BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G55820.1
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938528 jgi|Araly1|938528|scaffold_502719.1 896 0.0
> Ahg938528 jgi|Araly1|938528|scaffold_502719.1
Length=649
Score = 896 bits (485), Expect = 0.0
Identities = 592/643 (92%), Gaps = 10/643 (2%)
Strand=Plus/Plus
Query 324 ACAAAAACGATGAAGAAACCTCATTTCTTGAAGAATCCAGTGTTTTTCCTATTTCTACTC 383
||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 14 ACAAAAA--ATGAAGAAACCTCATTTCTTGAAGAATCCAGTTTTTTTCTTATTTCTTCTC 71
Query 384 ATCACTGTTTCTTCCCTAACTATACTCATCTTCTCCTTTCTCAAATTACCGGAAACACCT 443
||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 72 ATCACTGCTTCTTCCTTAACTATACTCATCTTCTCCTTTCTTAAACTACCGGAAACAACT 131
Query 444 CTCGCCGCCGGTAACCATCTCCGCAAACTCCGTTACGAGCTCA-CCGATGAACTCGGTTT 502
| |||| ||||||||||||| |||||| | | |||| || | |||| |||||||||||
Sbjct 132 CCCGCCACCGGTAACCATCTTCGCAAATTTGGAGACGA-CTTATCCGACGAACTCGGTTT 190
Query 503 ATTCGGGAAGATGATGATCGAAATGCTACCAGAAGATCTGGTTTTCACTGCCTTCGTACC 562
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 191 CTTCGGGAAGATGATGATCGAAATGCTACCTGAAGATCTGGTTTTCACAGCCTTCGTACC 250
Query 563 GTCGGAAAAATCATTCAGCCGAGATCTAGGGCTGAAATTAAACACTAGCCGTCCAATTAA 622
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 251 GTCGGAAAAATCATTCAGCCGAGATCTAGGGCTGAAATCAAACAATAGCCGTCCGATTAA 310
Query 623 ATCCCACGAAGAAGACGACGACGGAGATAACACATACGCCGTCGTATCGAGGATCATGAG 682
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AT-CC-C-AAGAAGACGACGACGGAGATAACACATACGCCGTCGTATCGAGGATCATGAG 367
Query 683 TTTCGCGGTGGTTCCTTACAAAGTAGAAGAAGTAGACATAGGGAACGACGAAACGGCGTC 742
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 368 TTTCGCGGTGGTTCCTTACAAAGTAGAAGAAGTTGACATAGGGAAAGAAGAAACGGCGTC 427
Query 743 GTATGAGTCGTTGAGTGGTTTCACACTTCAGATTTGGAGAAAAAGAAATGGTGGTGGATT 802
|||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 428 GTATGAATCGTTGAGTGGTTTCACACTTAAGATTTGGAGAAAGAGAAATGGTGGTGGATT 487
Query 803 AGTCGTTAATGGCGTTGAGACTGAGAAGATGGGATTAAAGAGAGGTAAAATCATCGTACA 862
||||||||||||||| |||||||||||||||| ||||||||||| |||||||| | ||
Sbjct 488 GGTCGTTAATGGCGTTAAGACTGAGAAGATGGGTTTAAAGAGAGGGAAAATCATTGCCCA 547
Query 863 TATAATGAATGGTGTTGTAATGGATTCTGATTTCGCACAATCTATTGCTTCTTCTACTCC 922
||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 548 TATAATGAACGGTGTTGTAATGGATTCTGATTTTGCACAATCTCTTGCTTCTTCTACTCC 607
Query 923 TAAAGACGAAGATGATGATCCATagagaagaagaagaagaaga 965
| |||||||||||||| ||||||||||||||||||||||||
Sbjct 608 TCAAGACGAAGATGAT---CCATAGAGAAGAAGAAGAAGAAGA 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40867767024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5