BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55730.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486007 jgi|Araly1|486007|fgenesh2_kg.5__1999__AT3G55730.1 2060 0.0
> Ahg486007 jgi|Araly1|486007|fgenesh2_kg.5__1999__AT3G55730.1
Length=1428
Score = 2060 bits (1115), Expect = 0.0
Identities = 1370/1483 (92%), Gaps = 57/1483 (4%)
Strand=Plus/Plus
Query 1 TAGGAAAGCTGGTACAAACCAAATTTCAttttttttCTTTTAATTAATTTTGGCCaaaaa 60
|||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||
Sbjct 1 TAGGAAAGCTGGTACAAACCAAATTTCA-----TTT-TTTTAATTAATTTT-GCC-CAAA 52
Query 61 gaaaaaaaaaTCGAAACtttttttGTGTAAATGGAAGGAGAAACTCATCAATCGGAGCCG 120
|||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 53 -AAAAAAAAATCG-AAC-TTTTTTGTGTTAATGGAAGGAGAAACTCATCGATCGGAGCCG 109
Query 121 TTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTT 180
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 110 TTACCTTTAGCATCTGCAGATTCCGATGAAGGAATCAGTGCTTCGATTGAGGCGGAGCTT 169
Query 181 GCTGAGTTAGCTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGG 240
|||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 170 GCTGAGTTAGCTGCTGGAGATTCAAGCGGCGGTGGTGG-T-----GGC------GGAGGG 217
Query 241 ATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCTT-ACGAAGCT 299
|||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 218 ATTAAGAGTAAAGTTAAAGGACCTTGGTCTACGGAGGAAGACGCGGTT-TTAACGAAGCT 276
Query 300 TGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTC 359
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TGTGAGGAAATTAGGAGCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTC 336
Query 360 TGGTAAATCTTGTCGATTGCGTTGGTGTAATCAGCTTGACCCTTGTCTCAAGCGTAAACC 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TGGCAAATCTTGTCGATTGCGTTGGTGTAATCAGCTTGACCCTTGTCTCAAGCGTAAACC 396
Query 420 TTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATG 456
Query 480 GGCAGTGATTGCGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAA 539
|||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 457 GGCAGTGATTGCGAAAATGTTAACTGGAAGAACTGATAACGCTATTAAGAACCATTGGAA 516
Query 540 CTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGATGGCTAATTC 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CTCAACGCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGATGGCTAATTC 576
Query 600 AGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTC 659
|||||||||||||| |||||| |||||||||||||||||| || |||| |||||| ||
Sbjct 577 AGTTACTACCGCTTACGTCAAGAACGAAAATGTCGATGAAGCATCTAA---TCCATCATC 633
Query 660 AAAACAACAGTTGCCTCAAGGAGATATCAATTCCTCCCCGCCAAAGCCTCCACAAGTGAG 719
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 634 AAAACAACAGTTGCCTCAAGGAGATATCAA-T--TCACCGCCAAAGCCTCCACAAGTGAG 690
Query 720 TGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCAAGAACAACAAGAACA 779
|||||||||||||||||||||||| | || | |||||| ||||||||
Sbjct 691 TGATGTTGTAATGGAAGAGGCAGC---T-AA--T---GAACCT---------CAAGAACA 732
Query 780 AGCTCCACCGGTAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCG 839
||||||||| |||| |||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 733 AGCTCCACCAGTAGAGAGTAACGTTCCAATAGACAATAACGTGTTTCGCCCAGTGGCTCG 792
Query 840 CGTTGGTGCATTCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAGAGACTACAA 899
| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 793 CCTTGGCGCATTCAGTGTCTATAACCCAACCAGCCAGAAAAATGGATACAGAGACCACAA 852
Query 900 TATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAA 959
|||||||||||| ||||||||||| ||||||||||||||||| |||||| |||| |||||
Sbjct 853 TATAGTTCCATGCGAGGGACCGTTAATTCAAGCAGCTAAACCAGATTCACTGGCCGGTAA 912
Query 960 ATTTCTACAATCTCTTTGTGATGAACCTCAAATCCCGTCAAAATGTGGTCACGGCTGCTC 1019
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 913 ATTTCTACAATCTCTTTGCGATGAACCTCAGATCCCGTCAAAATGTGGTCACGGCTGCTC 972
Query 1020 TACTCTTCCAGCTGAAACTAAGTTCTCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGA 1079
||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 973 TACTCATCCAGCTGAAACTAAGTTCCCAAGTAACTCGGTGTTGGGACCAGAGTTTGTGGA 1032
Query 1080 TTATGAAGAGCCTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAA 1139
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1033 TTATGAAGAGCCTTCTGCAGTTTTCAACCAGGAACTGATATCTATAGCAACCGATTTGAA 1092
Query 1140 CAACATTGCATGGATAAAGAGTGGCCTTGACAATGCTGTTGTCAGAGAAGCAGAACAGAG 1199
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1093 CAACATTGCATGGATAAAGAGTGGCCTTGACAATGCCGTTATCAGAGAAGCAGAACAGAG 1152
Query 1200 TTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCC 1259
||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1153 TTTGAAGATCGATAATTTCAATTATAATGATCCTCGAATCAAGTTTACCGGAATGATGCC 1212
Query 1260 TAGACAAGATTTCTTCTGTGCAAGAAGCTGAAACTCAAAAGTAGGGCTTGAGATTCATCA 1319
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1213 TAGACAAGATTTCTTCTGTGCAAGAAGCTGAAACTCAAAAGTAGGT-TTGAGATTCATCT 1271
Query 1320 ACCCCttttttttCTTTTGATTCTTTGCGCTTTGACGCATATAGATGATGAA-TAAGTAC 1378
|||| |||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1272 TCCCCCTTTTTT-CTT--GATTCTTTGCGCTTTGACGCATATAGATGATGATCTAAGTAC 1328
Query 1379 CAGACTGGTACTTATGGATGTTGTTGTTTCTGACATTTTGATTCGGATTTGGTGGAAGAA 1438
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1329 CAGACTGGTACTTATGGATGTTGTT-T--CTGACATTTTGATTCGGATTTGGTGGAAGAA 1385
Query 1439 AGATAGAAAACAGAGTATGTATCGTGTCTCTTATTATATAAAA 1481
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1386 AGATAGAAAACAGAGTCTGTATCGTGTCTCTTATTATATAAAA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5