BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55740.1
Length=1715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486008 jgi|Araly1|486008|fgenesh2_kg.5__2000__AT3G55740.1 2490 0.0
Ahg483024 jgi|Araly1|483024|fgenesh2_kg.4__2084__AT2G39890.2 1153 0.0
> Ahg486008 jgi|Araly1|486008|fgenesh2_kg.5__2000__AT3G55740.1
Length=1622
Score = 2490 bits (1348), Expect = 0.0
Identities = 1558/1653 (94%), Gaps = 40/1653 (2%)
Strand=Plus/Plus
Query 1 TGCAAATAATTCAT----ACATAC--AGACGTATCGATCTTGCTGACCCATCAATTAAAT 54
|||||||||||||| ||| || ||||||||| ||||| |||||||||||||||||
Sbjct 1 TGCAAATAATTCATACACACACACAGAGACGTATCCATCTTTCTGACCCATCAATTAAA- 59
Query 55 TTTGACCCAAAAGGTCAAATTCACTATAAGAAAAACAGAATTCA-TTTCATCAAAATTCC 113
|||||||||||| | | | | |||||||||||| ||||||| ||||||
Sbjct 60 TTTGACCCAAAA-G----A-T--C--------AAACAGAATTCATTTTCATC--AATTCC 101
Query 114 ATTTCACACTTTTTCTGTCTGTTACGATTCTTGCTTGATTTCTTTCTAAACAAAGCAAAA 173
||||||||||||| ||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 102 ATTTCACACTTTTCCTGTCTGTTACGA---TT-CTTGA-TTCTTTCT-AACAAAGCAAAA 155
Query 174 GTTGTCTTTTTGGAGTTGTGAGCAACTAATTCTCTGAAATTGAGGAAGAGAAAGCGAGAA 233
|||||||||||| || |||||||||||||||||| |||| ||||||||||||| | | ||
Sbjct 156 GTTGTCTTTTTGAAG-TGTGAGCAACTAATTCTC-GAAACTGAGGAAGAGAAA-CTA-AA 211
Query 234 GGtttttttGGAGTCAGAGACAGAAGAAGAATTTAACAGATTCTTGTCGGAAACATGGAT 293
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 GG-GTTTTTGGAGTCAGTGACAGAAGAAGAATTTAACAGATTCTTGTCGGAAACATGGAT 270
Query 294 ACGAGTGAAGCAAGGAACCGTAAAGTTGTTGCAGTTGAACAA-TTCGATCTCGAAGTCCC 352
||||||||||| ||||||||||||||||||| ||| ||| || |||||||||||||||||
Sbjct 271 ACGAGTGAAGCTAGGAACCGTAAAGTTGTTGAAGTGGAA-AAGTTCGATCTCGAAGTCCC 329
Query 353 TGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCTTTTGTTCTAACGAC 412
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 330 TGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCATTTGTTCTAACAAC 389
Query 413 CGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATGGTTCCTTTGGGTTG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATGGTTCCTTTGGGTTG 449
Query 473 GATTGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCAATCTCTCTTTACGCAAACACTCT 532
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 450 GATAGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCGATCTCCCTTTACGCAAACACTCT 509
Query 533 TATCGCCAAACTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTTGCAGG 592
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 510 TATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTGGCAGG 569
Query 593 CTTCATCTATGGTAAAAAGATGTATCGTGTTACATGGGGATTGCAATATGTCAATCTTTT 652
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 570 CTTCATCTATGGTAAAAAGATGTATCGTGTTACATGGGGATTACAATATGTCAATCTTTT 629
Query 653 CATGATTAATTGTGGCTTCATCATACTTGCTGGTTCAGCCTTAAAGGCTGTTTATGTACT 712
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 630 CATGATTAATTGTGGCTTCATCATACTTGCTGGTTCCGCCTTAAAGGCTGTTTATGTTCT 689
Query 713 TTTTAGAGATGATAGTCTCATGAAACTGCCTCACTTCATCGCCATCGCGGGTGTTGTATG 772
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 690 TTTTAGAGATGACAGTCTCATGAAACTGCCTCACTTTATCGCCATCGCGGGTGTTGTATG 749
Query 773 CGCGATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGGAATCTGGCTAGGAGTTTC 832
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TGCAATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGGAATCTGGCTAGGAGTTTC 809
Query 833 AACAATCCTCAGCATAATCTACATTATTGTTGCAATAGTTCTATCAGCTAAAGATGGAGT 892
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 810 AACAATCCTCAGCATAATCTACATTGTTGTTGCAATAGTTCTATCAGCTAAAGATGGAGT 869
Query 893 AAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTTACCAT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTTACCAT 929
Query 953 AACAGGAGCAGCTGCAAATCTAGTTTTCGCATTCAACACGGGAATGCTCCCGGAAATACA 1012
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 930 AACAGGAGCAGCTGCAAATCTGGTTTTCGCATTCAACACGGGAATGCTCCCGGAAATACA 989
Query 1013 GGCCACGGTGAAGCAACCGGTCGTTAAAAACATGATGAAGGCTCTGTATTTTCAATTCAC 1072
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 990 GGCAACAGTGAAGCAACCGGTGGTTAAAAACATGATGAAGGCTCTGTATTTTCAATTCAC 1049
Query 1073 TGTTGGTGTTTTACCTATGTACGCGGTTACATTCATCGGATATTGGGCTTACGGGTCCTC 1132
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1050 TGTTGGTGTTTTACCGATGTACGCGGTTACATTCATCGGTTATTGGGCTTACGGGTCCTC 1109
Query 1133 GACATCGACTTATCTCTTAAACAGCGTCAGTGGACCTGTTTGGGTCAAAGCACTCGCTAA 1192
||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 1110 GACATCGACTTATCTGTTAAACAGCGTCAGTGGACCTCTCTGGGTCAAAGCCCTCGCTAA 1169
Query 1193 CATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATATTTTTGCAAGTCCGACTTATGA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 CATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATATTTTTGCAAGTCCGACTTATGA 1229
Query 1253 GTATATGGACACAAAGTATGGAGTCAAAGGAAGTCCATTGGCAATGAAGAATCTGTTGTT 1312
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1230 GTATATGGACACAAAGTATGGAGTCAAAGGAAGTCCATTAGCATTGAAGAATCTGTTGTT 1289
Query 1313 TAGAACAGTAGCAAGAGGAAGCTACATTGCGGTGAGCACTCTTCTCTCTGCGCTTTTACC 1372
||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 1290 TAGAACAGTAGCACGAGGAAGCTACATCGCGGTAAGCACACTTCTCTCTGCGCTTTTGCC 1349
Query 1373 GTTTCTCGGAGATTTCATGAGCCTTACCGGAGCGATAAGCACGTTCCCTCTCACATTCAT 1432
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1350 GTTTCTCGGAGATTTCATGAGCCTCACCGGAGCTATAAGCACGTTCCCTCTCACATTCAT 1409
Query 1433 ATTAGCGAATCACATGTATCTTGTTGCTATGAATGATGAGCTTAGTCTTGTGCAAAAGCT 1492
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1410 ATTAGCGAATCACATGTATCTTGTTGCTATGAACGATAAGCTTAGTCTTGTGCAAAAGCT 1469
Query 1493 ATGGCATTGGCTCAATGTTTGCTTCTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGC 1552
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1470 ATGGCATTGGCTTAATGTTTGCGTCTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGC 1529
Query 1553 TGTTAGACTCATCTCTGTTGACTCCAAGAACTTCCATGTTTTTGCTGATGTTTGATT-AA 1611
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1530 TGTTAGACTCATCTCTGTTGATTCCAAGAACTTCCATGTTTTTGCTGATGTTTGATTTAA 1589
Query 1612 AATGTCTTCGACATTTTTAACGATGTAATCTTT 1644
|| || ||||||||| |||||| ||||||||||
Sbjct 1590 AACGTATTCGACATTGTTAACGTTGTAATCTTT 1622
> Ahg483024 jgi|Araly1|483024|fgenesh2_kg.4__2084__AT2G39890.2
Length=1737
Score = 1153 bits (624), Expect = 0.0
Identities = 1065/1278 (83%), Gaps = 30/1278 (2%)
Strand=Plus/Plus
Query 339 GATCTCGAAGTCCCTGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCT 398
||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 342 GATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCG 401
Query 399 TTTGTTCTAACGACCGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATG 458
|||||| | || |||||||||||||| || ||||||||||||||||| || ||| | |||
Sbjct 402 TTTGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATG 461
Query 459 GTTCCTTTGGGTTGGATTGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCAATCTCTCTT 518
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 462 GTTCCTTTAGGTTGGATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCTCTT 521
Query 519 TACGCAAACACTCTTATCGCCAAACTTCATGAGTTTGGTGGCAAAAGACACATTCGTTAT 578
|| ||||||||||| || || || ||||||||||||||||||| |||||||||||| |||
Sbjct 522 TATGCAAACACTCTCATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTAT 581
Query 579 AGAGATCTTGCAGGCTTCATCTATGGTA-AAAAGATGTATCGTGTTACATGGGGATTGCA 637
||||| ||||| || ||||| || |||| ||| | | |||| | ||||||||||||||||
Sbjct 582 AGAGACCTTGCTGGATTCATTTACGGTAGAAAGGCT-TATCATCTTACATGGGGATTGCA 640
Query 638 ATATGTCAATCTTTTCATGATTAATTGTGGCTTCATCATACTTGCTGGTTCAGCCTTAAA 697
|||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 641 ATATGTCAATCTTTTCATGATTAATTGTGGATTCATCATCCTAGCTGGTTCCGCCTTGAA 700
Query 698 GGCTGTTTATGTACTTTTTAGAGATGAT-AGT-CTCATGAAACTGCCTCACTTCATCGCC 755
|||||||||||| ||||| || |||||| | | | ||||||||| ||||| || || |||
Sbjct 701 GGCTGTTTATGTGCTTTTCAGGGATGATCA-TAC-CATGAAACTACCTCATTTTATAGCC 758
Query 756 ATCGCGGGTGTTG-TATGCGCGATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGG 814
|| || ||| || | || ||||||||||| || || |||||||||||||| ||||||||
Sbjct 759 ATTGCTGGT-TTAATTTGTGCGATTTTCGCGATTGGGATTCCTCATTTATCGGCTCTTGG 817
Query 815 AATCTGGCTAGGAGTTTCAACAATCCTCAG-CATAATCTACATTATTGTTGCAATAGTTC 873
||||||| | |||||| || ||||||| | | ||||| || |||| ||||| || |
Sbjct 818 GGTCTGGCTTGCAGTTTCGACCTTCCTCAGTC-TCATCTATATCGTTGTGGCAATTGTGC 876
Query 874 TATCAGCTAAAGATGGAGTAAACA-AGCCTGAAAGAGATTACAACATACAAGGATCATCA 932
|||| | || |||||||||||| | | ||| |||||||||| | |||||||||||||||
Sbjct 877 TATCTGTTAGAGATGGAGTAAAAACA-CCTTCAAGAGATTACGAGATACAAGGATCATCA 935
Query 933 ATAAACAAACTCTTTACCATAACAGGAGCAGCTGCAAATCTAGTTTTCGCATTCAACAC- 991
||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 936 TTAAGCAAACTTTTTACCATCACAGGAGCAGCCGCAAATCTGGTTTTCGCATTCAACACC 995
Query 992 GGGAATGCTCCCGGAAATACAGGCCACGGTGAAGCAACCGGTCGTTAAAAACATGATGAA 1051
|||| |||| || ||||| ||||| || |||| |||||| || |||||||||||||||||
Sbjct 996 GGGA-TGCTTCCAGAAATTCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAA 1054
Query 1052 GGCTCTGTATTTTCAATTCACTGTTGGTGTTTTACCTATGTACGCGGTTACATTCATCGG 1111
|||||| || ||||||||||| | |||||| |||| ||||| || ||||||||||||||
Sbjct 1055 GGCTCTATACTTTCAATTCACAGCGGGTGTTCTACCGATGTATGCAGTTACATTCATCGG 1114
Query 1112 ATATTGGGCTTACGGGTCCTCGACATCGACTTATCT-CTTAAACAGCGTCAGTGGACCTG 1170
||||||||||||||| ||||| || ||||| ||||| || ||||||||||| ||| ||
Sbjct 1115 ATATTGGGCTTACGGATCCTCAACCTCGACCTATCTACT-AAACAGCGTCAATGGCCCAC 1173
Query 1171 TTTGGGTCAAAGCACTCGCTAACATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATA 1230
| ||||||||||| || || ||||| || ||| | || |||||||||||||||||||| |
Sbjct 1174 TCTGGGTCAAAGCCCTTGCAAACATCTCCGCTATCCTTCAATCTGTTATCTCTTTACACA 1233
Query 1231 TTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGG-AGTCAAAGGAAGTCCA 1289
| ||||| ||||| || |||||||| ||||||||||||| ||| | ||||||||| |||
Sbjct 1234 TATTTGCGAGTCCAACATATGAGTACATGGACACAAAGTTTGGGA-TCAAAGGAAACCCA 1292
Query 1290 TTGGCAATGAAGAATCT-GTTGTTTAGAA-CAGTAGCAAGAGGAAGCTACATTGCGGTGA 1347
|| || || ||||| || ||||||||| | || | || |||||| | ||||| ||||| |
Sbjct 1293 TTTGCGATAAAGAA-CTTGTTGTTTAGGATCA-TGGCGAGAGGAGGGTACATAGCGGTTA 1350
Query 1348 GCACTCTTCTCTCTGCGCTTTTACCGTTTCTCGGAGATTTCATGAGCCTTACCGGAGC-G 1406
|||| ||| | || ||||| || ||||| || || || ||||||||||| || || || |
Sbjct 1351 GCACGCTTATTTCAGCGCTCTTGCCGTTCCTTGGTGACTTCATGAGCCTAACTGGTGCAG 1410
Query 1407 ATAAGCACGTTCCCTCTCACATTCATATTAGCGAATCACATGTATCT-TGTTGCTATGAA 1465
| ||||| ||||||||||||||||| ||||| || |||||||| || | || | |||
Sbjct 1411 -TGAGCACATTCCCTCTCACATTCATTTTAGCCAACCACATGTA-CTATAAGGCAAAGAA 1468
Query 1466 TGATGAGCTTAGT-CTTGTGCAAAAGCTATGGCATTGGCTCAATGTT-TGCTTCTTTGGA 1523
|| |||| | | || |||||||||||||||||||||| || || | |||||| |
Sbjct 1469 CAATAAGCTCAATGCTA-TGCAAAAGCTATGGCATTGGCTTAACGTGGT-CTTCTTCAGT 1526
Query 1524 TTAATGTCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGACTCCAAGAAC 1583
|| |||||| ||||||| || ||||| ||||| ||||||||| | ||||| || || |||
Sbjct 1527 TTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCGTTGATTCGAAAAAC 1586
Query 1584 TTCCATGTTTTTGCTGAT 1601
|||||||||||||| |||
Sbjct 1587 TTCCATGTTTTTGCAGAT 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64334423805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5