BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55770.7
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938524 jgi|Araly1|938524|scaffold_502715.1 636 0.0
Ahg483027 jgi|Araly1|483027|fgenesh2_kg.4__2087__AT2G39900.1 180 2e-44
> Ahg938524 jgi|Araly1|938524|scaffold_502715.1
Length=641
Score = 636 bits (344), Expect = 0.0
Identities = 368/380 (97%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 270 GTGAAGGCAAGGCTTTGAGGATGTCTTTTACAGGAACTCAACAGAAATGCAAGGCTTGTG 329
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGAAGGTAAGGCTTTGAGGATGTCTTTTACAGGAACTCAACAGAAATGCAAGGCTTGTG 60
Query 330 AGAAGACTGTTTATGCTGTTGAGCTTCTCTCTGCTGATGGAGTTGGATATCACAAGTCTT 389
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 61 AGAAGACTGTTTATGCTGTTGAGCTTCTCTCAGCTGATGGTGTTGGCTATCACAAGTCTT 120
Query 390 GCTTCAAATGCACTCACTGCAAAAGCAGGCTTCAGCTGAGTAGTTACTCATCAATGGAAG 449
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 121 GCTTCAAATGCACTCACTGCAAAAGCAGGCTTCAGCTGAGCAGTTATTCATCAATGGAAG 180
Query 450 GTGTTTTGTACTGTAAGCCTCATTTTGAGCAGCTCTTTAAGGAGAGTGGTAGTTTCAACA 509
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GTGTGTTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAGAGTGGTAGTTTCAACA 240
Query 510 AGAACTTTCAGTCACCTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGACAAGGACGC 569
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAACTTTCAGTCACCTGCAAAACCGGCTGACAAATCAACTCCTGAGCTGACAAGGACGC 300
Query 570 CTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAATGCGCCACTTGTAGTAAAA 629
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 CTAGCCGAGTTGCCGGCAGGTTCTCTGGTACACAAGAGAAATGCGCCACTTGCAGTAAAA 360
Query 630 CTGTGTATCCTATTGAAAAG 649
||||||||||||| ||||||
Sbjct 361 CTGTGTATCCTATCGAAAAG 380
Score = 407 bits (220), Expect = 9e-113
Identities = 249/263 (95%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 752 GTAACAGTCGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGTTGC 811
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 381 GTAACAGTAGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGCTGC 440
Query 812 CCAATTTCACCTTCCAACTACGCAGCTCTTGAAGGAATCCTGTACTGCAAGCACCATTTC 871
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CCGATTTCGCCTTCCAACTACGCAGCTCTTGAAGGAATCCTGTACTGCAAGCACCATTTC 500
Query 872 GCTCAGCTCTTCAAGGAGAAGGGAAGTTACAACCACTTAATCAAATCCGCTTCCATCAAA 931
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 501 GCTCAGCTCTTCAAGGAAAAGGGAAGCTACAACCACTTGATCAAATCCGCTTCCATCAAA 560
Query 932 CGCTCTGCAGCCGCAGCAGTCGCCGCCGGTGTACCAGCAGCCTCCGTTCCTGAATCTTAA 991
|||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 561 CGCTCTGCAGCCGCTGCAGTCGCTGCCGGTGTACCAGCAACCTCGGTTCCTGAATCTTAA 620
Query 992 AATCCAATAATTTCTCCTCTCTA 1014
||| ||||||| ||||||||||
Sbjct 621 AATTCAATAAT--CTCCTCTCTA 641
> Ahg483027 jgi|Araly1|483027|fgenesh2_kg.4__2087__AT2G39900.1
Length=916
Score = 180 bits (97), Expect = 2e-44
Identities = 193/240 (80%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 752 GTAACAGTCGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGTTGC 811
||||| || || |||||| || || || || ||||||||||| || |||||||| ||
Sbjct 558 GTAACTGTGGAAAGCCAGTGTTACCATAAATCTTGCTTCAAGTGTTCTCATGGAGGCTGT 617
Query 812 CCAATTTCACCTTCCAACTACGCAGCTCTTGAAGGAATCCTGTACTGCAAGCACCATTTC 871
|| || || || || ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 618 CCGATATCTCCATCGAACTATGCAGCTCTTGAAGGAATTTTGTACTGCAAGCACCATTTC 677
Query 872 GCTCAGCTCTTCAAGGAGAAGGGAAGTTACAACCA-CTTAATCAAATCCGCTTCCATCAA 930
|||||||| ||||||||||| ||||||||||| || || | ||||||| |||||||||||
Sbjct 678 GCTCAGCTTTTCAAGGAGAAAGGAAGTTACAATCATCTCA-TCAAATCTGCTTCCATCAA 736
Query 931 ACGCTCTGCAGCCGCAGC-AGTCGCCGCCGGTGTACCAGCAGCCTCCGTTCCTGAATCTT 989
|||| || | || || || | ||| || | || | | | ||| ||||||| |||||||
Sbjct 737 ACGCGCTACTGCTGCTGCTAC-CGCAGCTGCTGCAGCTGTAGCAGCCGTTCCCGAATCTT 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5