BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55760.1
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486012 jgi|Araly1|486012|fgenesh2_kg.5__2004__AT3G55760.2 2946 0.0
> Ahg486012 jgi|Araly1|486012|fgenesh2_kg.5__2004__AT3G55760.2
Length=2030
Score = 2946 bits (1595), Expect = 0.0
Identities = 1828/1937 (94%), Gaps = 29/1937 (1%)
Strand=Plus/Plus
Query 84 GAAGAAGAAGAAACAAATGGCTTTGCGTTTAGGTGTTTCTATAGGGGCAGCTTTGGGTTC 143
||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||||
Sbjct 109 GAAGAAGAAGAAACAAATGGCTTCGCGTTTAGGTGTTTCTATAGGCGCCGCTTTAGGTTC 168
Query 144 CTCTCATTGGGACGACGGACAACGAGTACGACAACGTGACTTCTCCGCTTCTGTGAATTT 203
|||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct 169 CTCTCATTGGGACGACGGACGACGAGTACGACGACGTGACTTCTCCACTTCTGTGAATTT 228
Query 204 CACCGCACCGGTTACGAGCCGG-AGGAGCTTAAGGGGTAGTAGAACCGGTGTGAGGATTC 262
||| ||||||| ||| ||| || | | || |||||||||| ||||||||| ||||
Sbjct 229 CACGGCACCGG---CGA-ACGGAAGAAACCGGAGAGGTAGTAGAAGCGGTGTGAGAATTC 284
Query 263 TTAGGGTTTCAAATGAAGGACGCGAATCGTACCTCGATATGTGGAAGAACGCTGTTGATC 322
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 285 TTAGGGTTTCAAATGAAGGACGCGAATCGTACCTCGATATGTGGAAAAACGCTGTTGATC 344
Query 323 GCGAGAAGAAAGAGAAGGCCTTTGAAAAAATTGCAGAGAATGTTGTAGCTGTTGATGGTG 382
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 345 GCGAGAAGAAAGAGAAGGCCTTTGAGAAAATTGCAGAGAATGTTGTAGCTGTTGATGGTG 404
Query 383 AGAAGGAGAAAGGAGGAGACT-TGGAGAAGAAGAGCGATGAGTTTCAGAAGATCCTCGAG 441
||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||
Sbjct 405 AGAAGGAGAAAGGAGGAGA-TATGGAGAAGAAGAGCGATGAGTTTCAAAAGATCCTTGAG 463
Query 442 GTTTCCGTTGAGGAAAGAGATCGGATTCAGCGAATGCAGGTCGTTGATCGTGCCGCTGCC 501
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 464 GTTTCGGTTGAGGAAAGGGATCGGATTCAGCGTATGCAGGTCGTTGATCGTGCCGCTGCT 523
Query 502 GCAATCTCCGCAGCTAGAGCTATTCTCGCCTCTAACAATTCCGGCGACGGCAAAGAAGGA 561
|| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 524 GCTATCTCTGCTGCTAGAGCGATTCTCGCCTCTAACAATTCCGGCGACGGCAAAGAAGGA 583
Query 562 TTCCCAAATGAAGACAACACTGTCACAAGTGAAGTCACAGAGACACCGAAAAATGCTAAA 621
|| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 584 TTTCCAAATGAAGAGAACACTGTCACAAGTGAAGTCACCGAGACACCGAAAAATCCTAAA 643
Query 622 CTTGGAATGTGGAGCAGAACAGTGTATGTGCCACGGTCAGAAACTTCAGGGACTGAGACA 681
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 644 CTTGGAATGTGGAGCAGAACAGTGTATGTGCCACGGTCAGAAACTTCTGGGACTGAGACA 703
Query 682 CCAGGACCAGATTTTTGGTCATGGACACCTCCTCAAGGTAGTG-A--AA-TT--AGT-T- 733
||||||||||||||||||||||||||||||||||||||||||| | || || | | |
Sbjct 704 CCAGGACCAGATTTTTGGTCATGGACACCTCCTCAAGGTAGTGAAGTAACTTCAAATATG 763
Query 734 -CTGTGGACTTGCAGGCTGTGGAAAAGCCTGCTGAGTTTCCAACTTTGCCAAATCCTGTA 792
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 764 AATGTGGACTTACAGGCTGTGGAAAAGCCTGCTGAGTTTCCAACTTTGCCAAATCCGGTA 823
Query 793 TTGGAGAAAGATAAATCAGCGGATTCTCTTTCGATACCATATGAGAGTATGCTTTCTTCT 852
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 824 TTGGAGAAAGACAAATCAGCAGATTCTCTTTCGATACCCTATGAGAGTATGCTTTCTTCT 883
Query 853 GAAAGACATAGCTTTACTATCCCGCCTTTTGAGTCTTTGATTGAGGTTCGAAAAGAGGCT 912
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 884 GAAAGACATAGCTTTACTATCCCGCCTTTCGAGTCTTTGATCGAGGTTCGAAAAGAGGCA 943
Query 913 GAGACGAAGCCTAGCTCCGAGACTTTATCGACAGAACATGACCTTGATCTCATATCTTCA 972
||||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 944 GAGACAAAGCCTAGTTCCGAGACTTCATCGACAGAACATGACCTTGAGCTCATATCTTCA 1003
Query 973 GCAAACGCGGAAGAAGTAGCTCGTGTTCTTGATAGTTTGGATGAATCTTCAACGCATGGA 1032
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1004 GCAAACGCGGAAGAAGCAGCTCGTGTTCTTGATAGTTTGGATGAATCTTCAACCCATGGA 1063
Query 1033 GTTAGCGAAGATGGATTGAAGTGGTGGAAGCAAACGGGTGTGGAGAAAAGACCTGATGGT 1092
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1064 GTTAGTGAAGATGGATTGAAGTGGTGGAAGCAAACGGGTGTAGAGAAAAGACCTGATGGT 1123
Query 1093 GTGGTTTGCAGGTGGACAATGATACGTGGGGTTACTGCTGATGGTGTTGTTGAGTGGCAA 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GTGGTTTGCAGGTGGACAATGATACGTGGGGTTACTGCTGATGGTGTTGTTGAGTGGCAA 1183
Query 1153 GATAAGTATTGGGAGGCTTCTGATGATTTTGGGTTCAAGGAACTTGGTTCTGAGAAATCA 1212
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1184 GATAAGTATTGGGAGGCTTCTGATGATTTTGGGTTCAAGGAACTTGGTTCCGAGAAATCA 1243
Query 1213 GGACGTGATGCCACTGGAAACGTGTGGCGTGAGTTCTGGAGAGAGTCAATGAGCCAGGAG 1272
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1244 GGACGTGATGCGACTGGAAACGTGTGGCGTGAGTTCTGGAGAGAGTCGATGAGCCAGGAG 1303
Query 1273 AATGGTGTTGTGCATATGGAGAAAACTGCAGACAAATGGGGAAAGAGTGGACAAGGTGAT 1332
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1304 AATGGTGTTGTGCATATGGAGAAAACTGCAGACAAGTGGGGAAAGAGTGGGCAAGGTGAT 1363
Query 1333 GAATGGCAAGAGAAATGGTGGGAGCATTACGATGCTACCGGAAAATCAGAAAAATGGGCT 1392
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GAATGGCAAGAGAAGTGGTTGGAGCATTACGATGCTACCGGAAAATCAGAAAAATGGGCT 1423
Query 1393 CATAAGTGGTGCAGCATTGACCGCAACACGCCTCTTGACGCTGGCCACGCTCATGTCTGG 1452
|||||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1424 CATAAGTGGTGCAGTATCGACCGCAACACACCCCTTGATGCTGGCCACGCTCATGTCTGG 1483
Query 1453 CACGAGAGGTGGGGAGAGAAGTATGACGGGCAAGGCGGAAGCACAAAGTACACAGACAAG 1512
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1484 CATGAGAGGTGGGGAGAGAAGTATGACGGACAAGGCGGAAGCACAAAGTACACAGACAAG 1543
Query 1513 TGGGCGGAACGGTGGGTAGGTGACGGTTGGGACAAATGGGGAGACAAATGGGACGAGAAC 1572
||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1544 TGGGCCGAACGATGGGTTGGAGACGGTTGGGACAAATGGGGAGACAAATGGGACGAGAAC 1603
Query 1573 TTTAACCCGAGCGCTCAAGGAGTGAAACAAGGTGAGACTTGGTGGGAAGGGAAGCACGGC 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TTTAACCCGAGCGCTCAAGGAGTGAAACAAGGTGAGACTTGGTGGGAAGGGAAGCACGGC 1663
Query 1633 GACAGATGGAACCGAAGCTGGGGAGAAGGTCACAACGGATCAGGATGGGTTCACAAATAC 1692
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1664 GACAGATGGAACCGAAGCTGGGGCGAAGGTCACAACGGATCAGGATGGGTTCACAAATAC 1723
Query 1693 GGAAAAAGCAGCAGCGGTGAACACTGGGACACACATGTACCACAAGAAACTTGGTATGAG 1752
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 GGAAAAAGCAGCAGCGGAGAACACTGGGACACACATGTACCACAAGAAACTTGGTATGAG 1783
Query 1753 AAGTTCCCTCACTTTGGCTTCTTCCACTGTTTTGACAACTCTGTTCAGCTCCGAGCCGTT 1812
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 AGGTTCCCTCACTTTGGCTTCTTCCACTGTTTTGACAACTCTGTTCAGCTCCGAGCCGTT 1843
Query 1813 AAGAAGCCTTCTGATATGTCCTAGATATATCAAATACTAAGC-ATAAAATATA-TAAATA 1870
||||||||||||||||||||||||||| |||||| ||||||| ||||| || | ||||||
Sbjct 1844 AAGAAGCCTTCTGATATGTCCTAGATAAATCAAAGACTAAGCCATAAA-TA-AGTAAATA 1901
Query 1871 AGCTGGGACAATCAAAGAATTGGCCTACAATATTAGAGTAGTTTGATCAAGTGCAATGTA 1930
|||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1902 AGCTGGGACAAT-AAT-AATTGGCCTACAATTTTAGAGTAGTTTGATCAAGTGCAATGTA 1959
Query 1931 TGTAATATTTATTATGACTTCTAATTTGTT-CTATGCTTTGGTGTTTCTTAATGAGTATG 1989
| || | | ||||| |||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 1960 T-TA-T-T--ATTATCACTTCTAATTTGTTTC-ATGCTTTGGTGTTTGTTAATGAGTATG 2013
Query 1990 GCCAAAGTTTATTTGGT 2006
||| |||||||||||||
Sbjct 2014 GCCTAAGTTTATTTGGT 2030
Score = 99.0 bits (53), Expect = 1e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 19 TTCCGTGTATTTTGGAGTTTCGTTCGAGGACAGATCTTGATTTGACTCAGCTC 71
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCCGTGTATTTTGGAGTTTCGTTCGAGGACAGATCTTGATTTGACTCAGCTC 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75418685100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5