BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G55740.1 Length=1715 Score E Sequences producing significant alignments: (Bits) Value Ahg486008 jgi|Araly1|486008|fgenesh2_kg.5__2000__AT3G55740.1 2490 0.0 Ahg483024 jgi|Araly1|483024|fgenesh2_kg.4__2084__AT2G39890.2 1153 0.0 > Ahg486008 jgi|Araly1|486008|fgenesh2_kg.5__2000__AT3G55740.1 Length=1622 Score = 2490 bits (1348), Expect = 0.0 Identities = 1558/1653 (94%), Gaps = 40/1653 (2%) Strand=Plus/Plus Query 1 TGCAAATAATTCAT----ACATAC--AGACGTATCGATCTTGCTGACCCATCAATTAAAT 54 |||||||||||||| ||| || ||||||||| ||||| ||||||||||||||||| Sbjct 1 TGCAAATAATTCATACACACACACAGAGACGTATCCATCTTTCTGACCCATCAATTAAA- 59 Query 55 TTTGACCCAAAAGGTCAAATTCACTATAAGAAAAACAGAATTCA-TTTCATCAAAATTCC 113 |||||||||||| | | | | |||||||||||| ||||||| |||||| Sbjct 60 TTTGACCCAAAA-G----A-T--C--------AAACAGAATTCATTTTCATC--AATTCC 101 Query 114 ATTTCACACTTTTTCTGTCTGTTACGATTCTTGCTTGATTTCTTTCTAAACAAAGCAAAA 173 ||||||||||||| ||||||||||||| || ||||| |||||||| |||||||||||| Sbjct 102 ATTTCACACTTTTCCTGTCTGTTACGA---TT-CTTGA-TTCTTTCT-AACAAAGCAAAA 155 Query 174 GTTGTCTTTTTGGAGTTGTGAGCAACTAATTCTCTGAAATTGAGGAAGAGAAAGCGAGAA 233 |||||||||||| || |||||||||||||||||| |||| ||||||||||||| | | || Sbjct 156 GTTGTCTTTTTGAAG-TGTGAGCAACTAATTCTC-GAAACTGAGGAAGAGAAA-CTA-AA 211 Query 234 GGtttttttGGAGTCAGAGACAGAAGAAGAATTTAACAGATTCTTGTCGGAAACATGGAT 293 || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 212 GG-GTTTTTGGAGTCAGTGACAGAAGAAGAATTTAACAGATTCTTGTCGGAAACATGGAT 270 Query 294 ACGAGTGAAGCAAGGAACCGTAAAGTTGTTGCAGTTGAACAA-TTCGATCTCGAAGTCCC 352 ||||||||||| ||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct 271 ACGAGTGAAGCTAGGAACCGTAAAGTTGTTGAAGTGGAA-AAGTTCGATCTCGAAGTCCC 329 Query 353 TGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCTTTTGTTCTAACGAC 412 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 330 TGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCATTTGTTCTAACAAC 389 Query 413 CGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATGGTTCCTTTGGGTTG 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 CGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATGGTTCCTTTGGGTTG 449 Query 473 GATTGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCAATCTCTCTTTACGCAAACACTCT 532 ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 450 GATAGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCGATCTCCCTTTACGCAAACACTCT 509 Query 533 TATCGCCAAACTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTTGCAGG 592 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 510 TATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTGGCAGG 569 Query 593 CTTCATCTATGGTAAAAAGATGTATCGTGTTACATGGGGATTGCAATATGTCAATCTTTT 652 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 570 CTTCATCTATGGTAAAAAGATGTATCGTGTTACATGGGGATTACAATATGTCAATCTTTT 629 Query 653 CATGATTAATTGTGGCTTCATCATACTTGCTGGTTCAGCCTTAAAGGCTGTTTATGTACT 712 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 630 CATGATTAATTGTGGCTTCATCATACTTGCTGGTTCCGCCTTAAAGGCTGTTTATGTTCT 689 Query 713 TTTTAGAGATGATAGTCTCATGAAACTGCCTCACTTCATCGCCATCGCGGGTGTTGTATG 772 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 690 TTTTAGAGATGACAGTCTCATGAAACTGCCTCACTTTATCGCCATCGCGGGTGTTGTATG 749 Query 773 CGCGATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGGAATCTGGCTAGGAGTTTC 832 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 750 TGCAATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGGAATCTGGCTAGGAGTTTC 809 Query 833 AACAATCCTCAGCATAATCTACATTATTGTTGCAATAGTTCTATCAGCTAAAGATGGAGT 892 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 810 AACAATCCTCAGCATAATCTACATTGTTGTTGCAATAGTTCTATCAGCTAAAGATGGAGT 869 Query 893 AAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTTACCAT 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 870 AAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTTACCAT 929 Query 953 AACAGGAGCAGCTGCAAATCTAGTTTTCGCATTCAACACGGGAATGCTCCCGGAAATACA 1012 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 930 AACAGGAGCAGCTGCAAATCTGGTTTTCGCATTCAACACGGGAATGCTCCCGGAAATACA 989 Query 1013 GGCCACGGTGAAGCAACCGGTCGTTAAAAACATGATGAAGGCTCTGTATTTTCAATTCAC 1072 ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 990 GGCAACAGTGAAGCAACCGGTGGTTAAAAACATGATGAAGGCTCTGTATTTTCAATTCAC 1049 Query 1073 TGTTGGTGTTTTACCTATGTACGCGGTTACATTCATCGGATATTGGGCTTACGGGTCCTC 1132 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1050 TGTTGGTGTTTTACCGATGTACGCGGTTACATTCATCGGTTATTGGGCTTACGGGTCCTC 1109 Query 1133 GACATCGACTTATCTCTTAAACAGCGTCAGTGGACCTGTTTGGGTCAAAGCACTCGCTAA 1192 ||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||| Sbjct 1110 GACATCGACTTATCTGTTAAACAGCGTCAGTGGACCTCTCTGGGTCAAAGCCCTCGCTAA 1169 Query 1193 CATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATATTTTTGCAAGTCCGACTTATGA 1252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1170 CATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATATTTTTGCAAGTCCGACTTATGA 1229 Query 1253 GTATATGGACACAAAGTATGGAGTCAAAGGAAGTCCATTGGCAATGAAGAATCTGTTGTT 1312 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 1230 GTATATGGACACAAAGTATGGAGTCAAAGGAAGTCCATTAGCATTGAAGAATCTGTTGTT 1289 Query 1313 TAGAACAGTAGCAAGAGGAAGCTACATTGCGGTGAGCACTCTTCTCTCTGCGCTTTTACC 1372 ||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||| || Sbjct 1290 TAGAACAGTAGCACGAGGAAGCTACATCGCGGTAAGCACACTTCTCTCTGCGCTTTTGCC 1349 Query 1373 GTTTCTCGGAGATTTCATGAGCCTTACCGGAGCGATAAGCACGTTCCCTCTCACATTCAT 1432 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1350 GTTTCTCGGAGATTTCATGAGCCTCACCGGAGCTATAAGCACGTTCCCTCTCACATTCAT 1409 Query 1433 ATTAGCGAATCACATGTATCTTGTTGCTATGAATGATGAGCTTAGTCTTGTGCAAAAGCT 1492 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1410 ATTAGCGAATCACATGTATCTTGTTGCTATGAACGATAAGCTTAGTCTTGTGCAAAAGCT 1469 Query 1493 ATGGCATTGGCTCAATGTTTGCTTCTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGC 1552 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1470 ATGGCATTGGCTTAATGTTTGCGTCTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGC 1529 Query 1553 TGTTAGACTCATCTCTGTTGACTCCAAGAACTTCCATGTTTTTGCTGATGTTTGATT-AA 1611 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1530 TGTTAGACTCATCTCTGTTGATTCCAAGAACTTCCATGTTTTTGCTGATGTTTGATTTAA 1589 Query 1612 AATGTCTTCGACATTTTTAACGATGTAATCTTT 1644 || || ||||||||| |||||| |||||||||| Sbjct 1590 AACGTATTCGACATTGTTAACGTTGTAATCTTT 1622 > Ahg483024 jgi|Araly1|483024|fgenesh2_kg.4__2084__AT2G39890.2 Length=1737 Score = 1153 bits (624), Expect = 0.0 Identities = 1065/1278 (83%), Gaps = 30/1278 (2%) Strand=Plus/Plus Query 339 GATCTCGAAGTCCCTGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCT 398 ||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct 342 GATATCGAAATCCCTGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCG 401 Query 399 TTTGTTCTAACGACCGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATG 458 |||||| | || |||||||||||||| || ||||||||||||||||| || ||| | ||| Sbjct 402 TTTGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATG 461 Query 459 GTTCCTTTGGGTTGGATTGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCAATCTCTCTT 518 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 462 GTTCCTTTAGGTTGGATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCTCTT 521 Query 519 TACGCAAACACTCTTATCGCCAAACTTCATGAGTTTGGTGGCAAAAGACACATTCGTTAT 578 || ||||||||||| || || || ||||||||||||||||||| |||||||||||| ||| Sbjct 522 TATGCAAACACTCTCATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTAT 581 Query 579 AGAGATCTTGCAGGCTTCATCTATGGTA-AAAAGATGTATCGTGTTACATGGGGATTGCA 637 ||||| ||||| || ||||| || |||| ||| | | |||| | |||||||||||||||| Sbjct 582 AGAGACCTTGCTGGATTCATTTACGGTAGAAAGGCT-TATCATCTTACATGGGGATTGCA 640 Query 638 ATATGTCAATCTTTTCATGATTAATTGTGGCTTCATCATACTTGCTGGTTCAGCCTTAAA 697 |||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| || Sbjct 641 ATATGTCAATCTTTTCATGATTAATTGTGGATTCATCATCCTAGCTGGTTCCGCCTTGAA 700 Query 698 GGCTGTTTATGTACTTTTTAGAGATGAT-AGT-CTCATGAAACTGCCTCACTTCATCGCC 755 |||||||||||| ||||| || |||||| | | | ||||||||| ||||| || || ||| Sbjct 701 GGCTGTTTATGTGCTTTTCAGGGATGATCA-TAC-CATGAAACTACCTCATTTTATAGCC 758 Query 756 ATCGCGGGTGTTG-TATGCGCGATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGG 814 || || ||| || | || ||||||||||| || || |||||||||||||| |||||||| Sbjct 759 ATTGCTGGT-TTAATTTGTGCGATTTTCGCGATTGGGATTCCTCATTTATCGGCTCTTGG 817 Query 815 AATCTGGCTAGGAGTTTCAACAATCCTCAG-CATAATCTACATTATTGTTGCAATAGTTC 873 ||||||| | |||||| || ||||||| | | ||||| || |||| ||||| || | Sbjct 818 GGTCTGGCTTGCAGTTTCGACCTTCCTCAGTC-TCATCTATATCGTTGTGGCAATTGTGC 876 Query 874 TATCAGCTAAAGATGGAGTAAACA-AGCCTGAAAGAGATTACAACATACAAGGATCATCA 932 |||| | || |||||||||||| | | ||| |||||||||| | ||||||||||||||| Sbjct 877 TATCTGTTAGAGATGGAGTAAAAACA-CCTTCAAGAGATTACGAGATACAAGGATCATCA 935 Query 933 ATAAACAAACTCTTTACCATAACAGGAGCAGCTGCAAATCTAGTTTTCGCATTCAACAC- 991 ||| |||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct 936 TTAAGCAAACTTTTTACCATCACAGGAGCAGCCGCAAATCTGGTTTTCGCATTCAACACC 995 Query 992 GGGAATGCTCCCGGAAATACAGGCCACGGTGAAGCAACCGGTCGTTAAAAACATGATGAA 1051 |||| |||| || ||||| ||||| || |||| |||||| || ||||||||||||||||| Sbjct 996 GGGA-TGCTTCCAGAAATTCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAA 1054 Query 1052 GGCTCTGTATTTTCAATTCACTGTTGGTGTTTTACCTATGTACGCGGTTACATTCATCGG 1111 |||||| || ||||||||||| | |||||| |||| ||||| || |||||||||||||| Sbjct 1055 GGCTCTATACTTTCAATTCACAGCGGGTGTTCTACCGATGTATGCAGTTACATTCATCGG 1114 Query 1112 ATATTGGGCTTACGGGTCCTCGACATCGACTTATCT-CTTAAACAGCGTCAGTGGACCTG 1170 ||||||||||||||| ||||| || ||||| ||||| || ||||||||||| ||| || Sbjct 1115 ATATTGGGCTTACGGATCCTCAACCTCGACCTATCTACT-AAACAGCGTCAATGGCCCAC 1173 Query 1171 TTTGGGTCAAAGCACTCGCTAACATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATA 1230 | ||||||||||| || || ||||| || ||| | || |||||||||||||||||||| | Sbjct 1174 TCTGGGTCAAAGCCCTTGCAAACATCTCCGCTATCCTTCAATCTGTTATCTCTTTACACA 1233 Query 1231 TTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGG-AGTCAAAGGAAGTCCA 1289 | ||||| ||||| || |||||||| ||||||||||||| ||| | ||||||||| ||| Sbjct 1234 TATTTGCGAGTCCAACATATGAGTACATGGACACAAAGTTTGGGA-TCAAAGGAAACCCA 1292 Query 1290 TTGGCAATGAAGAATCT-GTTGTTTAGAA-CAGTAGCAAGAGGAAGCTACATTGCGGTGA 1347 || || || ||||| || ||||||||| | || | || |||||| | ||||| ||||| | Sbjct 1293 TTTGCGATAAAGAA-CTTGTTGTTTAGGATCA-TGGCGAGAGGAGGGTACATAGCGGTTA 1350 Query 1348 GCACTCTTCTCTCTGCGCTTTTACCGTTTCTCGGAGATTTCATGAGCCTTACCGGAGC-G 1406 |||| ||| | || ||||| || ||||| || || || ||||||||||| || || || | Sbjct 1351 GCACGCTTATTTCAGCGCTCTTGCCGTTCCTTGGTGACTTCATGAGCCTAACTGGTGCAG 1410 Query 1407 ATAAGCACGTTCCCTCTCACATTCATATTAGCGAATCACATGTATCT-TGTTGCTATGAA 1465 | ||||| ||||||||||||||||| ||||| || |||||||| || | || | ||| Sbjct 1411 -TGAGCACATTCCCTCTCACATTCATTTTAGCCAACCACATGTA-CTATAAGGCAAAGAA 1468 Query 1466 TGATGAGCTTAGT-CTTGTGCAAAAGCTATGGCATTGGCTCAATGTT-TGCTTCTTTGGA 1523 || |||| | | || |||||||||||||||||||||| || || | |||||| | Sbjct 1469 CAATAAGCTCAATGCTA-TGCAAAAGCTATGGCATTGGCTTAACGTGGT-CTTCTTCAGT 1526 Query 1524 TTAATGTCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGACTCCAAGAAC 1583 || |||||| ||||||| || ||||| ||||| ||||||||| | ||||| || || ||| Sbjct 1527 TTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCGTTGATTCGAAAAAC 1586 Query 1584 TTCCATGTTTTTGCTGAT 1601 |||||||||||||| ||| Sbjct 1587 TTCCATGTTTTTGCAGAT 1604 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64334423805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5