BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55720.1
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486006 jgi|Araly1|486006|fgenesh2_kg.5__1998__AT3G55720.1 2311 0.0
> Ahg486006 jgi|Araly1|486006|fgenesh2_kg.5__1998__AT3G55720.1
Length=1488
Score = 2311 bits (1251), Expect = 0.0
Identities = 1412/1491 (95%), Gaps = 6/1491 (0%)
Strand=Plus/Plus
Query 1 GAAAAAGTTTCGATTAC-CTATC-TTTTTCCGGCAATAACATTTCTCTTCTAAGATTTTG 58
||||||||||||||||| | ||| ||||| |||||| || |||||||||||||||||||
Sbjct 1 GAAAAAGTTTCGATTACAC-ATCTTTTTTTTGGCAATCACTTTTCTCTTCTAAGATTTTG 59
Query 59 CTAAAAGAGTTAAAAATGAGAACACTTTGTCCTAATTTCGATAGAGAAGACGGTTTAGAG 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 CTAAAAGAGTTAAAAATGAGAACACTTTGTCCTAATTTCGATAGAGAAGACGGTCTAGAG 119
Query 119 ACGGTATTGGAAGTTCCGATGCCGGAGGAGTTGTTCTGTTCGGACAACAACAAGAGCGGC 178
|| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 120 ACCGTGTTGGAAGTTCCGATGCCGGAGGAGTTGTTTTGTTCCGACAACAACAAGAGCGGC 179
Query 179 GCTTGGCGTAGCGTCAAATCTAGTTTGCTCCGGTCACCGCCGGATAACAGTAGCAGCCTT 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 ACTTGGCGTAGCGTCAAATCTAGTTTGCTCCGGTCACCGCCGGATAACAGTAGTAGCCTC 239
Query 239 GCCACACTATTCGGCGGTCGTGACTCTCAGATTCAGATGCTTCTTGGAATCGTTGGAGCT 298
|||||||| || || || |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 240 GCCACACTTTTTGGTGGACGTGACGCTCAGATTCATATGCTTCTTGGAATCGTTGGAGCT 299
Query 299 CCGTCGATACCTCTCCCTATTTCTTCCGATCAGGCCAAGATTGATCATCCCATCTCCAAT 358
|||||||| ||||| ||| || |||||||||| | | |||||||||||||||||||||||
Sbjct 300 CCGTCGATCCCTCTTCCTGTTGCTTCCGATCACGACGAGATTGATCATCCCATCTCCAAT 359
Query 359 CTCATTAAAAACCAATCTATTGAATCAGCCATGGCGAAGTACATAGTAAAGCAATACACT 418
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCATCAAAAACCAATCTATTGAATCAGCCATGGCGAAGTACATAGTAAAGCAATACACC 419
Query 419 GCAGCCGCTGGAGGAGAGATGGCTTTGGATGCCGTGGAGAGCATGTACGCGATGGGAAAG 478
||||| || ||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 420 GCAGCAGCAGGAGGAGAGATGGCTTTGGCTGGGGTGGAGAGCATGTACGCGATCGGAAAG 479
Query 479 GTGAAGATGGGAGTGACTGAGTTTTGTGCAGCGAAAACCCTAAATGGGAAGAGGAAGAAG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTGAAGATGGGAGTGACTGAGTTTTGTGCAGCGAAAACCCTAAATGGGAAGAGGAAGAAT 539
Query 539 AAGATGGTGAGGATAAGAAACGTCAATAACAACAACGGAAACGGAGGAGAGATGGGAGGT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGATGGTGAGGATAAGAAACGTCAATAACAACAACGGAAACGGAGGAGAGATGGGAGGC 599
Query 599 TTTGTGTTATGGAAGAAAGGTTCGAGTCAATGGAGTTTAGAGCTTGTGGTTTCGGGTTGT 658
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTGTGTTATGGAAGAAAGGTTTGAGTCAATGGAGTTTAGAGCTTGTGGTTTCGGGTTGT 659
Query 659 AAAGTTAGTGCTGGTTGTGATGGTAACGTGGATTGGAGACAAAGCCCTTGGCTCGCACAT 718
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 660 AAAGTTAGTGCTGGTTGTGATGGTAACGTGGCTTGGAGACAAAGCCCTTGGCTCGCACAT 719
Query 719 TCTCATGCTTCTAATGAACCTTCTGGACCTCTTAGAAGGTTCCTTCAAGGGCTTGATCCT 778
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 720 TCTCATGCTTCTAATGAACCTTCTGGACCTCTCAGAAGGTTTCTCCAAGGGCTTGATCCT 779
Query 779 AAAACCACAGCAAATTTATTTGCGGGATCCGTTTGCGTGGGTGAAAAGGCGGTTAACAAC 838
|||||||| |||||||| || || ||||| ||||||||||||||||||||||| ||| ||
Sbjct 780 AAAACCACCGCAAATTTGTTCGCTGGATCGGTTTGCGTGGGTGAAAAGGCGGTAAACGAC 839
Query 839 GAAGAATGCTTTGTGCTTAAGCTCGAAACGCAGCCTTCGGGACTTAAATCTAGAAGCAAG 898
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 GAAGAATGCTTTGTGCTTAAGCTCGAAACGCAGCCATCGGGACTTAAATCTAGAAGCAAG 899
Query 899 AGCGGTATGGAGACAGTGAAGCATACCGTGTGGGGATGTTTTGGTCAAAGAACAGGACTT 958
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 AGCGGTATGGAAACGGTGAAGCATACCGTGTGGGGATGTTTTAGTCAAAGAACAGGACTT 959
Query 959 TTGGTTCAATTAGAGGATACTTATCTAGTACGGATCAAGACCGGTCTGGAAGATGAAGAT 1018
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 960 TTGGTTCAATTAGAGGATACTTATCTAGTACGGATCAAGACCTGTCTGGAAGAAGAAGAT 1019
Query 1019 ATGGTCTTGTGGGAAACGACGTCTGAGACATTGATCCAAGATTATAAGAGCATTGATGGG 1078
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1020 ATGGTCTTGTGGGAAACGTCGTCTGAGACACTGATCCAAGATTATAAGAGCGTTGATGGG 1079
Query 1079 ATTCAGATCGCTCACAGAGGAAAAACACGTGTCTCATTGTTGAGGCTTGATGAGAGCTTA 1138
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATACAGATTGCTCACAGAGGAAAAACACGTGTCTCATTGTTGAGGCTTGATGAGAGCTTA 1139
Query 1139 GAGAGCCATTCAAAGACTACAATGGAAGAGAGTTGGGAGATTGAAGAAGTGGGTTTTAAT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGAGCCATTCAAAGACTACAATGGAAGAGAGTTGGGAGATTGAAGAAGTGGGTTTTAAT 1199
Query 1199 GTGAAGGGTTTGTCTTCAGATTTCTTCTTGCCTCCTGGTGACTTGTGTATTAAGGAAGAA 1258
||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||
Sbjct 1200 GTGAAGGGTTTGTCTTCGGATTTCTTCTTGCCTCCAGGTGACTTGCATACCAAGGAAGAA 1259
Query 1259 GAAGAAACCGGGTTTAGTTTCGGAGATTATACTAGTCCTATGCTGCTTCCATTGAAGGTT 1318
||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1260 GAAGAAAGTGGATTTAGTTTCGGAGATTATAGTAGTCCTATGCTGCTTCCATTGAAGGTT 1319
Query 1319 AGTACCA-CTTCATGGAAAATCAAGTCCTCAAAAGTCACAGCTATTGAAGATTTTGGTGA 1377
||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 AGTAC-AGCTTCATGGAAACTCAAGTCCTCTAAAGTCACAGCTATTGAAGATTTTGGTGA 1378
Query 1378 ATTTGAGGGATAAAAAAGTGAAGACGTTTCAAGATATTTTTATTGTAAATTGATCTTCAT 1437
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATTTGAGGGATGAGAAA-TGAAGACGTTTCAAGATATTTTTATTGTAAATTGATCTTCAT 1437
Query 1438 TTTGTATATATATGGAAAATTATGGAGAAAAGTGCTTGTAAATAACATTAT 1488
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TTTATATATATATGGAAAATTATGGAGAAAAGTGCTTGTAAATAACATTAT 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56106930885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5