BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55780.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486019 jgi|Araly1|486019|fgenesh2_kg.5__2011__AT3G55780.1 1857 0.0
Ahg948190 jgi|Araly1|948190|scaffold_800077.1 128 1e-28
> Ahg486019 jgi|Araly1|486019|fgenesh2_kg.5__2011__AT3G55780.1
Length=1224
Score = 1857 bits (1005), Expect = 0.0
Identities = 1095/1140 (96%), Gaps = 0/1140 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAAATGCActctctctcctcttatctcctcctccttatctcGTTAACCGCCATA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAAAATGCACTCTCTCTCCTCTTACCTCCTCCTCCTTATCTCGTTAACCGCCATA 60
Query 61 GCTACACCTACGACAACCTCCGCCACAACGATCGGAGTCACATACTCGACTCCAGCTTCA 120
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 GCTACACCTACGACAACCTCCGCCACGACGATCGGAGTCACCTACTCGACTCCAGCTTCA 120
Query 121 ATCTCCGGCACCGTACAACTCTCACCGGACAGAATCGCCGAAAAAGTCGTTTCAATGAAC 180
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 121 ATATCCGGCACCGTACAACTATCACCGGACAGAATCGCCGAAAAAGTCGTTTCTATGAAG 180
Query 181 ATTCCGGCGGTGAGACTCCTCGATTCAAATCCGGCGATGATTCGTGCCTTCGCTTACACA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCCGGCAGTGAGACTCCTCGATTCAAATCCGGCGATGATTCGTGCCTTCGCTTACACA 240
Query 241 AACGTATCTCTCTTCCTCTCCGTACCAAATCCACTAGTTCCTCTCCTCGCTTCAAATCGT 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AACGTATCTCTCTTCCTCTCCGTACCAAATCCTCTAGTTCCTCTCCTCGCTTCAAATCGT 300
Query 301 TCTCTCGCGATGCGTTGGGTCTATCGCCATGTGCTTCCTTTTTATCCTCGCACCAAGATC 360
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 301 TCGCTCGCGATGCGTTGGGTCTATCGCCATGTGCTTCCGTTCCATCCTCGCACCAAGATC 360
Query 361 TCAATCATCTCCGTCGGTAACGACGTGATTTCGTATTCTCCGGACGTATCTCCGTTTCTC 420
||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||
Sbjct 361 TCAATCATCTCCGTCGGAAACGACGTGATTTCATACTCGCCGGACGTATCTCCGTTTCTC 420
Query 421 CTCCGTGCGATGCAGAATGTTCATCTATCTCTTGTAGATCTGAGAATCTACAAGATCTCT 480
||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 421 CTCCGCGCGATGCAGAATGTTCATTTATCTCTCGTAGATCTGAGAATCTTCAAGATCTCT 480
Query 481 GTATCAACGACGTTCTCTTTCTTCAACATCGTACCCACGGCATTTCCACCTTCGTCGGCG 540
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GTATCGACGACGTTCTCTTTCTTCAACATCGTACCCACGGCGTTTCCACCTTCGTCGGCG 540
Query 541 CAGTTTCAACAACCTAACGGAGAAGTTATCATCAGACCGATTTTGCAATTCCTCGAAAGA 600
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 541 CAGTTTCAACAACCTAACGGAGAAGTGATTATCAGACCGATTTTGCAATTCCTTGAAAGA 600
Query 601 ACGAATTCGTCTTTCTTGATCAATCTCTATCCCTACAATATGTATCGGTCTAGCTTCTCG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGAATTCGTCTTTCTTGATCAATCTCTATCCCTACAATATGTATCGGTCTAGCTTCTCG 660
Query 661 ATTCCGATTGGATTTGCTCTTTTTGAAGAGTTCCCGTTCAATTTCAGAGATGATCTGACC 720
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 661 ATTCCGATTGGATTTGCTCTTTTTGAAGAGTTCCCGTTTAATTTCAGAGACGATCTCACC 720
Query 721 ACCGGAGTAAGATACCGGAATCTTTTTGATATGATGGTTGATGCTGTGATTAGCTCTATG 780
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 ACCGGAGTTAGATACCGTAATCTGTTTGATATGATGGTTGATGCTGTGATTAGCTCTATG 780
Query 781 GCTGTTATGGGTCATGAGAATCTTCCGGTGATTGTGGCGGAGACTGGTTGGCCTAGCTCT 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTGTTATGGGTCACGAGAATCTTCCGGTGATTGTGGCGGAGACTGGTTGGCCTAGCTCT 840
Query 841 GGAATTGATGCTAGTGAAGTAGATGCGACGTTGTTGTATAGTGAGATGTTCTTGAAAGCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAATTGATGCTAGTGAAGTAGATGCGACGTTGTTGTATAGTGAGATGTTCTTGAAAGCT 900
Query 901 TTGTTGACTCATCTGAGAAGTGGATGTGGAACACCGTTGAGGAAAGAAGGTGTTTCAGAG 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTGTTAACTCATCTGAGAAGTGGATGTGGAACACCGTTGAGGAAAGAAGGTGTTTCAGAG 960
Query 961 GTTTATATCTTTGAGCTTGTTGAGAAAGATGCTAAGCAAGGGATTAGGAATTGGGGACTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTTTATATCTTTGAGCTTGTTGAGAAAGATGCTAAGCAAGGGATTAGGAATTGGGGACTT 1020
Query 1021 TTGCATCATAACATGACTAGTAAGTACAGCTTCGACTTCTCGGATGGAGGCAAAGTCAGA 1080
||||||||||||||||||||||||||||||| || ||||| ||||||||||||| | ||
Sbjct 1021 CTGCATCATAACATGACTAGTAAGTACAGCTTTGAGTTCTCAGATGGAGGCAAAGCCGGA 1080
Query 1081 AGATTCAAAGAGATTTTGGTTGGATTCTTTGTGCAAGTGGTTATGATAGGTTACGGCTAT 1140
|||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 AGATACAAAGAGCTTTTAATTGGATTCTTTGTGCAAGTGGTAATGATAGGTTACGGCTAT 1140
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1247 GGAATGGCATTTTGGGTCTCACACATAGAAACTATAGAAGCTGA 1290
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1181 GGAATGTAATTTTGGGTCTCACACATAGAAACTATAGAAGCTGA 1224
> Ahg948190 jgi|Araly1|948190|scaffold_800077.1
Length=478
Score = 128 bits (69), Expect = 1e-28
Identities = 89/99 (90%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 745 TTTGATATGATGGTTGATGCTGTGATTAGCTCTATGGCTGTTATGGGTCATGAGAATCTT 804
||||||||||||||||||| ||||||| |||||||||| || | ||| || |||||||||
Sbjct 339 TTTGATATGATGGTTGATGTTGTGATTGGCTCTATGGCCGTCAGGGGCCACGAGAATCTT 398
Query 805 CCGGTGATTGTGGCGGAGACTGGTTGGCCTAGCTCTGGA 843
||||||||||||||||||||||||| |||||| || |||
Sbjct 399 CCGGTGATTGTGGCGGAGACTGGTTTGCCTAGATCGGGA 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5