BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G55790.1

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486020 jgi|Araly1|486020|fgenesh2_kg.5__2012__AT3G55790.1         108    3e-23


> Ahg486020 jgi|Araly1|486020|fgenesh2_kg.5__2012__AT3G55790.1
Length=297

 Score =  108 bits (58),  Expect = 3e-23
 Identities = 70/76 (92%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  1   ATGGTTATACACAAATCAATTACCCCAATCGCTCTGATGTTACTATTACTACTAGCGATC  60
           ||||||||||||||||||||||  | ||||||||  ||||||||||||||||||||||||
Sbjct  1   ATGGTTATACACAAATCAATTAAACTAATCGCTCAAATGTTACTATTACTACTAGCGATC  60

Query  61  CATGCACATATTCAAG  76
           ||||||||||| ||||
Sbjct  61  CATGCACATATCCAAG  76



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10988809632


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5