BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55710.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486005 jgi|Araly1|486005|fgenesh2_kg.5__1997__AT3G55710.1 1808 0.0
Ahg486004 jgi|Araly1|486004|fgenesh2_kg.5__1996__AT3G55700.1 1594 0.0
Ahg898513 jgi|Araly1|898513|Al_scaffold_0005_2479 1225 0.0
> Ahg486005 jgi|Araly1|486005|fgenesh2_kg.5__1997__AT3G55710.1
Length=1417
Score = 1808 bits (979), Expect = 0.0
Identities = 1274/1414 (90%), Gaps = 29/1414 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAGAAAAGTGAAGAGAATTATCATGTTCCCTCTACCGTTTACAGGACACTTC 60
|||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1 ATGGAAGAGAGAAAAGGGAGGAGAATAATCATGTTCCCTCTACCATTTACGGGACACTTC 60
Query 61 AACCCTATGATCGAGCTTGCTGGAATATTCCACAACCGTGGCTTCTCCGTCACGATACTC 120
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 61 AACCCGATGATCGAGCTTGCTGGAATATTCCACCACCGTGGCTTCTCCGTCACGATCCTC 120
Query 121 CACACTTCTTTCAACTTCCCGGATCCTTCTCGCCATCCACAGTTTACTTTTCGAACTATC 180
|||||||| | ||||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct 121 CACACTTCCTACAACTTCCCTGATCCTTCTCGCCATCCACACTTCACTTTTCGAACCATC 180
Query 181 ACTCACAAAAACGAAGGAGAAGAAGACCCTCTCTCTCAATCAGAAACTTCTTCGGGTAAG 240
|||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 181 ACTCACGAAAACGAAGGAGAAGAAGACCCTCTGTCTCAATCAGAGACGTCTTCGGGTAAG 240
Query 241 GACCTCGTCGTCCTTATTAGTCTGCTGAAACAATAC--TA-C-A-CCG---AGCC-GTCT 291
||||| |||||||| ||||||||||||||||||| | || | | ||| ||| ||||
Sbjct 241 GACCTTGTCGTCCTCATTAGTCTGCTGAAACAATGCTATACCGAGCCGTTTCGCCAGTCT 300
Query 292 CTTGCAGAGGAAGTAGGCGAAGGAGGGACGGTGTGTTGTTTGGTCTCCGACGCTCTATGG 351
||||||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||
Sbjct 301 CTTGCAGCGGAAGTAGCCGGAGGAGGGACGGTGTGTTGTTTGATCTCTGACGCTCTATGG 360
Query 352 GGGAGGAACACGGAGATTGTAGCGAAAGAGATTGGAGTGT-GTACAATGGTGATGAGGAC 410
||||||||||| ||| |||||||| ||||| ||||||| | ||| ||||||| |||||||
Sbjct 361 GGGAGGAACACCGAGGTTGTAGCGGAAGAGGTTGGAGT-TCGTAGAATGGTGTTGAGGAC 419
Query 411 TA-GTGGTGCGGCAACGTTTTGTGCTTATACAGCTTTCCCTCTCCTTATAGATAAGGGTT 469
| ||||||| | | |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 420 -AGGTGGTGCCGTATCGTTTTGTGCTTATGCAGCTTTCCCTCTCCTTAGAGATAAGGGTT 478
Query 470 ACCTTCCTATACAAGGTTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAAAG 529
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 ACCTCCCTATACAAGATTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTAAAAG 538
Query 530 TGAAGGATCTTCCTGTAATAAAAACGAAAGAGCCTGAGGGACTAAACCGAATACTTAACG 589
||||||||||||| |||||| |||| |||||||| |||| ||| |||| || ||||||
Sbjct 539 TGAAGGATCTTCCGGTAATAGAAACAAAAGAGCCGGAGGAACTTTACCGGGTAGTTAACG 598
Query 590 ACATGGTGGAAGGAGCCAAGT-TATCTTCCGGAGTCGTATGGAACACATTTGAAGATCTT 648
||||||||||||||||||||| | ||||| |||||| ||||||||| ||||||||||||
Sbjct 599 ACATGGTGGAAGGAGCCAAGTCT-TCTTCAGGAGTCATATGGAACAGTTTTGAAGATCTT 657
Query 649 GAAAGACAT-TCACTCATGGATTGTCGCAGCAAGTTACAAGTTCCGTTGTTCCCAATCGG 707
||||||| | ||||||||||||| ||||||||||||||||||||| || ||||| |||||
Sbjct 658 GAAAGAC-TCTCACTCATGGATTCTCGCAGCAAGTTACAAGTTCCTTTCTTCCCTATCGG 716
Query 708 ACCGTTTCACAAACATAG-AACCGATCTTCCACCGAAGCCAAAGAACAAGGACAAGGACG 766
|||||||||||||||| | || |||||||||||||||| ||||| | |||||||||
Sbjct 717 ACCGTTTCACAAACATTGCAA-CGATCTTCCACCGAAGACAAAG----A--ACAAGGACG 769
Query 767 ATGATGAAATATTAACCGATTGGCTTAACAAGCAAGCTCCGCAGTCTGTGGTCTATGTGA 826
|||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||
Sbjct 770 ATGATGAAATATTAACCGATTGGCTTGACAAGGAAGATCCACAGTCTGTGGTCTATGTGA 829
Query 827 GTTTTGGAAGCCTTGCAGCTATAGAAGAGAATGAGTTTTTCGAAATTGCTTGGGGTCTAA 886
|||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||
Sbjct 830 GTTTTGGAAGCCTTGCAGCTATAGAAGAAAAGGAGTTTCTCGAGATTGCTTGGGGTCTAA 889
Query 887 GAAACAGCGAACTACCATTCTTGTGGGTGGTTAGGCCCGGGATGGTCCG-GGGAACCGAG 945
||||||||||| |||||||||||||||||||||||| |||||||| || |||| ||| |
Sbjct 890 AAAACAGCGAACGACCATTCTTGTGGGTGGTTAGGCCGGGGATGGTGCGAGGGA-CCGGG 948
Query 946 TGGCTTGAGTCATTGCCTTGTGGGTTTTTGGAAAATATTGGTCATCAGGGAAAAATTGTG 1005
||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 949 TGGCTTGAGTCATTGCCTTGTGGGTTTTTGGAAAACATTGGTCATAAGGGAAAATTTGTG 1008
Query 1006 AAATGGGTGAATCAACTAGAGACATTGGCCCATCCTGCGGTTGGAGCGTTTTGGACGCAC 1065
||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 1009 AAATGGGTGAATCAACTAGAGGTATTGGCTCATCCTGCCGTTGGAGCGTTTTGGACGCAC 1068
Query 1066 TGTGGATGGAACTCAACAATAGAGAGCATATGTGAAGGTGTTCCAATGATATGTACGCCG 1125
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1069 TGCGGATGGAACTCAACAATAGAGAGCATATGTGAAGGCGTTCCAATGATTTGTACGCCG 1128
Query 1126 TGTTTCTCGGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATGGCGAGTCGGGATG 1185
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||
Sbjct 1129 TGTTTCTCGGACCAGCATGTAAACGCTAGGTACATTGTTGATGTATGGCGAGTTGGGATG 1188
Query 1186 ATGTTAGAGAGATGTAAGATGGAAAGGACGGAGATTGAGAAGGTAG-TAACAAGTGTAAT 1244
||||||||||| | ||||| ||||||| |||||||||||| | | ||| || ||||||
Sbjct 1189 GTGTTAGAGAGAAGCAAGATAGAAAGGAAGGAGATTGAGAATGC-GCTAAGAATTGTAAT 1247
Query 1245 GATGGAGAATGGAGCTGGATTGACAGAGATGTGTTTGGAGTTGAAAGAGAAAGCTAATGT 1304
||||||||| |||| |||||||| ||||| | ||||| |||||||||||| |||| || |
Sbjct 1248 GATGGAGAAAGGAGATGGATTGAGAGAGAGGAGTTTGAAGTTGAAAGAGAGAGCTGATTT 1307
Query 1305 TTGCTTAAGTGAAGATGGGTCTTCTTCCAAGTATCTAGACAAACTTGTCAGTCATGTCCT 1364
|||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1308 TTGCTTAAGTAAAGATGGTTCTTCTTCCAAGTATCTAGATGAACTTGTCAGTCATGTCCT 1367
Query 1365 GTCTTTTGATTCCTCGGCTTTTGCAAGTTAAAAT 1398
|||||||||||||| |||||||||||||||||||
Sbjct 1368 GTCTTTTGATTCCTAGGCTTTTGCAAGTTAAAAT 1401
> Ahg486004 jgi|Araly1|486004|fgenesh2_kg.5__1996__AT3G55700.1
Length=1526
Score = 1594 bits (863), Expect = 0.0
Identities = 1266/1457 (87%), Gaps = 42/1457 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAGAAAAGTGAAGAGAATTATCATGTTCCCTCTACCGTTTACAGGACACTTC 60
||||||||||||| || || |||||| ||||||||||||||||| ||| | |||||||||
Sbjct 62 ATGGAAGAGAGAAGAGGGAGGAGAATAATCATGTTCCCTCTACCATTTGCGGGACACTTC 121
Query 61 AACCCTATGATCGAGCTTGCTGGAATATTCCACAACCGTGGCTTCTCCGTCACGATACTC 120
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 122 AACCCGATGATCGAGCTTGCTGGAATATTCCACCACCGTGGCTTCTCCGTCACGATCCTC 181
Query 121 CACACTTCTTTCAAC-TTCCCGGATCCTTCTCGCCATCCACAGTTTACTTTTCGAACTAT 179
|||||||| | |||| ||||| |||||||||||||| || || || ||||||||| | ||
Sbjct 182 CACACTTCCTACAACTTTCCC-GATCCTTCTCGCCACCCTCACTTCACTTTTCGATCCAT 240
Query 180 CACTCACAA-AAACGAAGGAGAAGAAGACCCTCTCTCTCAATCAGAAACTTCTTCGGGTA 238
| ||||||| ||| |||||||||||||||||||| ||||| ||||||| ||||| |||
Sbjct 241 CCCTCACAACAAA-GAAGGAGAAGAAGACCCTCTATCTCAGTCAGAAA---CTTCGAGTA 296
Query 239 AGGACCTCGTCGTCCTTATTAGTCTGCTGAAACAATACTACACCGAG-C----CGTC--T 291
||||||| |||| || || ||| ||||||||||| |||| ||||| | |||| |
Sbjct 297 TGGACCTCATCGTTCTCATGCGTCGGCTGAAACAATGCTACGCCGAGACGTTTCGTCAGT 356
Query 292 C-TT-GCAGAGGAAGTAGGCGAAGGAGGGACGGTGTGTTGTTTGGTCTCCGACGCTCTAT 349
| || |||||||||||||| | ||||| |||| ||||||||||||||||||||||| |||
Sbjct 357 CTTTGGCAGAGGAAGTAGGTGGAGGAGAGACGATGTGTTGTTTGGTCTCCGACGCTATAT 416
Query 350 GGGGGAGGAACACGGAGATTGTAGCGAAAGAGATTGGAGTGT-GTACAATGGTGATGAGG 408
|||| | || | ||||| |||||||| ||||||||||||| | ||| ||||| |||||
Sbjct 417 GGGGAAAGATCTCGGAGGTTGTAGCGGAAGAGATTGGAGT-TCGTAGGGTGGTGTTGAGG 475
Query 409 ACTA-GTGGTGCGGCAACGTTTTGTGCTTATACAGCTTTCCCTCTCCTTATAGATAAGGG 467
|| | |||||||| | |||||||||||| | | |||| |||||| |||| ||||||||
Sbjct 476 AC-AGGTGGTGCGTCGTCGTTTTGTGCTTTTGCCGCTTACCCTCTGCTTAGGGATAAGGG 534
Query 468 TTACCTTCCTATACAAGGTTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAA 527
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATACCTCCCTATACAAGATTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAA 594
Query 528 AGTGAAGGATCTTCCTGTAATAAAAACGAAAGAGCCTGAGGGACTAAACCGAATACTTAA 587
||| || |||||||| ||||| ||||||||||||| |||| ||| |||| || ||||
Sbjct 595 AGTTAAAGATCTTCCGGTAATGGAAACGAAAGAGCCGGAGGAACTTTACCGGGTAGTTAA 654
Query 588 CGACATGGTGGAAGGAGCCAAGT-TATCTTCCGGAGTCGTATGGAACACATTTGAAGATC 646
||| ||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||
Sbjct 655 CGATATGGTGGAAGGAGCCAAGTCT-TCTTCAGGAGTCATATGGAACACATTTGAAGATC 713
Query 647 TTGAAAGACAT-TCACTCATGGATTGTCGCAGCAAGTTACAAGTTCCGTTGTTCCCAATC 705
||||||||| | ||||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 714 TTGAAAGAC-TCTCACTCATGGATTGTAGCAACAAGTTACAAGTTCCGTTTTTCCCAATC 772
Query 706 GGACCGTTTCACAAACATAG-AACCGATCTTCCACCGAAGCCAAAGAACAAGGACAAGGA 764
|||||||||||||||||||| | ||||| ||||| |||| |||||||||||||| ||
Sbjct 773 GGACCGTTTCACAAACATAGCGA-CGATCATCCACTGAAGACAAAGAACAAGGAC---GA 828
Query 765 CGATGATGAAATATTAACC-GATTGGCTTAACAAGCAAGCTCCGCAGTCTGTGGTCTATG 823
| ||| ||| | |||| | ||||||| ||||||||| ||| |||||||| ||||| |
Sbjct 829 C---GAT-AAA-A-CAACCTG-TTGGCTTGACAAGCAAGATCCACAGTCTGTAGTCTACG 881
Query 824 TGAGTTTTGGAAGCCTTGCAGCTATAGAAGAGAATGAGTTTTTCGAAATTGCTTGGGGTC 883
|||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 882 TGAGTTTTGGAAGCCTTGCAGCTATAGAAGAGAAGGAGTTTCTCGAGATTGCTTGGGGTC 941
Query 884 TAAGAAACAGCGAACTACCATTCTTGTGGGTGGTTAGGCCCGGGATGGTCCG-GGGAACC 942
|||||||||| || ||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 942 TAAGAAACAGTAAATTACCATTCTTGTGGGTGGTTAGGCCAGGGATGGTCCGAGGG-ACC 1000
Query 943 GAGTGGCTTGAGTCATTGCCTTGTGGGTTTTTGGAAAATATTGGTCATCAGGGAAAAATT 1002
|||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 1001 GAGTGGCTTGAGTCATTGCCTTGTGGGTTTTTGGAAGACATTGGTCATAAGGGAAAAATT 1060
Query 1003 GTGAAATGGGTGAATCAACTAGAGACATTGGCCCATCCTGCGGTTGGAGCGTTTTGGACG 1062
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 1061 GTGAAATGGGTGAATCAACTAGAGGTTTTGGCGCATCCTGCCGTTGGAGCGTTTTGGACG 1120
Query 1063 CACTGTGGATGGAACTCAACAATAGAGAGCATATGTGAAGGTGTTCCAATGATATGTACG 1122
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CACTGCGGATGGAACTCAACACTAGAGAGCATATGTGAAGGTGTTCCAATGATATGTACG 1180
Query 1123 CCGTGTTTCTCGGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATGGCGAGTCGGG 1182
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 CCGTGTTTCTCAGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATGGCGAGTCGGT 1240
Query 1183 ATGATGTTAGAGAGATGTAAGATGGAAAGGACGGAGATTGAGAAGGTAGTAACAAGTGTA 1242
||| ||||||||||| |||||||||||| || |||||||||||| | | ||| |||||||
Sbjct 1241 ATGGTGTTAGAGAGAAGTAAGATGGAAATGAAGGAGATTGAGAATGCACTAAGAAGTGTA 1300
Query 1243 ATGATGGAGAATGGAGCTGGATTGACAGAGATGTGTTTGGAGTTGAAAGAGAAAGCTAAT 1302
||||||||||| |||| || ||||| ||||| | || || |||| ||||||| ||| ||
Sbjct 1301 ATGATGGAGAAGGGAGATGAATTGAGAGAGAGGAGTCTGAAGTTAAAAGAGAGTGCTGAT 1360
Query 1303 GTTTGCTTAAGTGAAGATGGGTCTTCTTCCAAGTATCTAGACAAACTTGTCAGTCATGTC 1362
||||||||| | ||||||| ||||| |||||| || |||| |||||||| |||||||||
Sbjct 1361 TTTTGCTTAACTAAAGATGGATCTTCGTCCAAGAATTTAGAAAAACTTGTGAGTCATGTC 1420
Query 1363 CTGTCTTTTGATTCCTCGGCTTTTGCAAGTTAAAATAAATTAC-AAGGAGCAAAATGT-C 1420
||||||||| |||| | |||||||||||||| || |||| | || ||| || | | |
Sbjct 1421 CTGTCTTTTAATTCTTATGCTTTTGCAAGTTAGAA-AAATCATGAATGAGTAATGTATTC 1479
Query 1421 TAGGCACTTTTCAAAAT 1437
|| ||||| ||||||||
Sbjct 1480 TAAGCACTCTTCAAAAT 1496
> Ahg898513 jgi|Araly1|898513|Al_scaffold_0005_2479
Length=1392
Score = 1225 bits (663), Expect = 0.0
Identities = 1178/1421 (83%), Gaps = 57/1421 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAGAAAAGTGAAGAGAATTATCATGTTCCCTCTACCGTTTACAGGACACTTC 60
||||| ||||||||||||| || ||| |||||||||||| |||||||| | |||||||||
Sbjct 1 ATGGATGAGAGAAAAGTGAGGAAAATAATCATGTTCCCTTTACCGTTTCCGGGACACTTC 60
Query 61 AACCCTATGATCGAGCTTGCTGGAATATTCCACAACCGTGGCTTCTCCGTCACGATACTC 120
||||| |||||| | || || ||||||||||| |||||||||||||||||||||| |||
Sbjct 61 AACCCAATGATCCAACTCGCCAGAATATTCCACCACCGTGGCTTCTCCGTCACGATCCTC 120
Query 121 CACACTTCTTTCAACTTCCCGGATCCTTCTCGCCATCCACAGTTTACTTTTCGAACTATC 180
|||||||| ||||||| ||| ||||||||| | | |||| || ||||||||||| |||
Sbjct 121 CACACTTCATTCAACTCCCCAAATCCTTCTCACTACCCACTCTTCACTTTTCGAACCATC 180
Query 181 ACTCACAAAAACGAAGGAGAAGAAGACCCTCTCTCTCAATCAGAAACTTCTTCGGGTAAG 240
||||||| |||||||||| |||||| ||||| ||||| ||||| |||| | ||| |
Sbjct 181 CCTCACAACAACGAAGGAGGAGAAGATCCTCTGACTCAACCAGAAGCTTC-T--AGTATG 237
Query 241 GACCTCGTCGTCC-TTATTAGTCTGCTGAAACAATA-CTACACCGAG-C----CGTC--T 291
|| || |||| || ||||| | ||||||| |||| | ||| | ||| | |||| |
Sbjct 238 GATCTTGTCG-CCTTTATTCGACTGCTGAGACAA-ACCTATGCGGAGACGTTTCGTCAGT 295
Query 292 CT-T-GCAGAGGAAGTAGGCGAAGGAGGGACGGTGTGTTGTTTGGTCTCCGACGCTCTAT 349
|| | || | ||||||||| | ||||| |||| |||||||||| |||||||| ||| | |
Sbjct 296 CTCTGGCGGCGGAAGTAGGTGGAGGAGAGACGATGTGTTGTTTTGTCTCCGATGCTGTTT 355
Query 350 GGGGGAGGAACACGGAGATTGTAG-CGAAAGAGATTGGAGTGTGTACAATGGTGATGAGG 408
||| ||||||||||||| | | || ||||| || | ||||| ||| | | ||| |||
Sbjct 356 GGGCGAGGAACACGGAGGTCGCAGCCGAAA-AGGTCGGAGTACGTAGAGTAGTGTTGATT 414
Query 409 ACTAGTGGTGCGGCAACGTTTTGTGCTTATACAGCTTTCCCTCTCCTTATAGATAAGGGT 468
|| ||||||| ||| |||||||||||| | | |||||||||||||||| ||||||| |
Sbjct 415 ACAAGTGGTGTGGCGTCGTTTTGTGCTTTTGCTGCTTTCCCTCTCCTTAGAGATAAGCAT 474
Query 469 TACCTTCCTATACAAGGTTCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAAA 528
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TACCTCCCTATACAAGAATCTAGATTAGATGAGCTAGTGACAGAGCTTCCACCTTTGAAA 534
Query 529 GTGAAGGATCTTCCTGTAATAAAAACGAAAGAGCCTGAGGGACTAAACCGAATACTTAAC 588
|| ||||||||||| ||||| ||||||| ||||| |||| |||| |||| || |||||
Sbjct 535 GTTAAGGATCTTCCGGTAATGGAAACGAATGAGCCGGAGGAACTATACCGGGTAGTTAAC 594
Query 589 GACATGGTGGAAGGAGCCAAGT-TATCTTCCGGAGTCGTATGGAACACATTTGAAGATCT 647
|| ||||| |||||||| ||| | ||||| ||| || ||||||||||||| ||||||||
Sbjct 595 GATATGGTTAAAGGAGCCGAGTCT-TCTTCAGGACTCATATGGAACACATTCGAAGATCT 653
Query 648 TGAAAGACAT-TCACTCATGGATTGTCGCAGCAAGTTACAAGTTCCGTTGTTCCCAATCG 706
|||||||| | ||||||||||||| | | |||||||| |||||||| | ||||| || |
Sbjct 654 TGAAAGAC-TCTCACTCATGGATTTTAGGAGCAAGTTTCAAGTTCCCATATTCCCGATTG 712
Query 707 GACCGTTTCACAAACATA--GAACCGATCTTCCACCGAAGCCAAAGAACAAGGACAAGGA 764
|||||||||||||||||| ||| |||||| ||||| | ||||||||| | || ||
Sbjct 713 GACCGTTTCACAAACATAGCGAA--AATCTTCTACCGATGATAAAGAACAA--AGAA-GA 767
Query 765 CGATGATGAAATATTAACCGATTGGCTTAACAAGCAAGCTCCGC-AGTCTGTGGTCTATG 823
| ||| | | | |||||||||||| || ||||||| ||| | ||||||| |||||||
Sbjct 768 CCATG-T---A-A-CAACCGATTGGCTCAATAAGCAAGATCC-CAAGTCTGTAGTCTATG 820
Query 824 TGAGTTTTGGAAGCCTTGCAGCTATAGAAGAGAATGAGTTTTTCGAAATTGCTTGGGGTC 883
| |||||||| ||||||||| |||||| ||||| |||||| |||| |||||||||||||
Sbjct 821 TAAGTTTTGGGAGCCTTGCAAATATAGAGGAGAAGGAGTTTCTCGAGATTGCTTGGGGTC 880
Query 884 TAAGAAACAGCGAACTACCATTCTTGTGGGTGGTTAGGCCCGGGATGGTCCG-GGGAACC 942
|||||||||| |||| ||| || ||||||||||||||||| ||| | ||||| || ||
Sbjct 881 TAAGAAACAGTGAACGACCCTTTTTGTGGGTGGTTAGGCCAGGGTTAGTCCGAAGG-ACT 939
Query 943 GAGTGGCTTG-AGTCATTGCCTTGTGGGTTTTTGGAAAATATTGGTCATCAGGGAAAAAT 1001
|||||||| | || |||||||| |||| ||| ||||||| ||||| || |||||||| |
Sbjct 940 GAGTGGCTGGAAG-CATTGCCTAGTGGATTTGTGGAAAACATTGGCCAGAAGGGAAAATT 998
Query 1002 TGTGAAATGGGTGAATCAACTAGAGACATTGGCCCATCCTGCGGTTGGAGCGTTTTGGAC 1061
||| ||||||||||||||| ||||| |||||| ||| |||| ||||| || ||||||||
Sbjct 999 TGTAAAATGGGTGAATCAATTAGAGGTATTGGCGCATTCTGCTGTTGGGGCATTTTGGAC 1058
Query 1062 GCACTGTGGATGGAACTCAACAATAGAGAGCATATGTGAAGGTGTTCCAATGATATGTAC 1121
||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1059 GCATTGTGGATGGAACTCGACACTAGAAAGCATATGTGAAGGTGTTCCAATGATATGTAC 1118
Query 1122 GCCGTGTTTCTCGGACCAGCATGTGAACGCGAGGTACATCGTTGATGTATGGCGAGTCGG 1181
||||||||| |||||||| |||||| ||||||||||| ||||||||||||||| ||||
Sbjct 1119 ACCGTGTTTCACGGACCAGTTTGTGAATGCGAGGTACATTGTTGATGTATGGCGAATCGG 1178
Query 1182 GAT-GATGTTAGAGAGATG-TAAGATGGAAAGGACGGAGATTGAGAAGGTAGTAAC-AAG 1238
||| || |||||||||| | || |||||| |||| ||||||||||||||| || || |||
Sbjct 1179 GATTGA-GTTAGAGAGA-GCTACGATGGATAGGAAGGAGATTGAGAAGGT-GTTACGAAG 1235
Query 1239 TGTAATGATGGAG-AATGGAGCTGGA-TTGACAGAGATGTGTTTGGAGTTGAAAGAGAAA 1296
||||||||| || || |||| | || || | ||||||||||||| | |||||||||| |
Sbjct 1236 TGTAATGATAAAGGAA-GGAGATTGAATT-AGAGAGATGTGTTTGAAATTGAAAGAGAGA 1293
Query 1297 GCTAATGTTTGCTTAAGTGA-AGATGGGTCTTCTTCCA-AGTATCTAGACAAACTTGTCA 1354
|||||||||||||||||| | ||||||||||||||||| | |||||||||| |||||| |
Sbjct 1294 GCTAATGTTTGCTTAAGT-ATAGATGGGTCTTCTTCCATA-TATCTAGACACACTTGTGA 1351
Query 1355 GTCATGTCCTGTCTTTTGATTCCTCG-GCTTTTGCAAGTTA 1394
||||||||||||||||||| ||| | | ||||||||||
Sbjct 1352 ATCATGTCCTGTCTTTTGAT-CCTTATGATGTTGCAAGTTA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5