTCTTCGGGTA 238
Query 323 TGGACCTAATCGTTCTCGTTCGTCGGCTGAAACAACGCTACGCCGAACCGTTTCGTAAGT 382
|||||| |||| ||| || ||| |||||||||| |||| |||| |||||||| |||
Sbjct 239 AGGACCTTGTCGTCCTCATTAGTCTGCTGAAACAATGCTATACCGAGCCGTTTCGCCAGT 298
Query 383 CTGTGGCGGCGGAAGTAGGTGGAGGAGAGACGGTGTGTTGTTTGGTCTCCGACGCTATAT 442
|| | || |||||||||| ||||||| |||||||||||||||| |||| |||||| |||
Sbjct 299 CTCTTGCAGCGGAAGTAGCCGGAGGAGGGACGGTGTGTTGTTTGATCTCTGACGCTCTAT 358
Query 443 GGGGGAAGAACACGGAGGTTGTAGCGGAAGAGATTGGAGTTCGTAGGGTGGTGTTGAGGA 502
|||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 359 GGGGGAGGAACACCGAGGTTGTAGCGGAAGAGGTTGGAGTTCGTAGAATGGTGTTGAGGA 418
Query 503 CAGGTGGTG-CGTCGTCGTTTTGTGCTTTTGCCGCTTTCCCTCTCCTTAGGGATAAGGGT 561
||||||||| ||| ||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 419 CAGGTGGTGCCGT-ATCGTTTTGTGCTTATGCAGCTTTCCCTCTCCTTAGAGATAAGGGT 477
Query 562 TACCTCCCTATACAAGATTCTAGATTAGATGAGCCAGTGACAGAGCTTCCACCTTTGAAA 621
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 478 TACCTCCCTATACAAGATTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTAAAA 537
Query 622 GTGAAGGATCTTCCGGTAATGGAAACGAATGAGCCGGAGGAACTTTACCGGGTAGTTAAC 681
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 538 GTGAAGGATCTTCCGGTAATAGAAACAAAAGAGCCGGAGGAACTTTACCGGGTAGTTAAC 597
Query 682 GACATGGTGGAAGGAGCCAAGTCTTCTTCAGGAGTCATATGGAACACATTTGAAGATCTT 741
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 GACATGGTGGAAGGAGCCAAGTCTTCTTCAGGAGTCATATGGAACAGTTTTGAAGATCTT 657
Query 742 GAAAGACTATCACTTATGAATTGTAGCAGCAAATTACAAGTTCCATTT-TTCCCGATCGG 800
|||||||| ||||| ||| ||| | ||||||| ||||||||||| ||| ||||| |||||
Sbjct 658 GAAAGACTCTCACTCATGGATTCTCGCAGCAAGTTACAAGTTCC-TTTCTTCCCTATCGG 716
Query 801 ACCGTTTCACAAATATAGCGAA-GATCCTACACCGAAGACAGAGAACAAGGA--A-GAT- 855
||||||||||||| || || || |||| | ||||||||||| |||||||||| | |||
Sbjct 717 ACCGTTTCACAAACATTGC-AACGATCTTCCACCGAAGACAAAGAACAAGGACGATGATG 775
Query 856 A--------CCGATTGGCTCGACAAGCAAGACCCACAGTCGGTGGTCTATGCGAGTTTCG 907
| |||||||||| |||||| |||| |||||||| |||||||||| |||||| |
Sbjct 776 AAATATTAACCGATTGGCTTGACAAGGAAGATCCACAGTCTGTGGTCTATGTGAGTTTTG 835
Query 908 GAAGCCTTGCAGCTATAGAAGAGAAGGAGTTTCTCGAGATTGCTTGGGGTCTAAGAAACA 967
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 836 GAAGCCTTGCAGCTATAGAAGAAAAGGAGTTTCTCGAGATTGCTTGGGGTCTAAAAAACA 895
Query 968 GTGAACGACCGTTTTTGTGGGTGGTTAGGCCGGGG-TC-TGTCAGGGGGACCGAGTGGCT 1025
| |||||||| || ||||||||||||||||||||| | || | | ||||||| ||||||
Sbjct 896 GCGAACGACCATTCTTGTGGGTGGTTAGGCCGGGGATGGTG-C-GAGGGACCGGGTGGCT 953
Query 1026 CGAGTCATTGCCTT-TAGGGTTTATGGAAAACATTGGAGATAAGGGAAAAATCGTGAAAT 1084
||||||||||||| | |||||| ||||||||||||| ||||||||||| | |||||||
Sbjct 954 TGAGTCATTGCCTTGT-GGGTTTTTGGAAAACATTGGTCATAAGGGAAAATTTGTGAAAT 1012
Query 1085 GGGCGAATCAGTTAGAGGTATTGGCGCATCCTGCCATTGGAGCGTTTTGGACACATTGTG 1144
||| |||||| ||||||||||||| ||||||||| |||||||||||||||| || || |
Sbjct 1013 GGGTGAATCAACTAGAGGTATTGGCTCATCCTGCCGTTGGAGCGTTTTGGACGCACTGCG 1072
Query 1145 GATGGAACTCGACACTAGAGAGCATATGTGAAGGTGTTCCTATGATATGTACGTCATGTT 1204
|||||||||| ||| ||||||||||||||||||| ||||| ||||| |||||| | ||||
Sbjct 1073 GATGGAACTCAACAATAGAGAGCATATGTGAAGGCGTTCCAATGATTTGTACGCCGTGTT 1132
Query 1205 TCACGGACCAGCATGTGAACGCGAGATACATCGTTGATGTATGGCGAGTCGGGATGTTGT 1264
|| ||||||||||||| ||||| || ||||| ||||||||||||||||| |||||| |||
Sbjct 1133 TCTCGGACCAGCATGTAAACGCTAGGTACATTGTTGATGTATGGCGAGTTGGGATGGTGT 1192
Query 1265 TAGAGAGAAGTAAGATGGAAAAGAAGGAGATTGAAAAGGTGCTAAGAAGTGTAATGATGG 1324
|||||||||| ||||| |||| |||||||||||| || | |||||||| |||||||||||
Sbjct 1193 TAGAGAGAAGCAAGATAGAAAGGAAGGAGATTGAGAATGCGCTAAGAATTGTAATGATGG 1252
Query 1325 AGAAGGGAGATGGATTGAGGGAAAGGAGTTTGAAGTTGAAAGAGAGAGCTGATTTTTGCT 1384
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGAAAGGAGATGGATTGAGAGAGAGGAGTTTGAAGTTGAAAGAGAGAGCTGATTTTTGCT 1312
Query 1385 TAAGTAAAGATGGGTCTTCTTCCAAGTATTTAGACAAACTTGTGAGTCATGTCCTGTCTT 1444
||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 1313 TAAGTAAAGATGGTTCTTCTTCCAAGTATCTAGATGAACTTGTCAGTCATGTCCTGTCTT 1372
Query 1445 TTGATTCTTATGCTTTTGCAAGTTAA 1470
||||||| || |||||||||||||||
Sbjct 1373 TTGATTCCTAGGCTTTTGCAAGTTAA 1398
> Ahg898513 jgi|Araly1|898513|Al_scaffold_0005_2479
Length=1392
Score = 1447 bits (783), Expect = 0.0
Identities = 1208/1409 (86%), Gaps = 45/1409 (3%)
Strand=Plus/Plus
Query 88 ATGGAAGAGAGAAAAGGGAGGAGAATAATCATGTTCCCTCTT-CCATTTCCAGGG-CACT 145
||||| |||||||||| ||||| |||||||||||||||| || || ||||| ||| ||||
Sbjct 1 ATGGATGAGAGAAAAGTGAGGAAAATAATCATGTTCCCT-TTACCGTTTCC-GGGACACT 58
Query 146 TCAACCCCATGATCGAGCTCGCTGGAATATTCCACCACCGTGGCTTCTCCGTGACGATCC 205
||||||| |||||| | ||||| |||||||||||||||||||||||||||| |||||||
Sbjct 59 TCAACCCAATGATCCAACTCGCCAGAATATTCCACCACCGTGGCTTCTCCGTCACGATCC 118
Query 206 TCCACACTTCCTACAACTTCCCC-GATCCTTCTCGCCACCCACACTTCACTTTTCGAACC 264
|||||||||| | |||| ||||| ||||||||| | |||||| ||||||||||||||||
Sbjct 119 TCCACACTTCATTCAAC-TCCCCAAATCCTTCTCACTACCCACTCTTCACTTTTCGAACC 177
Query 265 ATCTCTCACAACAAAGAAGGAGAAGAAGATCCTCTGTCTCAGTCAGAAACTTCGAGTATG 324
||| |||||||||| ||||||| ||||||||||||| |||| ||||| |||| ||||||
Sbjct 178 ATCCCTCACAACAACGAAGGAGGAGAAGATCCTCTGACTCAACCAGAAGCTTCTAGTATG 237
Query 325 GACCTAATCGTTC-TCGTTCGTCGGCTGAAAC-AACGCTACGCCGA-ACCGTTTCGTAAG 381
|| || ||| | | |||| | ||||| || ||| ||| || || | |||||||| ||
Sbjct 238 GATCTTGTCG-CCTTTATTCGACTGCTGAGACAAAC-CTATGCGGAGA-CGTTTCGTCAG 294
Query 382 TCTGTGGCGGCGGAAGTAGGTGGAGGAGAGACGGTGTGTTGTTTGGTCTCCGACGCTATA 441
||| ||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |
Sbjct 295 TCTCTGGCGGCGGAAGTAGGTGGAGGAGAGACGATGTGTTGTTTTGTCTCCGATGCTGTT 354
Query 442 TGGGGGAAGAACACGGAGGTTGTAGCGGAAGAGATTGGAGTTCGTAGGGTGGTGTTGAGG 501
|||| || |||||||||||| | ||| ||| || | ||||| ||||| || |||||||
Sbjct 355 TGGGCGAGGAACACGGAGGTCGCAGCCGAAAAGGTCGGAGTACGTAGAGTAGTGTTGATT 414
Query 502 ACAGGTGGTGCGTCGTCGTTTTGTGCTTTTGCCGCTTTCCCTCTCCTTAGGGATAAGGGT 561
||| |||||| | ||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct 415 ACAAGTGGTGTGGCGTCGTTTTGTGCTTTTGCTGCTTTCCCTCTCCTTAGAGATAAGCAT 474
Query 562 TACCTCCCTATACAAGATTCTAGATTAGATGAGCCAGTGACAGAGCTTCCACCTTTGAAA 621
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 475 TACCTCCCTATACAAGAATCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAAA 534
Query 622 GTGAAGGATCTTCCGGTAATGGAAACGAATGAGCCGGAGGAACTTTACCGGGTAGTTAAC 681
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 GTTAAGGATCTTCCGGTAATGGAAACGAATGAGCCGGAGGAACTATACCGGGTAGTTAAC 594
Query 682 GACATGGTGGAAGGAGCCAAGTCTTCTTCAGGAGTCATATGGAACACATTTGAAGATCTT 741
|| ||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 595 GATATGGTTAAAGGAGCCGAGTCTTCTTCAGGACTCATATGGAACACATTCGAAGATCTT 654
Query 742 GAAAGACTATCACTTATGAATTGTAGCAGCAAATTACAAGTTCC-ATTTTTCCCGATCGG 800
|||||||| ||||| ||| ||| ||| ||||| || |||||||| || || |||||| ||
Sbjct 655 GAAAGACTCTCACTCATGGATTTTAGGAGCAAGTTTCAAGTTCCCATATT-CCCGATTGG 713
Query 801 ACCGTTTCACAAATATAGCGAAGATCCTAC-ACCGAAGACAGAGAACAAGGAAGA---T- 855
||||||||||||| |||||||| ||| | | ||||| || | ||||||| ||||| |
Sbjct 714 ACCGTTTCACAAACATAGCGAAAATCTT-CTACCGATGATAAAGAACAAAGAAGACCATG 772
Query 856 -A-C--C-GATTGGCTCGACAAGCAAGA-CCCACAGTCGGTGGTCTATGCGAGTTTCGGA 909
| | | ||||||||| | |||||||| |||| |||| || ||||||| ||||| ||
Sbjct 773 TAACAACCGATTGGCTCAATAAGCAAGATCCCA-AGTCTGTAGTCTATGTAAGTTTTGGG 831
Query 910 AGCCTTGCAGCTATAGAAGAGAAGGAGTTTCTCGAGATTGCTTGGGGTCTAAGAAACAGT 969
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGCCTTGCAAATATAGAGGAGAAGGAGTTTCTCGAGATTGCTTGGGGTCTAAGAAACAGT 891
Query 970 GAACGACCGTTTTTGTGGGTGGTTAGGCCGGGGTCT-GTCAGGGGGACCGAGTGGCTCGA 1028
|||||||| |||||||||||||||||||| |||| | ||| | |||| |||||||| ||
Sbjct 892 GAACGACCCTTTTTGTGGGTGGTTAGGCCAGGGT-TAGTCCGAAGGACTGAGTGGCTGGA 950
Query 1029 -GTCATTGCCTTTAG-GG-TTTATGGAAAACATTGGAGATAAGGGAAAAATCGTGAAATG 1085
| |||||||| || || ||| ||||||||||||| | ||||||||| | || |||||
Sbjct 951 AG-CATTGCCT--AGTGGATTTGTGGAAAACATTGGCCAGAAGGGAAAATTTGTAAAATG 1007
Query 1086 GGCGAATCAGTTAGAGGTATTGGCGCATCCTGCCATTGGAGCGTTTTGGACACATTGTGG 1145
|| |||||| |||||||||||||||||| |||| |||| || |||||||| ||||||||
Sbjct 1008 GGTGAATCAATTAGAGGTATTGGCGCATTCTGCTGTTGGGGCATTTTGGACGCATTGTGG 1067
Query 1146 ATGGAACTCGACACTAGAGAGCATATGTGAAGGTGTTCCTATGATATGTACGTCATGTTT 1205
|||||||||||||||||| |||||||||||||||||||| ||||||||||| | |||||
Sbjct 1068 ATGGAACTCGACACTAGAAAGCATATGTGAAGGTGTTCCAATGATATGTACACCGTGTTT 1127
Query 1206 CACGGACCAGCATGTGAACGCGAGATACATCGTTGATGTATGGCGAGTCGGGAT-GTTGT 1264
|||||||||| |||||| ||||| ||||| ||||||||||||||| ||||||| | ||
Sbjct 1128 CACGGACCAGTTTGTGAATGCGAGGTACATTGTTGATGTATGGCGAATCGGGATTGA-GT 1186
Query 1265 TAGAGAGAAG-TAAGATGGAAAAGAAGGAGATTGAAAAGGTGCTAAGAAGTGTAATGATG 1323
|||||||| | || |||||| | |||||||||||| |||||| || |||||||||||||
Sbjct 1187 TAGAGAGA-GCTACGATGGATAGGAAGGAGATTGAGAAGGTGTTACGAAGTGTAATGATA 1245
Query 1324 GAG-AAGGGAGATGGA-TTGAGGGAAAGGAGTTTGAAGTTGAAAGAGAGAGCTGATTTTT 1381
|| |||| |||| || || || || | | ||||||| ||||||||||||||| || |||
Sbjct 1246 AAGGAAGG-AGATTGAATT-AGAGAGATGTGTTTGAAATTGAAAGAGAGAGCTAATGTTT 1303
Query 1382 GCTTAAGTAAAGATGGGTCTTCTTCCA-AGTATTTAGACAAACTTGTGAGTCATGTCCTG 1440
||||||||| ||||||||||||||||| | ||| |||||| |||||||| ||||||||||
Sbjct 1304 GCTTAAGTATAGATGGGTCTTCTTCCATA-TATCTAGACACACTTGTGAATCATGTCCTG 1362
Query 1441 TCTTTTGATTCTTATGCTTTTGCAAGTTA 1469
||||||||| |||||| | ||||||||||
Sbjct 1363 TCTTTTGATCCTTATGATGTTGCAAGTTA 1391
> Ahg485040 jgi|Araly1|485040|fgenesh2_kg.5__1032__AT3G46670.1
Length=1588
Score = 76.8 bits (41), Expect = 4e-13
Identities = 60/69 (87%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 1123 GGAGCGTTTTGGA-CACATTGTGGATGGAACTCGACACTAGAGAGCATATGTGAAGGTGT 1181
|||| |||||||| | || ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1202 GGAGGGTTTTGGAGC-CACTGTGGATGGAACTCGACACTAGAGAGCATCGGGGAAGGAGT 1260
Query 1182 TCCTATGAT 1190
||| |||||
Sbjct 1261 TCCAATGAT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58582796810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5